Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:58:50 (614572): wrapper (7.7.26015): starting
19:58:50 (614572): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 19:58:50] Arguments: --nthreads 8
[2025-10-12 19:58:50] Threads: 8
[2025-10-12 19:58:50] Checking for CVMFS
[2025-10-12 19:58:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:58:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:58:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:58:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:58:51] 2.13.2.0 8406 37196 106344 151641 0 517 27138037 40960001 28042 16776704 0 233823787 99.853 82198863 48754 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 19:58:51] CVMFS is ok
[2025-10-12 19:58:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:58:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:58:51] Further information can be found at the LHC@home message board.
[2025-10-12 19:58:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:58:51] Checking for apptainer binary...
[2025-10-12 19:58:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:58:51] Running /usr/bin/apptainer --version
[2025-10-12 19:58:51] apptainer version 1.4.3-1.el9
[2025-10-12 19:58:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:58:52] c-208-37.aglt2.org
[2025-10-12 19:58:52] apptainer works
[2025-10-12 19:58:52] Set ATHENA_PROC_NUMBER=8
[2025-10-12 19:58:52] Set ATHENA_CORE_NUMBER=8
[2025-10-12 19:58:52] Starting ATLAS job with PandaID=6840713409
[2025-10-12 19:58:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:27:29]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:27:29] 2025-10-13 01:25:51,621 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:27:29] 2025-10-13 01:25:52,349 | INFO     | time since job start (5201s) is within the limit (172800.0s)
[2025-10-12 21:27:29] 2025-10-13 01:25:54,127 | INFO     | monitor loop #366: job 0:6840713409 is in state 'finished'
[2025-10-12 21:27:29] 2025-10-13 01:25:54,127 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:27:29] 2025-10-13 01:25:54,356 | INFO     | time since job start (5203s) is within the limit (172800.0s)
[2025-10-12 21:27:29] 2025-10-13 01:25:56,363 | INFO     | time since job start (5205s) is within the limit (172800.0s)
[2025-10-12 21:27:29] 2025-10-13 01:25:56,632 | INFO     | monitor loop #367: job 0:6840713409 is in state 'finished'
[2025-10-12 21:27:29] 2025-10-13 01:25:56,632 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:27:29] 2025-10-13 01:25:58,370 | INFO     | time since job start (5207s) is within the limit (172800.0s)
[2025-10-12 21:27:29] 2025-10-13 01:25:59,137 | INFO     | monitor loop #368: job 0:6840713409 is in state 'finished'
[2025-10-12 21:27:29] 2025-10-13 01:25:59,138 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:27:29] 2025-10-13 01:26:00,377 | INFO     | time since job start (5209s) is within the limit (172800.0s)
[2025-10-12 21:27:29] 2025-10-13 01:26:01,644 | INFO     | monitor loop #369: job 0:6840713409 is in state 'finished'
[2025-10-12 21:27:29] 2025-10-13 01:26:01,644 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:27:29] 2025-10-13 01:26:02,384 | INFO     | time since job start (5211s) is within the limit (172800.0s)
[2025-10-12 21:27:29] 2025-10-13 01:26:04,149 | INFO     | monitor loop #370: job 0:6840713409 is in state 'finished'
[2025-10-12 21:27:29] 2025-10-13 01:26:04,150 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:27:29] 2025-10-13 01:26:04,391 | INFO     | time since job start (5213s) is within the limit (172800.0s)
[2025-10-12 21:27:29] 2025-10-13 01:26:06,398 | INFO     | time since job start (5215s) is within the limit (172800.0s)
[2025-10-12 21:27:29] 2025-10-13 01:26:06,657 | INFO     | monitor loop #371: job 0:6840713409 is in state 'finished'
[2025-10-12 21:27:29] 2025-10-13 01:26:06,658 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:27:29] 2025-10-13 01:26:08,405 | INFO     | time since job start (5217s) is within the limit (172800.0s)
[2025-10-12 21:27:29] 2025-10-13 01:26:09,162 | INFO     | monitor loop #372: job 0:6840713409 is in state 'finished'
