Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:37:14 (3194732): wrapper (7.7.26015): starting
11:37:14 (3194732): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 11:37:14] Arguments: --nthreads 3
[2025-10-13 11:37:14] Threads: 3
[2025-10-13 11:37:14] Checking for CVMFS
[2025-10-13 11:37:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 11:37:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 11:37:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 11:37:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 11:37:14] 2.9.2.0 1494257 5639 82900 151656 3 57 24227158 36864000 0 130560 0 4470126 99.991 192109 850 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 11:37:14] CVMFS is ok
[2025-10-13 11:37:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 11:37:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 11:37:14] Further information can be found at the LHC@home message board.
[2025-10-13 11:37:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 11:37:14] Checking for apptainer binary...
[2025-10-13 11:37:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 11:37:14] Running /usr/bin/apptainer --version
[2025-10-13 11:37:14] apptainer version 1.4.1-1.1
[2025-10-13 11:37:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 11:37:14] thA331a
[2025-10-13 11:37:14] apptainer works
[2025-10-13 11:37:14] Set ATHENA_PROC_NUMBER=3
[2025-10-13 11:37:14] Set ATHENA_CORE_NUMBER=3
[2025-10-13 11:37:14] Starting ATLAS job with PandaID=6840714692
[2025-10-13 11:37:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 12:57:32]  *** The last 200 lines of the pilot log: ***
[2025-10-13 12:57:32] 2025-10-13 10:56:53,715 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 12:57:32] 2025-10-13 10:56:53,715 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 12:57:32] 2025-10-13 10:56:53,715 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 12:57:32] 2025-10-13 10:56:53,715 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 12:57:32] 2025-10-13 10:56:53,715 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 12:57:32] 2025-10-13 10:56:53,715 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 12:57:32] 2025-10-13 10:56:53,715 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 12:57:32] 2025-10-13 10:56:53,715 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 12:57:32] 2025-10-13 10:56:53,715 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 12:57:32] 2025-10-13 10:56:53,715 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 12:57:32] 2025-10-13 10:56:53,716 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 12:57:32] 2025-10-13 10:56:53,716 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 12:57:32] 2025-10-13 10:56:53,716 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 12:57:32] 2025-10-13 10:56:53,716 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 12:57:32] 2025-10-13 10:56:53,716 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 12:57:32] 2025-10-13 10:56:53,716 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 12:57:32] 2025-10-13 10:56:53,716 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 12:57:32] 2025-10-13 10:56:53,716 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 12:57:32] 2025-10-13 10:56:53,716 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 12:57:32] 2025-10-13 10:56:53,716 | INFO     | job 6840714692 has completed (purged errors)
[2025-10-13 12:57:32] 2025-10-13 10:56:53,716 | INFO     | overall cleanup function is called
[2025-10-13 12:57:32] 2025-10-13 10:56:54,722 | INFO     | --- collectZombieJob: --- 10, [3204882]
[2025-10-13 12:57:32] 2025-10-13 10:56:54,723 | INFO     | zombie collector waiting for pid 3204882
