Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:34:16 (4093686): wrapper (7.7.26015): starting
16:34:16 (4093686): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 16:34:16] Arguments: --nthreads 6
[2025-10-13 16:34:16] Threads: 6
[2025-10-13 16:34:16] Checking for CVMFS
[2025-10-13 16:34:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 16:34:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 16:34:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 16:34:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 16:34:17] 2.12.7.0 249871 7017 96472 151653 0 62 14015373 20971521 929 130560 0 11960829 99.996 242046 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 16:34:17] CVMFS is ok
[2025-10-13 16:34:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 16:34:17] Checking for apptainer binary...
[2025-10-13 16:34:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 16:34:17] Running /usr/bin/apptainer --version
[2025-10-13 16:34:17] apptainer version 1.4.0-1.el9
[2025-10-13 16:34:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 16:34:17] testio005
[2025-10-13 16:34:17] apptainer works
[2025-10-13 16:34:17] Set ATHENA_PROC_NUMBER=6
[2025-10-13 16:34:17] Set ATHENA_CORE_NUMBER=6
[2025-10-13 16:34:17] Starting ATLAS job with PandaID=6840536928
[2025-10-13 16:34:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 18:02:57]  *** The last 200 lines of the pilot log: ***
[2025-10-13 18:02:57] 2025-10-13 09:01:30,341 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:02:57] 2025-10-13 09:01:31,736 | INFO     | time since job start (5208s) is within the limit (172800.0s)
[2025-10-13 18:02:57] 2025-10-13 09:01:32,843 | INFO     | monitor loop #404: job 0:6840536928 is in state 'finished'
[2025-10-13 18:02:57] 2025-10-13 09:01:32,844 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:02:57] 2025-10-13 09:01:33,742 | INFO     | time since job start (5210s) is within the limit (172800.0s)
[2025-10-13 18:02:57] 2025-10-13 09:01:35,347 | INFO     | monitor loop #405: job 0:6840536928 is in state 'finished'
[2025-10-13 18:02:57] 2025-10-13 09:01:35,347 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:02:57] 2025-10-13 09:01:35,747 | INFO     | time since job start (5212s) is within the limit (172800.0s)
[2025-10-13 18:02:57] 2025-10-13 09:01:37,753 | INFO     | time since job start (5214s) is within the limit (172800.0s)
[2025-10-13 18:02:57] 2025-10-13 09:01:37,850 | INFO     | monitor loop #406: job 0:6840536928 is in state 'finished'
[2025-10-13 18:02:57] 2025-10-13 09:01:37,850 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:02:57] 2025-10-13 09:01:38,895 | INFO     | PID=4097471 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 18:02:57] 2025-10-13 09:01:38,895 | INFO     | .. there are 2 such processes running
[2025-10-13 18:02:57] 2025-10-13 09:01:39,895 | INFO     | time since job start (5216s) is within the limit (172800.0s)
[2025-10-13 18:02:57] 2025-10-13 09:01:40,353 | INFO     | monitor loop #407: job 0:6840536928 is in state 'finished'
[2025-10-13 18:02:57] 2025-10-13 09:01:40,353 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:02:57] 2025-10-13 09:01:41,901 | INFO     | time since job start (5218s) is within the limit (172800.0s)
[2025-10-13 18:02:57] 2025-10-13 09:01:42,856 | INFO     | monitor loop #408: job 0:6840536928 is in state 'finished'
[2025-10-13 18:02:57] 2025-10-13 09:01:42,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:02:57] 2025-10-13 09:01:43,906 | INFO     | time since job start (5220s) is within the limit (172800.0s)
[2025-10-13 18:02:57] 2025-10-13 09:01:45,359 | INFO     | monitor loop #409: job 0:6840536928 is in state 'finished'
[2025-10-13 18:02:57] 2025-10-13 09:01:45,359 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:02:57] 2025-10-13 09:01:45,911 | INFO     | time since job start (5222s) is within the limit (172800.0s)
[2025-10-13 18:02:57] 2025-10-13 09:01:47,862 | INFO     | monitor loop #410: job 0:6840536928 is in state 'finished'