[2025-10-12 21:27:29] 2025-10-13 01:26:09,162 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:27:29] 2025-10-13 01:26:10,980 | INFO     | PID=618323 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 21:27:29] 2025-10-13 01:26:10,981 | INFO     | .. there are 21 such processes running
[2025-10-12 21:27:29] 2025-10-13 01:26:11,667 | INFO     | monitor loop #373: job 0:6840713409 is in state 'finished'
[2025-10-12 21:27:29] 2025-10-13 01:26:11,667 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:27:29] 2025-10-13 01:26:11,981 | INFO     | time since job start (5220s) is within the limit (172800.0s)
[2025-10-12 21:27:29] 2025-10-13 01:26:13,988 | INFO     | time since job start (5222s) is within the limit (172800.0s)
[2025-10-12 21:27:29] 2025-10-13 01:26:14,172 | INFO     | monitor loop #374: job 0:6840713409 is in state 'finished'
[2025-10-12 21:27:29] 2025-10-13 01:26:14,172 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:27:29] 2025-10-13 01:26:15,995 | INFO     | time since job start (5224s) is within the limit (172800.0s)
[2025-10-12 21:27:29] 2025-10-13 01:26:16,677 | INFO     | monitor loop #375: job 0:6840713409 is in state 'finished'
[2025-10-12 21:27:29] 2025-10-13 01:26:16,677 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:27:29] 2025-10-13 01:26:18,002 | INFO     | time since job start (5227s) is within the limit (172800.0s)
[2025-10-12 21:27:29] 2025-10-13 01:26:18,335 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 21:27:29] 2025-10-13 01:26:18,366 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3653.1675312500006
[2025-10-12 21:27:29] 2025-10-13 01:26:18,412 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6840713409/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:27:29] 2025-10-13 01:26:18,412 | INFO     | extracted standard info from prmon json
[2025-10-12 21:27:29] 2025-10-13 01:26:18,412 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:27:29] 2025-10-13 01:26:18,412 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:27:29] 2025-10-13 01:26:18,423 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:27:29] 2025-10-13 01:26:18,424 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:27:29] 2025-10-13 01:26:18,425 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:27:29] 2025-10-13 01:26:18,425 | INFO     | sum of square deviations: 136093928.98684177
[2025-10-12 21:27:29] 2025-10-13 01:26:18,425 | INFO     | sum of deviations: 6505361573.499992
[2025-10-12 21:27:29] 2025-10-13 01:26:18,425 | INFO     | mean x: 1760316285.5131578
[2025-10-12 21:27:29] 2025-10-13 01:26:18,425 | INFO     | mean y: 2469187.5
[2025-10-12 21:27:29] 2025-10-13 01:26:18,425 | INFO     | -- intersect: -84141577547.2425
[2025-10-12 21:27:29] 2025-10-13 01:26:18,426 | INFO     | intersect: -84141577547.2425
[2025-10-12 21:27:29] 2025-10-13 01:26:18,426 | INFO     | chi2: 0.308408556802593
[2025-10-12 21:27:29] 2025-10-13 01:26:18,426 | INFO     | -- intersect: -84141577547.2425
[2025-10-12 21:27:29] 2025-10-13 01:26:18,426 | INFO     | current memory leak: 47.80 B/s (using 76 data points, chi2=0.31)
[2025-10-12 21:27:29] 2025-10-13 01:26:18,426 | INFO     | could have reported an average CPU frequency of 3645 MHz (6 samples)
[2025-10-12 21:27:29] 2025-10-13 01:26:18,426 | INFO     | ..............................
[2025-10-12 21:27:29] 2025-10-13 01:26:18,426 | INFO     | . Timing measurements:
[2025-10-12 21:27:29] 2025-10-13 01:26:18,426 | INFO     | . get job = 0 s
[2025-10-12 21:27:29] 2025-10-13 01:26:18,426 | INFO     | . initial setup = 2 s
[2025-10-12 21:27:29] 2025-10-13 01:26:18,426 | INFO     | . payload setup = 54 s
[2025-10-12 21:27:29] 2025-10-13 01:26:18,426 | INFO     | . stage-in = 0 s
[2025-10-12 21:27:29] 2025-10-13 01:26:18,426 | INFO     | . payload execution = 5078 s
[2025-10-12 21:27:29] 2025-10-13 01:26:18,426 | INFO     | . stage-out = 2 s
[2025-10-12 21:27:29] 2025-10-13 01:26:18,426 | INFO     | . log creation = 0 s
[2025-10-12 21:27:29] 2025-10-13 01:26:18,426 | INFO     | ..............................