[2025-10-13 12:57:32] 2025-10-13 10:56:54,723 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 12:57:32] 2025-10-13 10:56:54,723 | INFO     | collected zombie processes
[2025-10-13 12:57:32] 2025-10-13 10:56:54,723 | INFO     | will attempt to kill all subprocesses of pid=3204882
[2025-10-13 12:57:32] 2025-10-13 10:56:54,766 | INFO     | process IDs to be killed: [3204882] (in reverse order)
[2025-10-13 12:57:32] 2025-10-13 10:56:54,789 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 12:57:32] 2025-10-13 10:56:54,790 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 12:57:32] 2025-10-13 10:56:54,791 | INFO     | did not find any defunct processes belonging to 3204882
[2025-10-13 12:57:32] 2025-10-13 10:56:54,792 | INFO     | did not find any defunct processes belonging to 3204882
[2025-10-13 12:57:32] 2025-10-13 10:56:54,792 | INFO     | ready for new job
[2025-10-13 12:57:32] 2025-10-13 10:56:54,792 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 12:57:32] 2025-10-13 10:56:54,793 | INFO     | ***************************************
[2025-10-13 12:57:32] 2025-10-13 10:56:54,793 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 12:57:32] 2025-10-13 10:56:54,793 | INFO     | ***************************************
[2025-10-13 12:57:32] 2025-10-13 10:56:54,793 | INFO     | 
[2025-10-13 12:57:32] 2025-10-13 10:56:54,793 | INFO     | architecture information:
[2025-10-13 12:57:32] 2025-10-13 10:56:54,793 | INFO     | executing command: cat /etc/os-release
[2025-10-13 12:57:32] 2025-10-13 10:56:54,802 | INFO     | cat /etc/os-release:
[2025-10-13 12:57:32] NAME="CentOS Linux"
[2025-10-13 12:57:32] VERSION="7 (Core)"
[2025-10-13 12:57:32] ID="centos"
[2025-10-13 12:57:32] ID_LIKE="rhel fedora"
[2025-10-13 12:57:32] VERSION_ID="7"
[2025-10-13 12:57:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 12:57:32] ANSI_COLOR="0;31"
[2025-10-13 12:57:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 12:57:32] HOME_URL="https://www.centos.org/"
[2025-10-13 12:57:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 12:57:32] 
[2025-10-13 12:57:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 12:57:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 12:57:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 12:57:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 12:57:32] 
[2025-10-13 12:57:32] 2025-10-13 10:56:54,802 | INFO     | ***************************************
[2025-10-13 12:57:32] 2025-10-13 10:56:55,305 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 12:57:32] 2025-10-13 10:56:55,318 | INFO     | sufficient remaining disk space (335950118912 B)
[2025-10-13 12:57:32] 2025-10-13 10:56:55,318 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 12:57:32] 2025-10-13 10:56:55,318 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 12:57:32] 2025-10-13 10:56:55,318 | INFO     | update_server=False
[2025-10-13 12:57:32] 2025-10-13 10:56:55,318 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 12:57:32] 2025-10-13 10:56:55,318 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:57:32] 2025-10-13 10:56:55,318 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:57:32] 2025-10-13 10:56:55,319 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 12:57:32] 2025-10-13 10:56:55,319 | INFO     | aborting loop
[2025-10-13 12:57:32] 2025-10-13 10:56:55,437 | INFO     | all data control threads have been joined
[2025-10-13 12:57:32] 2025-10-13 10:56:55,640 | INFO     | all job control threads have been joined
[2025-10-13 12:57:32] 2025-10-13 10:56:56,185 | INFO     | all payload control threads have been joined
[2025-10-13 12:57:32] 2025-10-13 10:56:56,324 | INFO     | [job] retrieve thread has finished
[2025-10-13 12:57:32] 2025-10-13 10:56:56,324 | INFO     | [job] queue monitor thread has finished
[2025-10-13 12:57:32] 2025-10-13 10:56:56,325 | INFO     | [job] job monitor thread has finished