[2025-10-13 18:02:57] 2025-10-13 09:01:47,862 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:02:57] 2025-10-13 09:01:47,916 | INFO     | time since job start (5224s) is within the limit (172800.0s)
[2025-10-13 18:02:57] 2025-10-13 09:01:49,922 | INFO     | time since job start (5226s) is within the limit (172800.0s)
[2025-10-13 18:02:57] 2025-10-13 09:01:50,365 | INFO     | monitor loop #411: job 0:6840536928 is in state 'finished'
[2025-10-13 18:02:57] 2025-10-13 09:01:50,365 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:02:57] 2025-10-13 09:01:51,927 | INFO     | time since job start (5228s) is within the limit (172800.0s)
[2025-10-13 18:02:57] 2025-10-13 09:01:52,868 | INFO     | monitor loop #412: job 0:6840536928 is in state 'finished'
[2025-10-13 18:02:57] 2025-10-13 09:01:52,869 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:02:57] 2025-10-13 09:01:53,933 | INFO     | time since job start (5230s) is within the limit (172800.0s)
[2025-10-13 18:02:57] 2025-10-13 09:01:55,371 | INFO     | monitor loop #413: job 0:6840536928 is in state 'finished'
[2025-10-13 18:02:57] 2025-10-13 09:01:55,372 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:02:57] 2025-10-13 09:01:55,935 | INFO     | time since job start (5232s) is within the limit (172800.0s)
[2025-10-13 18:02:57] 2025-10-13 09:01:57,531 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 18:02:57] 2025-10-13 09:01:57,534 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3332.7984375
[2025-10-13 18:02:57] 2025-10-13 09:01:57,537 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6840536928/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 18:02:57] 2025-10-13 09:01:57,538 | INFO     | extracted standard info from prmon json
[2025-10-13 18:02:57] 2025-10-13 09:01:57,538 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 18:02:57] 2025-10-13 09:01:57,538 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 18:02:57] 2025-10-13 09:01:57,538 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 18:02:57] 2025-10-13 09:01:57,539 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 18:02:57] 2025-10-13 09:01:57,540 | INFO     | fitting pss+swap vs Time
[2025-10-13 18:02:57] 2025-10-13 09:01:57,541 | INFO     | sum of square deviations: 147126479.5
[2025-10-13 18:02:57] 2025-10-13 09:01:57,541 | INFO     | sum of deviations: -13405518051.0
[2025-10-13 18:02:57] 2025-10-13 09:01:57,541 | INFO     | mean x: 1760343559.5
[2025-10-13 18:02:57] 2025-10-13 09:01:57,541 | INFO     | mean y: 2593034.9487179485
[2025-10-13 18:02:57] 2025-10-13 09:01:57,541 | INFO     | -- intersect: 160397359789.62286
[2025-10-13 18:02:57] 2025-10-13 09:01:57,541 | INFO     | intersect: 160397359789.62286
[2025-10-13 18:02:57] 2025-10-13 09:01:57,542 | INFO     | chi2: 0.13805291188755964
[2025-10-13 18:02:57] 2025-10-13 09:01:57,542 | INFO     | -- intersect: 160397359789.62286
[2025-10-13 18:02:57] 2025-10-13 09:01:57,542 | INFO     | current memory leak: -91.12 B/s (using 78 data points, chi2=0.14)
[2025-10-13 18:02:57] 2025-10-13 09:01:57,542 | INFO     | could have reported an average CPU frequency of 3320 MHz (6 samples)
[2025-10-13 18:02:57] 2025-10-13 09:01:57,542 | INFO     | ..............................
[2025-10-13 18:02:57] 2025-10-13 09:01:57,542 | INFO     | . Timing measurements:
[2025-10-13 18:02:57] 2025-10-13 09:01:57,542 | INFO     | . get job = 0 s
[2025-10-13 18:02:57] 2025-10-13 09:01:57,543 | INFO     | . initial setup = 20 s
[2025-10-13 18:02:57] 2025-10-13 09:01:57,543 | INFO     | . payload setup = 4 s
[2025-10-13 18:02:57] 2025-10-13 09:01:57,543 | INFO     | . stage-in = 0 s
[2025-10-13 18:02:57] 2025-10-13 09:01:57,543 | INFO     | . payload execution = 5127 s
[2025-10-13 18:02:57] 2025-10-13 09:01:57,543 | INFO     | . stage-out = 0 s
[2025-10-13 18:02:57] 2025-10-13 09:01:57,543 | INFO     | . log creation = 0 s
[2025-10-13 18:02:57] 2025-10-13 09:01:57,543 | INFO     | ..............................