[2025-10-12 21:27:29] 2025-10-13 01:26:18,709 | INFO     | 
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | job summary report
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | --------------------------------------------------
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | PanDA job id: 6840713409
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | task id: 46676269
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | errors: (none)
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | pilot state: finished 
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | transexitcode: 0
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | exeerrorcode: 0
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | exeerrordiag: 
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | exitcode: 0
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | exitmsg: OK
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | cpuconsumptiontime: 24780 s
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | nevents: 400
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | neventsw: 0
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | pid: 628406
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | pgrp: 628406
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | corecount: 8
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | event service: False
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | sizes: {0: 2348851, 11: 2348851, 16: 2349141, 22: 2349169, 5137: 2375704, 5141: 2384886, 5173: 2385024}
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | --------------------------------------------------
[2025-10-12 21:27:29] 2025-10-13 01:26:18,710 | INFO     | 
[2025-10-12 21:27:29] 2025-10-13 01:26:18,711 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-10-12 21:27:29] 2025-10-13 01:26:18,893 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,893 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,893 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,893 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,893 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,893 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,893 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,893 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,893 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,898 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,898 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,898 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,898 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,899 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,899 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,899 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,899 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,899 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:27:29] 2025-10-13 01:26:18,899 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,899 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:27:29] 2025-10-13 01:26:18,899 | INFO     | job 6840713409 has completed (purged errors)
[2025-10-12 21:27:29] 2025-10-13 01:26:18,899 | INFO     | overall cleanup function is called
[2025-10-12 21:27:29] 2025-10-13 01:26:19,919 | INFO     | --- collectZombieJob: --- 10, [628406]
[2025-10-12 21:27:29] 2025-10-13 01:26:19,919 | INFO     | zombie collector waiting for pid 628406
[2025-10-12 21:27:29] 2025-10-13 01:26:19,920 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:27:29] 2025-10-13 01:26:19,920 | INFO     | collected zombie processes
[2025-10-12 21:27:29] 2025-10-13 01:26:19,920 | INFO     | will attempt to kill all subprocesses of pid=628406
[2025-10-12 21:27:29] 2025-10-13 01:26:21,025 | INFO     | process IDs to be killed: [628406] (in reverse order)
[2025-10-12 21:27:29] 2025-10-13 01:26:21,543 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:27:29] 2025-10-13 01:26:21,544 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:27:29] 2025-10-13 01:26:21,565 | INFO     | did not find any defunct processes belonging to 628406
[2025-10-12 21:27:29] 2025-10-13 01:26:21,585 | INFO     | did not find any defunct processes belonging to 628406
[2025-10-12 21:27:29] 2025-10-13 01:26:21,585 | INFO     | ready for new job
[2025-10-12 21:27:29] 2025-10-13 01:26:21,585 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:27:29] 2025-10-13 01:26:21,587 | INFO     | ***************************************
[2025-10-12 21:27:29] 2025-10-13 01:26:21,587 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:27:29] 2025-10-13 01:26:21,587 | INFO     | ***************************************
[2025-10-12 21:27:29] 2025-10-13 01:26:21,587 | INFO     | 
[2025-10-12 21:27:29] 2025-10-13 01:26:21,592 | INFO     | architecture information:
[2025-10-12 21:27:29] 2025-10-13 01:26:21,592 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:27:29] 2025-10-13 01:26:21,671 | INFO     | cat /etc/os-release:
