Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
05:15:50 (298473): wrapper (7.7.26015): starting
05:15:50 (298473): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 05:15:50] Arguments: --nthreads 12
[2025-10-13 05:15:50] Threads: 12
[2025-10-13 05:15:50] Checking for CVMFS
[2025-10-13 05:15:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:15:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:15:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:15:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:15:50] 2.13.2.0 258733 30 45744 151649 1 188 2467122 4096001 94 130560 0 111147 99.999 72 47 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-13 05:15:50] CVMFS is ok
[2025-10-13 05:15:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:15:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:15:50] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-13 05:15:50] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-13 05:15:50] Further information can be found at the LHC@home message board.
[2025-10-13 05:15:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:15:50] Checking for apptainer binary...
[2025-10-13 05:15:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:15:50] Running /usr/bin/apptainer --version
[2025-10-13 05:15:50] apptainer version 1.4.3
[2025-10-13 05:15:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:15:50] test-run
[2025-10-13 05:15:50] apptainer works
[2025-10-13 05:15:50] Set ATHENA_PROC_NUMBER=12
[2025-10-13 05:15:50] Set ATHENA_CORE_NUMBER=12
[2025-10-13 05:15:50] Starting ATLAS job with PandaID=6840714687
[2025-10-13 05:15:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:45:06]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:45:06]  lfn=log.46676269._088083.job.log.tgz.1
[2025-10-13 05:45:06]  mtime=0
[2025-10-13 05:45:06]  protocol_id=None
[2025-10-13 05:45:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 05:45:06]  replicas=None
[2025-10-13 05:45:06]  scope=mc23_13p6TeV
[2025-10-13 05:45:06]  status=None
[2025-10-13 05:45:06]  status_code=0
[2025-10-13 05:45:06]  storage_token=
[2025-10-13 05:45:06]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6840714687/log.46676269._088083.job.log.tgz.1
[2025-10-13 05:45:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/f6/log.46676269._088083.job.log.tgz.1
[2025-10-13 05:45:06]  workdir=None
[2025-10-13 05:45:06] ]
[2025-10-13 05:45:06] 2025-10-13 05:44:08,948 | INFO     | transferring file log.46676269._088083.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6840714687/log.46676269._088083.job.log.tgz.1 to /var/lib/boinc
[2025-10-13 05:45:06] 2025-10-13 05:44:08,948 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6840714687/log.46676269._088083.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.466762
[2025-10-13 05:45:06] 2025-10-13 05:44:08,953 | INFO     | adding to output.list: log.46676269._088083.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/f6/log.46676269._088083.job.log.tg
[2025-10-13 05:45:06] 2025-10-13 05:44:08,953 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 05:45:06] 2025-10-13 05:44:08,953 | INFO     | summary of transferred files:
[2025-10-13 05:45:06] 2025-10-13 05:44:08,953 | INFO     |  -- lfn=log.46676269._088083.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 05:45:06] 2025-10-13 05:44:08,953 | INFO     | stage-out finished correctly
[2025-10-13 05:45:06] 2025-10-13 05:44:09,670 | INFO     | time since job start (1694s) is within the limit (172800.0s)
[2025-10-13 05:45:06] 2025-10-13 05:44:10,687 | INFO     | monitor loop #133: job 0:6840714687 is in state 'finished'
[2025-10-13 05:45:06] 2025-10-13 05:44:10,687 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:45:06] 2025-10-13 05:44:10,992 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 05:45:06] 2025-10-13 05:44:11,675 | INFO     | time since job start (1696s) is within the limit (172800.0s)