[2025-10-13 18:02:57] 2025-10-13 09:01:57,607 | INFO     | 
[2025-10-13 18:02:57] 2025-10-13 09:01:57,607 | INFO     | job summary report
[2025-10-13 18:02:57] 2025-10-13 09:01:57,608 | INFO     | --------------------------------------------------
[2025-10-13 18:02:57] 2025-10-13 09:01:57,608 | INFO     | PanDA job id: 6840536928
[2025-10-13 18:02:57] 2025-10-13 09:01:57,608 | INFO     | task id: 46676269
[2025-10-13 18:02:57] 2025-10-13 09:01:57,608 | INFO     | errors: (none)
[2025-10-13 18:02:57] 2025-10-13 09:01:57,608 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 18:02:57] 2025-10-13 09:01:57,608 | INFO     | pilot state: finished 
[2025-10-13 18:02:57] 2025-10-13 09:01:57,608 | INFO     | transexitcode: 0
[2025-10-13 18:02:57] 2025-10-13 09:01:57,608 | INFO     | exeerrorcode: 0
[2025-10-13 18:02:57] 2025-10-13 09:01:57,608 | INFO     | exeerrordiag: 
[2025-10-13 18:02:57] 2025-10-13 09:01:57,608 | INFO     | exitcode: 0
[2025-10-13 18:02:57] 2025-10-13 09:01:57,608 | INFO     | exitmsg: OK
[2025-10-13 18:02:57] 2025-10-13 09:01:57,609 | INFO     | cpuconsumptiontime: 28077 s
[2025-10-13 18:02:57] 2025-10-13 09:01:57,609 | INFO     | nevents: 400
[2025-10-13 18:02:57] 2025-10-13 09:01:57,609 | INFO     | neventsw: 0
[2025-10-13 18:02:57] 2025-10-13 09:01:57,609 | INFO     | pid: 4104214
[2025-10-13 18:02:57] 2025-10-13 09:01:57,609 | INFO     | pgrp: 4104214
[2025-10-13 18:02:57] 2025-10-13 09:01:57,609 | INFO     | corecount: 6
[2025-10-13 18:02:57] 2025-10-13 09:01:57,609 | INFO     | event service: False
[2025-10-13 18:02:57] 2025-10-13 09:01:57,609 | INFO     | sizes: {0: 2348686, 1: 2348885, 4: 2349147, 11: 2349175, 5135: 2375567, 5136: 2375566, 5137: 2384748, 5139: 2384804, 5219: 2384998}
[2025-10-13 18:02:57] 2025-10-13 09:01:57,609 | INFO     | --------------------------------------------------
[2025-10-13 18:02:57] 2025-10-13 09:01:57,609 | INFO     | 
[2025-10-13 18:02:57] 2025-10-13 09:01:57,610 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-13 18:02:57] 2025-10-13 09:01:57,624 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,625 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,625 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,625 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,625 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,625 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,625 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,625 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,625 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,625 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,626 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,626 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,626 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,626 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,626 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,626 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,626 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,626 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 18:02:57] 2025-10-13 09:01:57,626 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,626 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 18:02:57] 2025-10-13 09:01:57,627 | INFO     | job 6840536928 has completed (purged errors)
[2025-10-13 18:02:57] 2025-10-13 09:01:57,627 | INFO     | overall cleanup function is called
[2025-10-13 18:02:57] 2025-10-13 09:01:58,634 | INFO     | --- collectZombieJob: --- 10, [4104214]
[2025-10-13 18:02:57] 2025-10-13 09:01:58,634 | INFO     | zombie collector waiting for pid 4104214
[2025-10-13 18:02:57] 2025-10-13 09:01:58,634 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 18:02:57] 2025-10-13 09:01:58,634 | INFO     | collected zombie processes