[2025-10-13 12:57:32] 2025-10-13 10:56:56,409 | INFO     | [data] copytool_in thread has finished
[2025-10-13 12:57:32] 2025-10-13 10:56:56,442 | INFO     | [data] control thread has finished
[2025-10-13 12:57:32] 2025-10-13 10:56:56,646 | INFO     | [job] control thread has finished
[2025-10-13 12:57:32] 2025-10-13 10:56:56,729 | INFO     | [payload] failed_post thread has finished
[2025-10-13 12:57:32] 2025-10-13 10:56:56,802 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 12:57:32] 2025-10-13 10:56:56,937 | INFO     | [job] validate thread has finished
[2025-10-13 12:57:32] 2025-10-13 10:56:57,040 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 12:57:32] 2025-10-13 10:56:57,046 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 12:57:32] 2025-10-13 10:56:57,191 | INFO     | [payload] control thread has finished
[2025-10-13 12:57:32] 2025-10-13 10:56:57,325 | INFO     | [data] copytool_out thread has finished
[2025-10-13 12:57:32] 2025-10-13 10:56:57,534 | INFO     | [payload] validate_post thread has finished
[2025-10-13 12:57:32] 2025-10-13 10:56:57,574 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 12:57:32] 2025-10-13 10:56:57,593 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 12:57:32] 2025-10-13 10:57:01,600 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 12:57:32] 2025-10-13 10:57:25,269 | INFO     | [monitor] cgroup control has ended
[2025-10-13 12:57:32] 2025-10-13 10:57:25,400 | INFO     | PID=3198450 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 12:57:32] 2025-10-13 10:57:25,400 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 12:57:32] 2025-10-13 10:57:25,400 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 12:57:32] 2025-10-13 10:57:25,400 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 12:57:32] 2025-10-13 10:57:27,038 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140249232205632)>', '<ExcThread(monitor, started 140248415704832)>']
[2025-10-13 12:57:32] 2025-10-13 10:57:27,411 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 12:57:32] 2025-10-13 10:57:27,411 | INFO     | [monitor] control thread has ended
[2025-10-13 12:57:32] 2025-10-13 10:57:32,064 | INFO     | all workflow threads have been joined
[2025-10-13 12:57:32] 2025-10-13 10:57:32,064 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 12:57:32] 2025-10-13 10:57:32,065 | INFO     | traces error code: 0
[2025-10-13 12:57:32] 2025-10-13 10:57:32,065 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 12:57:32] 2025-10-13 10:57:32,114 [wrapper] ==== pilot stdout END ====
[2025-10-13 12:57:32] 2025-10-13 10:57:32,117 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 12:57:32] 2025-10-13 10:57:32,119 [wrapper] pilotpid: 3198450
[2025-10-13 12:57:32] 2025-10-13 10:57:32,121 [wrapper] Pilot exit status: 0
[2025-10-13 12:57:32] 2025-10-13 10:57:32,128 [wrapper] pandaids: 6840714692
[2025-10-13 12:57:32] 2025-10-13 10:57:32,144 [wrapper] cleanup supervisor_pilot 3216823 3198451
[2025-10-13 12:57:32] 2025-10-13 10:57:32,146 [wrapper] Test setup, not cleaning
[2025-10-13 12:57:32] 2025-10-13 10:57:32,148 [wrapper] apfmon messages muted
[2025-10-13 12:57:32] 2025-10-13 10:57:32,150 [wrapper] ==== wrapper stdout END ====
[2025-10-13 12:57:32] 2025-10-13 10:57:32,153 [wrapper] ==== wrapper stderr END ====
[2025-10-13 12:57:32]  *** Error codes and diagnostics ***
[2025-10-13 12:57:32]     "exeErrorCode": 0,
[2025-10-13 12:57:32]     "exeErrorDiag": "",
[2025-10-13 12:57:32]     "pilotErrorCode": 0,
[2025-10-13 12:57:32]     "pilotErrorDiag": "",
[2025-10-13 12:57:32]  *** Listing of results directory ***
[2025-10-13 12:57:32] total 404236
[2025-10-13 12:57:32] -rw-r--r-- 1 boinc boinc    557409 Oct 12 21:50 pilot3.tar.gz