[2025-10-13 05:45:06] 2025-10-13 05:44:12,260 | INFO     | job 6840714687 has state=finished
[2025-10-13 05:45:06] 2025-10-13 05:44:12,260 | INFO     | preparing for final server update for job 6840714687 in state='finished'
[2025-10-13 05:45:06] 2025-10-13 05:44:12,261 | INFO     | this job has now completed (state=finished)
[2025-10-13 05:45:06] 2025-10-13 05:44:12,261 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 05:45:06] 2025-10-13 05:44:12,261 | INFO     | log transfer has been attempted: DONE
[2025-10-13 05:45:06] 2025-10-13 05:44:12,261 | INFO     | job 6840714687 has finished - writing final server update
[2025-10-13 05:45:06] 2025-10-13 05:44:12,261 | INFO     | total number of processed events: 400 (read)
[2025-10-13 05:45:06] 2025-10-13 05:44:12,262 | INFO     | executing command: lscpu
[2025-10-13 05:45:06] 2025-10-13 05:44:12,272 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 05:45:06] 2025-10-13 05:44:13,190 | INFO     | monitor loop #134: job 0:6840714687 is in state 'finished'
[2025-10-13 05:45:06] 2025-10-13 05:44:13,190 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:45:06] 2025-10-13 05:44:13,314 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 05:45:06] 2025-10-13 05:44:13,315 | INFO     | found 32 cores (32 cores per socket, 1 socket) , CPU MHz: 4299.979999999998
[2025-10-13 05:45:06] 2025-10-13 05:44:13,317 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6840714687/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:45:06] 2025-10-13 05:44:13,317 | INFO     | extracted standard info from prmon json
[2025-10-13 05:45:06] 2025-10-13 05:44:13,317 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:45:06] 2025-10-13 05:44:13,317 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:45:06] 2025-10-13 05:44:13,317 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:45:06] 2025-10-13 05:44:13,317 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:45:06] 2025-10-13 05:44:13,318 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:45:06] 2025-10-13 05:44:13,318 | INFO     | sum of square deviations: 2865170.0
[2025-10-13 05:45:06] 2025-10-13 05:44:13,318 | INFO     | sum of deviations: 184091290.0
[2025-10-13 05:45:06] 2025-10-13 05:44:13,318 | INFO     | mean x: 1760333486.0
[2025-10-13 05:45:06] 2025-10-13 05:44:13,318 | INFO     | mean y: 2761554.6666666665
[2025-10-13 05:45:06] 2025-10-13 05:44:13,318 | INFO     | -- intersect: -113101194674.08658
[2025-10-13 05:45:06] 2025-10-13 05:44:13,318 | INFO     | intersect: -113101194674.08658
[2025-10-13 05:45:06] 2025-10-13 05:44:13,318 | INFO     | chi2: 0.0008045165856077549
[2025-10-13 05:45:06] 2025-10-13 05:44:13,318 | INFO     | -- intersect: -113101194674.08658
[2025-10-13 05:45:06] 2025-10-13 05:44:13,318 | INFO     | current memory leak: 64.25 B/s (using 21 data points, chi2=0.00)
[2025-10-13 05:45:06] 2025-10-13 05:44:13,318 | INFO     | could have reported an average CPU frequency of 4299 MHz (4 samples)
[2025-10-13 05:45:06] 2025-10-13 05:44:13,318 | INFO     | ..............................
[2025-10-13 05:45:06] 2025-10-13 05:44:13,318 | INFO     | . Timing measurements:
[2025-10-13 05:45:06] 2025-10-13 05:44:13,318 | INFO     | . get job = 0 s
[2025-10-13 05:45:06] 2025-10-13 05:44:13,318 | INFO     | . initial setup = 2 s
[2025-10-13 05:45:06] 2025-10-13 05:44:13,318 | INFO     | . payload setup = 1 s
[2025-10-13 05:45:06] 2025-10-13 05:44:13,318 | INFO     | . stage-in = 0 s
[2025-10-13 05:45:06] 2025-10-13 05:44:13,318 | INFO     | . payload execution = 1676 s
[2025-10-13 05:45:06] 2025-10-13 05:44:13,319 | INFO     | . stage-out = 0 s
[2025-10-13 05:45:06] 2025-10-13 05:44:13,319 | INFO     | . log creation = 0 s
[2025-10-13 05:45:06] 2025-10-13 05:44:13,319 | INFO     | ..............................