[2025-10-13 18:02:57] 2025-10-13 09:01:58,635 | INFO     | will attempt to kill all subprocesses of pid=4104214
[2025-10-13 18:02:57] 2025-10-13 09:01:58,723 | INFO     | process IDs to be killed: [4104214] (in reverse order)
[2025-10-13 18:02:57] 2025-10-13 09:01:58,755 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 18:02:57] 2025-10-13 09:01:58,756 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 18:02:57] 2025-10-13 09:01:58,759 | INFO     | did not find any defunct processes belonging to 4104214
[2025-10-13 18:02:57] 2025-10-13 09:01:58,763 | INFO     | did not find any defunct processes belonging to 4104214
[2025-10-13 18:02:57] 2025-10-13 09:01:58,763 | INFO     | ready for new job
[2025-10-13 18:02:57] 2025-10-13 09:01:58,763 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 18:02:57] 2025-10-13 09:01:58,764 | INFO     | ***************************************
[2025-10-13 18:02:57] 2025-10-13 09:01:58,764 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 18:02:57] 2025-10-13 09:01:58,765 | INFO     | ***************************************
[2025-10-13 18:02:57] 2025-10-13 09:01:58,765 | INFO     | 
[2025-10-13 18:02:57] 2025-10-13 09:01:58,766 | INFO     | architecture information:
[2025-10-13 18:02:57] 2025-10-13 09:01:58,766 | INFO     | executing command: cat /etc/os-release
[2025-10-13 18:02:57] 2025-10-13 09:01:58,779 | INFO     | cat /etc/os-release:
[2025-10-13 18:02:57] NAME="CentOS Linux"
[2025-10-13 18:02:57] VERSION="7 (Core)"
[2025-10-13 18:02:57] ID="centos"
[2025-10-13 18:02:57] ID_LIKE="rhel fedora"
[2025-10-13 18:02:57] VERSION_ID="7"
[2025-10-13 18:02:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 18:02:57] ANSI_COLOR="0;31"
[2025-10-13 18:02:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 18:02:57] HOME_URL="https://www.centos.org/"
[2025-10-13 18:02:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 18:02:57] 
[2025-10-13 18:02:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 18:02:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 18:02:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 18:02:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 18:02:57] 
[2025-10-13 18:02:57] 2025-10-13 09:01:58,779 | INFO     | ***************************************
[2025-10-13 18:02:57] 2025-10-13 09:01:59,282 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-13 18:02:57] 2025-10-13 09:01:59,294 | INFO     | sufficient remaining disk space (96606355456 B)
[2025-10-13 18:02:57] 2025-10-13 09:01:59,294 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 18:02:57] 2025-10-13 09:01:59,294 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 18:02:57] 2025-10-13 09:01:59,294 | INFO     | update_server=False
[2025-10-13 18:02:57] 2025-10-13 09:01:59,294 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 18:02:57] 2025-10-13 09:01:59,295 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 18:02:57] 2025-10-13 09:01:59,295 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:02:57] 2025-10-13 09:01:59,295 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:02:57] 2025-10-13 09:01:59,295 | INFO     | aborting loop
[2025-10-13 18:02:57] 2025-10-13 09:01:59,334 | INFO     | all payload control threads have been joined
[2025-10-13 18:02:57] 2025-10-13 09:01:59,366 | INFO     | all data control threads have been joined
[2025-10-13 18:02:57] 2025-10-13 09:01:59,431 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 18:02:57] 2025-10-13 09:02:00,298 | INFO     | [job] queue monitor thread has finished
[2025-10-13 18:02:57] 2025-10-13 09:02:00,300 | INFO     | [job] retrieve thread has finished
[2025-10-13 18:02:57] 2025-10-13 09:02:00,300 | INFO     | [job] job monitor thread has finished