[2025-10-12 21:27:29] NAME="CentOS Linux"
[2025-10-12 21:27:29] VERSION="7 (Core)"
[2025-10-12 21:27:29] ID="centos"
[2025-10-12 21:27:29] ID_LIKE="rhel fedora"
[2025-10-12 21:27:29] VERSION_ID="7"
[2025-10-12 21:27:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:27:29] ANSI_COLOR="0;31"
[2025-10-12 21:27:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:27:29] HOME_URL="https://www.centos.org/"
[2025-10-12 21:27:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:27:29] 
[2025-10-12 21:27:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:27:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:27:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:27:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:27:29] 
[2025-10-12 21:27:29] 2025-10-13 01:26:21,672 | INFO     | ***************************************
[2025-10-12 21:27:29] 2025-10-13 01:26:22,191 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-10-12 21:27:29] 2025-10-13 01:26:22,269 | INFO     | sufficient remaining disk space (170541449216 B)
[2025-10-12 21:27:29] 2025-10-13 01:26:22,269 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:27:29] 2025-10-13 01:26:22,269 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:27:29] 2025-10-13 01:26:22,269 | INFO     | update_server=False
[2025-10-12 21:27:29] 2025-10-13 01:26:22,269 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:27:29] 2025-10-13 01:26:22,492 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:27:29] 2025-10-13 01:26:22,722 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:27:29] 2025-10-13 01:26:22,723 | INFO     | aborting loop
[2025-10-12 21:27:29] 2025-10-13 01:26:23,150 | INFO     | all data control threads have been joined
[2025-10-12 21:27:29] 2025-10-13 01:26:23,277 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:27:29] 2025-10-13 01:26:23,561 | INFO     | all job control threads have been joined
[2025-10-12 21:27:29] 2025-10-13 01:26:23,711 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:27:29] 2025-10-13 01:26:23,728 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:27:29] 2025-10-13 01:26:23,729 | INFO     | all payload control threads have been joined
[2025-10-12 21:27:29] 2025-10-13 01:26:23,842 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:27:29] 2025-10-13 01:26:23,857 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:27:29] 2025-10-13 01:26:23,875 | INFO     | [job] validate thread has finished
[2025-10-12 21:27:29] 2025-10-13 01:26:24,170 | INFO     | [data] control thread has finished
[2025-10-12 21:27:29] 2025-10-13 01:26:24,191 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:27:29] 2025-10-13 01:26:24,225 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:27:29] 2025-10-13 01:26:24,499 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:27:29] 2025-10-13 01:26:24,567 | INFO     | [job] control thread has finished
[2025-10-12 21:27:29] 2025-10-13 01:26:24,662 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:27:29] 2025-10-13 01:26:24,717 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:27:29] 2025-10-13 01:26:24,731 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:27:29] 2025-10-13 01:26:24,735 | INFO     | [payload] control thread has finished
[2025-10-12 21:27:29] 2025-10-13 01:26:24,738 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:27:29] 2025-10-13 01:26:25,029 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:27:29] 2025-10-13 01:26:29,038 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:27:29] 2025-10-13 01:26:52,084 | INFO     | PID=618323 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 21:27:29] 2025-10-13 01:26:52,085 | INFO     | .. there are 21 such processes running
[2025-10-12 21:27:29] 2025-10-13 01:26:52,085 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:27:29] 2025-10-13 01:26:52,085 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:27:29] 2025-10-13 01:26:52,085 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:27:29] 2025-10-13 01:27:20,459 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:27:29] 2025-10-13 01:27:22,267 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139638723213120)>', '<ExcThread(monitor, started 139638110942976)>']
[2025-10-12 21:27:29] 2025-10-13 01:27:22,287 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:27:29] 2025-10-13 01:27:22,287 | INFO     | [monitor] control thread has ended
[2025-10-12 21:27:29] 2025-10-13 01:27:27,293 | INFO     | all workflow threads have been joined
[2025-10-12 21:27:29] 2025-10-13 01:27:27,294 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:27:29] 2025-10-13 01:27:27,294 | INFO     | traces error code: 0
[2025-10-12 21:27:29] 2025-10-13 01:27:27,294 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:27:29] 2025-10-13 01:27:27,677 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:27:29] 2025-10-13 01:27:27,700 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:27:29] 2025-10-13 01:27:27,715 [wrapper] pilotpid: 618323