[2025-10-13 12:57:32] -rwx------ 1 boinc boinc     36292 Oct 12 21:59 runpilot2-wrapper.sh
[2025-10-13 12:57:32] -rw-r--r-- 1 boinc boinc      5112 Oct 12 21:59 queuedata.json
[2025-10-13 12:57:32] -rw-r--r-- 1 boinc boinc       100 Oct 13 11:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 12:57:32] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 11:37 run_atlas
[2025-10-13 12:57:32] -rw-r--r-- 1 boinc boinc       105 Oct 13 11:37 job.xml
[2025-10-13 12:57:32] -rw-r--r-- 2 boinc boinc 219575209 Oct 13 11:37 EVNT.46676267._004478.pool.root.1
[2025-10-13 12:57:32] -rw-r--r-- 2 boinc boinc    569677 Oct 13 11:37 input.tar.gz
[2025-10-13 12:57:32] -rw-r--r-- 2 boinc boinc     15120 Oct 13 11:37 start_atlas.sh
[2025-10-13 12:57:32] drwxrwx--x 2 boinc boinc      4096 Oct 13 11:37 shared
[2025-10-13 12:57:32] -rw-r--r-- 1 boinc boinc         0 Oct 13 11:37 boinc_setup_complete
[2025-10-13 12:57:32] -rw-r--r-- 1 boinc boinc      6440 Oct 13 11:37 init_data.xml
[2025-10-13 12:57:32] -rw-r--r-- 1 boinc boinc         0 Oct 13 11:37 boinc_lockfile
[2025-10-13 12:57:32] -rw-r--r-- 1 boinc boinc      2550 Oct 13 11:37 pandaJob.out
[2025-10-13 12:57:32] -rw------- 1 boinc boinc    972849 Oct 13 11:37 agis_schedconf.cvmfs.json
[2025-10-13 12:57:32] -rw------- 1 boinc boinc   1560580 Oct 13 11:37 agis_ddmendpoints.agis.ALL.json
[2025-10-13 12:57:32] drwx------ 5 boinc boinc      4096 Oct 13 11:37 pilot3
[2025-10-13 12:57:32] -rw-r--r-- 1 boinc boinc       530 Oct 13 12:56 boinc_task_state.xml
[2025-10-13 12:57:32] -rw------- 1 boinc boinc 188575879 Oct 13 12:56 HITS.46676269._088088.pool.root.1
[2025-10-13 12:57:32] -rw------- 1 boinc boinc      1015 Oct 13 12:56 memory_monitor_summary.json
[2025-10-13 12:57:32] -rw------- 1 boinc boinc        95 Oct 13 12:56 pilot_heartbeat.json
[2025-10-13 12:57:32] -rw------- 1 boinc boinc    244131 Oct 13 12:56 log.46676269._088088.job.log.tgz.1
[2025-10-13 12:57:32] -rw------- 1 boinc boinc      7762 Oct 13 12:56 heartbeat.json
[2025-10-13 12:57:32] -rw-r--r-- 1 boinc boinc      8192 Oct 13 12:57 boinc_mmap_file
[2025-10-13 12:57:32] -rw-r--r-- 1 boinc boinc        27 Oct 13 12:57 wrapper_checkpoint.txt
[2025-10-13 12:57:32] -rw------- 1 boinc boinc      4752 Oct 13 12:57 pilotlog.txt
[2025-10-13 12:57:32] -rw------- 1 boinc boinc    702900 Oct 13 12:57 log.46676269._088088.job.log.1
[2025-10-13 12:57:32] -rw------- 1 boinc boinc       357 Oct 13 12:57 output.list
[2025-10-13 12:57:32] -rw-r--r-- 1 boinc boinc       620 Oct 13 12:57 runtime_log
[2025-10-13 12:57:32] -rw------- 1 boinc boinc    962560 Oct 13 12:57 result.tar.gz
[2025-10-13 12:57:32] -rw-r--r-- 1 boinc boinc      8782 Oct 13 12:57 runtime_log.err
[2025-10-13 12:57:32] -rw------- 1 boinc boinc       659 Oct 13 12:57 NQUNDm0OHS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmltUMDmrBRn0n.diag
[2025-10-13 12:57:32] -rw-r--r-- 1 boinc boinc     12739 Oct 13 12:57 stderr.txt
[2025-10-13 12:57:32] HITS file was successfully produced:
[2025-10-13 12:57:32] -rw------- 1 boinc boinc 188575879 Oct 13 12:56 shared/HITS.pool.root.1
[2025-10-13 12:57:32]  *** Contents of shared directory: ***
[2025-10-13 12:57:32] total 400116
[2025-10-13 12:57:32] -rw-r--r-- 2 boinc boinc 219575209 Oct 13 11:37 ATLAS.root_0
[2025-10-13 12:57:32] -rw-r--r-- 2 boinc boinc    569677 Oct 13 11:37 input.tar.gz
[2025-10-13 12:57:32] -rw-r--r-- 2 boinc boinc     15120 Oct 13 11:37 start_atlas.sh
[2025-10-13 12:57:32] -rw------- 1 boinc boinc 188575879 Oct 13 12:56 HITS.pool.root.1
[2025-10-13 12:57:32] -rw------- 1 boinc boinc    962560 Oct 13 12:57 result.tar.gz
12:57:33 (3194732): run_atlas exited; CPU time 13696.254641
12:57:33 (3194732): called boinc_finish(0)

</stderr_txt>
]]>

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