[2025-10-13 18:02:57] 2025-10-13 09:02:00,339 | INFO     | [payload] control thread has finished
[2025-10-13 18:02:57] 2025-10-13 09:02:00,371 | INFO     | [data] control thread has finished
[2025-10-13 18:02:57] 2025-10-13 09:02:00,650 | INFO     | all job control threads have been joined
[2025-10-13 18:02:57] 2025-10-13 09:02:00,786 | INFO     | [job] validate thread has finished
[2025-10-13 18:02:57] 2025-10-13 09:02:00,918 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 18:02:57] 2025-10-13 09:02:00,945 | INFO     | [payload] failed_post thread has finished
[2025-10-13 18:02:57] 2025-10-13 09:02:00,951 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 18:02:57] 2025-10-13 09:02:01,300 | INFO     | [data] copytool_out thread has finished
[2025-10-13 18:02:57] 2025-10-13 09:02:01,535 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 18:02:57] 2025-10-13 09:02:01,576 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 18:02:57] 2025-10-13 09:02:01,590 | INFO     | [data] copytool_in thread has finished
[2025-10-13 18:02:57] 2025-10-13 09:02:01,596 | INFO     | [payload] validate_post thread has finished
[2025-10-13 18:02:57] 2025-10-13 09:02:01,655 | INFO     | [job] control thread has finished
[2025-10-13 18:02:57] 2025-10-13 09:02:03,435 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 18:02:57] 2025-10-13 09:02:29,116 | INFO     | PID=4097471 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 18:02:57] 2025-10-13 09:02:29,117 | INFO     | .. there are 2 such processes running
[2025-10-13 18:02:57] 2025-10-13 09:02:29,117 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 18:02:57] 2025-10-13 09:02:29,117 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 18:02:57] 2025-10-13 09:02:29,117 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 18:02:57] 2025-10-13 09:02:50,668 | INFO     | [monitor] cgroup control has ended
[2025-10-13 18:02:57] 2025-10-13 09:02:52,771 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140640057972544)>', '<ExcThread(monitor, started 140639400339200)>']
[2025-10-13 18:02:57] 2025-10-13 09:02:53,231 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 18:02:57] 2025-10-13 09:02:53,231 | INFO     | [monitor] control thread has ended
[2025-10-13 18:02:57] 2025-10-13 09:02:57,796 | INFO     | all workflow threads have been joined
[2025-10-13 18:02:57] 2025-10-13 09:02:57,796 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 18:02:57] 2025-10-13 09:02:57,796 | INFO     | traces error code: 0
[2025-10-13 18:02:57] 2025-10-13 09:02:57,797 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 18:02:57] 2025-10-13 09:02:57,872 [wrapper] ==== pilot stdout END ====
[2025-10-13 18:02:57] 2025-10-13 09:02:57,874 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 18:02:57] 2025-10-13 09:02:57,876 [wrapper] pilotpid: 4097471
[2025-10-13 18:02:57] 2025-10-13 09:02:57,878 [wrapper] Pilot exit status: 0
[2025-10-13 18:02:57] 2025-10-13 09:02:57,885 [wrapper] pandaids: 6840536928
[2025-10-13 18:02:57] 2025-10-13 09:02:57,909 [wrapper] cleanup supervisor_pilot 4140678 4097472
[2025-10-13 18:02:57] 2025-10-13 09:02:57,911 [wrapper] Test setup, not cleaning
[2025-10-13 18:02:57] 2025-10-13 09:02:57,914 [wrapper] apfmon messages muted
[2025-10-13 18:02:57] 2025-10-13 09:02:57,916 [wrapper] ==== wrapper stdout END ====
[2025-10-13 18:02:57] 2025-10-13 09:02:57,918 [wrapper] ==== wrapper stderr END ====
[2025-10-13 18:02:57]  *** Error codes and diagnostics ***
[2025-10-13 18:02:57]     "exeErrorCode": 0,
[2025-10-13 18:02:57]     "exeErrorDiag": "",
[2025-10-13 18:02:57]     "pilotErrorCode": 0,
[2025-10-13 18:02:57]     "pilotErrorDiag": "",
[2025-10-13 18:02:57]  *** Listing of results directory ***
[2025-10-13 18:02:57] total 403240