[2025-10-12 21:27:29] 2025-10-13 01:27:27,758 [wrapper] Pilot exit status: 0
[2025-10-12 21:27:29] 2025-10-13 01:27:28,027 [wrapper] pandaids: 6840713409
[2025-10-12 21:27:29] 2025-10-13 01:27:28,483 [wrapper] cleanup supervisor_pilot  930843 618324
[2025-10-12 21:27:29] 2025-10-13 01:27:28,519 [wrapper] Test setup, not cleaning
[2025-10-12 21:27:29] 2025-10-13 01:27:28,558 [wrapper] apfmon messages muted
[2025-10-12 21:27:29] 2025-10-13 01:27:28,586 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:27:29] 2025-10-13 01:27:28,621 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:27:29]  *** Error codes and diagnostics ***
[2025-10-12 21:27:29]     "exeErrorCode": 0,
[2025-10-12 21:27:29]     "exeErrorDiag": "",
[2025-10-12 21:27:29]     "pilotErrorCode": 0,
[2025-10-12 21:27:29]     "pilotErrorDiag": "",
[2025-10-12 21:27:29]  *** Listing of results directory ***
[2025-10-12 21:27:29] total 415012
[2025-10-12 21:27:29] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 15:28 pilot3.tar.gz
[2025-10-12 21:27:29] -rwx------. 1 boincer umatlas     36292 Oct 12 15:41 runpilot2-wrapper.sh
[2025-10-12 21:27:29] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 15:41 queuedata.json
[2025-10-12 21:27:29] -rw-r--r--. 1 boincer umatlas       100 Oct 12 19:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:27:29] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 19:58 run_atlas
[2025-10-12 21:27:29] -rw-r--r--. 1 boincer umatlas       105 Oct 12 19:58 job.xml
[2025-10-12 21:27:29] -rw-r--r--. 2 boincer umatlas 219988590 Oct 12 19:58 EVNT.46676267._004464.pool.root.1
[2025-10-12 21:27:29] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 19:58 start_atlas.sh
[2025-10-12 21:27:29] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 19:58 shared
[2025-10-12 21:27:29] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 19:58 input.tar.gz
[2025-10-12 21:27:29] -rw-r--r--. 1 boincer umatlas         0 Oct 12 19:58 boinc_lockfile
[2025-10-12 21:27:29] -rw-r--r--. 1 boincer umatlas      2547 Oct 12 19:58 pandaJob.out
[2025-10-12 21:27:29] -rw-------. 1 boincer umatlas    975603 Oct 12 19:59 agis_schedconf.cvmfs.json
[2025-10-12 21:27:29] -rw-------. 1 boincer umatlas   1560580 Oct 12 19:59 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:27:29] drwx------. 5 boincer umatlas      4096 Oct 12 19:59 pilot3
[2025-10-12 21:27:29] -rw-r--r--. 1 boincer umatlas      7174 Oct 12 21:19 init_data.xml
[2025-10-12 21:27:29] -rw-------. 1 boincer umatlas 199004558 Oct 12 21:24 HITS.46676269._087731.pool.root.1
[2025-10-12 21:27:29] -rw-r--r--. 1 boincer umatlas       529 Oct 12 21:24 boinc_task_state.xml
[2025-10-12 21:27:29] -rw-------. 1 boincer umatlas      1051 Oct 12 21:25 memory_monitor_summary.json
[2025-10-12 21:27:29] -rw-------. 1 boincer umatlas    319042 Oct 12 21:25 log.46676269._087731.job.log.tgz.1
[2025-10-12 21:27:29] -rw-------. 1 boincer umatlas      7806 Oct 12 21:26 heartbeat.json
[2025-10-12 21:27:29] -rw-------. 1 boincer umatlas        95 Oct 12 21:26 pilot_heartbeat.json
[2025-10-12 21:27:29] -rw-r--r--. 1 boincer umatlas        27 Oct 12 21:27 wrapper_checkpoint.txt
[2025-10-12 21:27:29] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 21:27 boinc_mmap_file
[2025-10-12 21:27:29] -rw-------. 1 boincer umatlas      4824 Oct 12 21:27 pilotlog.txt
[2025-10-12 21:27:29] -rw-------. 1 boincer umatlas    720064 Oct 12 21:27 log.46676269._087731.job.log.1
[2025-10-12 21:27:29] -rw-------. 1 boincer umatlas       357 Oct 12 21:27 output.list
[2025-10-12 21:27:29] -rw-r--r--. 1 boincer umatlas       620 Oct 12 21:27 runtime_log
[2025-10-12 21:27:29] -rw-------. 1 boincer umatlas   1054720 Oct 12 21:27 result.tar.gz
[2025-10-12 21:27:29] -rw-------. 1 boincer umatlas       657 Oct 12 21:27 XwlLDmE8GS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSJlNDmjy8ZPo.diag
[2025-10-12 21:27:29] -rw-r--r--. 1 boincer umatlas      8703 Oct 12 21:27 runtime_log.err
[2025-10-12 21:27:29] -rw-r--r--. 1 boincer umatlas     22300 Oct 12 21:27 stderr.txt
[2025-10-12 21:27:29] HITS file was successfully produced:
[2025-10-12 21:27:29] -rw-------. 1 boincer umatlas 199004558 Oct 12 21:24 shared/HITS.pool.root.1
[2025-10-12 21:27:29]  *** Contents of shared directory: ***
[2025-10-12 21:27:29] total 410792
[2025-10-12 21:27:29] -rw-r--r--. 2 boincer umatlas 219988590 Oct 12 19:58 ATLAS.root_0
[2025-10-12 21:27:29] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 19:58 start_atlas.sh
[2025-10-12 21:27:29] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 19:58 input.tar.gz
[2025-10-12 21:27:29] -rw-------. 1 boincer umatlas 199004558 Oct 12 21:24 HITS.pool.root.1
[2025-10-12 21:27:29] -rw-------. 1 boincer umatlas   1054720 Oct 12 21:27 result.tar.gz
21:27:31 (614572): run_atlas exited; CPU time 24917.206938
21:27:31 (614572): called boinc_finish(0)

</stderr_txt>
]]>

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