[2025-10-13 18:02:57] -rw-r--r--. 1 boinc boinc    557409 Oct 13 03:20 pilot3.tar.gz
[2025-10-13 18:02:57] -rw-r--r--. 1 boinc boinc      5112 Oct 13 03:37 queuedata.json
[2025-10-13 18:02:57] -rwx------. 1 boinc boinc     36292 Oct 13 03:38 runpilot2-wrapper.sh
[2025-10-13 18:02:57] -rw-r--r--. 1 boinc boinc       100 Oct 13 16:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 18:02:57] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 16:34 run_atlas
[2025-10-13 18:02:57] -rw-r--r--. 1 boinc boinc       105 Oct 13 16:34 job.xml
[2025-10-13 18:02:57] -rw-r--r--. 1 boinc boinc      9362 Oct 13 16:34 init_data.xml
[2025-10-13 18:02:57] -rw-r--r--. 2 boinc boinc 220131587 Oct 13 16:34 EVNT.46676267._004413.pool.root.1
[2025-10-13 18:02:57] -rw-r--r--. 2 boinc boinc     15120 Oct 13 16:34 start_atlas.sh
[2025-10-13 18:02:57] drwxrwx--x. 2 boinc boinc        68 Oct 13 16:34 shared
[2025-10-13 18:02:57] -rw-r--r--. 2 boinc boinc    569686 Oct 13 16:34 input.tar.gz
[2025-10-13 18:02:57] -rw-r--r--. 1 boinc boinc         0 Oct 13 16:34 boinc_lockfile
[2025-10-13 18:02:57] -rw-r--r--. 1 boinc boinc      2550 Oct 13 16:34 pandaJob.out
[2025-10-13 18:02:57] -rw-------. 1 boinc boinc    972849 Oct 13 16:34 agis_schedconf.cvmfs.json
[2025-10-13 18:02:57] -rw-------. 1 boinc boinc   1560580 Oct 13 16:34 agis_ddmendpoints.agis.ALL.json
[2025-10-13 18:02:57] drwx------. 5 boinc boinc      4096 Oct 13 16:34 pilot3
[2025-10-13 18:02:57] -rw-r--r--. 1 boinc boinc       529 Oct 13 18:00 boinc_task_state.xml
[2025-10-13 18:02:57] -rw-------. 1 boinc boinc 186736443 Oct 13 18:00 HITS.46676269._086347.pool.root.1
[2025-10-13 18:02:57] -rw-------. 1 boinc boinc      1018 Oct 13 18:00 memory_monitor_summary.json
[2025-10-13 18:02:57] -rw-------. 1 boinc boinc    311664 Oct 13 18:00 log.46676269._086347.job.log.tgz.1
[2025-10-13 18:02:57] -rw-------. 1 boinc boinc      7759 Oct 13 18:01 heartbeat.json
[2025-10-13 18:02:57] -rw-------. 1 boinc boinc        95 Oct 13 18:02 pilot_heartbeat.json
[2025-10-13 18:02:57] -rw-r--r--. 1 boinc boinc        27 Oct 13 18:02 wrapper_checkpoint.txt
[2025-10-13 18:02:57] -rw-r--r--. 1 boinc boinc      8192 Oct 13 18:02 boinc_mmap_file
[2025-10-13 18:02:57] -rw-------. 1 boinc boinc      4823 Oct 13 18:02 pilotlog.txt
[2025-10-13 18:02:57] -rw-------. 1 boinc boinc    766685 Oct 13 18:02 log.46676269._086347.job.log.1
[2025-10-13 18:02:57] -rw-------. 1 boinc boinc       357 Oct 13 18:02 output.list
[2025-10-13 18:02:57] -rw-r--r--. 1 boinc boinc       620 Oct 13 18:02 runtime_log
[2025-10-13 18:02:57] -rw-------. 1 boinc boinc   1095680 Oct 13 18:02 result.tar.gz
[2025-10-13 18:02:57] -rw-r--r--. 1 boinc boinc      8661 Oct 13 18:02 runtime_log.err
[2025-10-13 18:02:57] -rw-------. 1 boinc boinc       642 Oct 13 18:02 7BQLDmT8FS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmW6kNDmY2YbLo.diag
[2025-10-13 18:02:57] -rw-r--r--. 1 boinc boinc     22005 Oct 13 18:02 stderr.txt
[2025-10-13 18:02:57] HITS file was successfully produced:
[2025-10-13 18:02:57] -rw-------. 1 boinc boinc 186736443 Oct 13 18:00 shared/HITS.pool.root.1
[2025-10-13 18:02:57]  *** Contents of shared directory: ***
[2025-10-13 18:02:57] total 398984
[2025-10-13 18:02:57] -rw-r--r--. 2 boinc boinc 220131587 Oct 13 16:34 ATLAS.root_0
[2025-10-13 18:02:57] -rw-r--r--. 2 boinc boinc     15120 Oct 13 16:34 start_atlas.sh
[2025-10-13 18:02:57] -rw-r--r--. 2 boinc boinc    569686 Oct 13 16:34 input.tar.gz
[2025-10-13 18:02:57] -rw-------. 1 boinc boinc 186736443 Oct 13 18:00 HITS.pool.root.1
[2025-10-13 18:02:57] -rw-------. 1 boinc boinc   1095680 Oct 13 18:02 result.tar.gz
18:02:59 (4093686): run_atlas exited; CPU time 28129.990296
18:02:59 (4093686): called boinc_finish(0)

</stderr_txt>
]]>

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