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | 
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | job summary report
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | --------------------------------------------------
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | PanDA job id: 6840714687
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | task id: 46676269
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | errors: (none)
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | pilot state: finished 
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | transexitcode: 0
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | exeerrorcode: 0
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | exeerrordiag: 
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | exitcode: 0
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | exitmsg: OK
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | cpuconsumptiontime: 16221 s
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | nevents: 400
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | neventsw: 0
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | pid: 308973
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | pgrp: 308973
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | corecount: 12
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | event service: False
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | sizes: {0: 2348691, 1: 2348890, 2: 2349152, 11: 2349180, 1681: 2374032, 1682: 2383044, 1684: 2383228, 1686: 2383422}
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | --------------------------------------------------
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | 
[2025-10-13 05:45:06] 2025-10-13 05:44:13,433 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | job 6840714687 has completed (purged errors)
[2025-10-13 05:45:06] 2025-10-13 05:44:13,440 | INFO     | overall cleanup function is called
[2025-10-13 05:45:06] 2025-10-13 05:44:14,446 | INFO     | --- collectZombieJob: --- 10, [308973]
[2025-10-13 05:45:06] 2025-10-13 05:44:14,446 | INFO     | zombie collector waiting for pid 308973
[2025-10-13 05:45:06] 2025-10-13 05:44:14,446 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:45:06] 2025-10-13 05:44:14,446 | INFO     | collected zombie processes
[2025-10-13 05:45:06] 2025-10-13 05:44:14,446 | INFO     | will attempt to kill all subprocesses of pid=308973
[2025-10-13 05:45:06] 2025-10-13 05:44:14,462 | INFO     | process IDs to be killed: [308973] (in reverse order)
[2025-10-13 05:45:06] 2025-10-13 05:44:14,474 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:45:06] 2025-10-13 05:44:14,474 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:45:06] 2025-10-13 05:44:14,475 | INFO     | did not find any defunct processes belonging to 308973
[2025-10-13 05:45:06] 2025-10-13 05:44:14,475 | INFO     | did not find any defunct processes belonging to 308973
[2025-10-13 05:45:06] 2025-10-13 05:44:14,475 | INFO     | ready for new job
[2025-10-13 05:45:06] 2025-10-13 05:44:14,475 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:45:06] 2025-10-13 05:44:14,476 | INFO     | ***************************************
[2025-10-13 05:45:06] 2025-10-13 05:44:14,476 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:45:06] 2025-10-13 05:44:14,476 | INFO     | ***************************************
[2025-10-13 05:45:06] 2025-10-13 05:44:14,476 | INFO     | 
[2025-10-13 05:45:06] 2025-10-13 05:44:14,476 | INFO     | pilot is running in a VM
[2025-10-13 05:45:06] 2025-10-13 05:44:14,476 | INFO     | architecture information:
[2025-10-13 05:45:06] 2025-10-13 05:44:14,476 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:45:06] 2025-10-13 05:44:14,481 | INFO     | cat /etc/os-release:
[2025-10-13 05:45:06] NAME="CentOS Linux"
[2025-10-13 05:45:06] VERSION="7 (Core)"
[2025-10-13 05:45:06] ID="centos"
[2025-10-13 05:45:06] ID_LIKE="rhel fedora"
[2025-10-13 05:45:06] VERSION_ID="7"
[2025-10-13 05:45:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:45:06] ANSI_COLOR="0;31"
[2025-10-13 05:45:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:45:06] HOME_URL="https://www.centos.org/"
[2025-10-13 05:45:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:45:06] 
[2025-10-13 05:45:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:45:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:45:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:45:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:45:06] 
[2025-10-13 05:45:06] 2025-10-13 05:44:14,482 | INFO     | ***************************************
[2025-10-13 05:45:06] 2025-10-13 05:44:14,984 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-10-13 05:45:06] 2025-10-13 05:44:14,993 | INFO     | sufficient remaining disk space (25386024960 B)
[2025-10-13 05:45:06] 2025-10-13 05:44:14,993 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:45:06] 2025-10-13 05:44:14,994 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:45:06] 2025-10-13 05:44:14,994 | INFO     | update_server=False
[2025-10-13 05:45:06] 2025-10-13 05:44:14,994 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:45:06] 2025-10-13 05:44:14,994 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:45:06] 2025-10-13 05:44:14,997 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:45:06] 2025-10-13 05:44:14,997 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:45:06] 2025-10-13 05:44:14,998 | INFO     | aborting loop
[2025-10-13 05:45:06] 2025-10-13 05:44:15,093 | INFO     | all data control threads have been joined
[2025-10-13 05:45:06] 2025-10-13 05:44:15,267 | INFO     | all payload control threads have been joined
[2025-10-13 05:45:06] 2025-10-13 05:44:15,479 | INFO     | all job control threads have been joined
[2025-10-13 05:45:06] 2025-10-13 05:44:15,998 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:45:06] 2025-10-13 05:44:15,999 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:45:06] 2025-10-13 05:44:16,005 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:45:06] 2025-10-13 05:44:16,021 | INFO     | [job] validate thread has finished
[2025-10-13 05:45:06] 2025-10-13 05:44:16,057 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:45:06] 2025-10-13 05:44:16,099 | INFO     | [data] control thread has finished
[2025-10-13 05:45:06] 2025-10-13 05:44:16,111 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:45:06] 2025-10-13 05:44:16,160 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:45:06] 2025-10-13 05:44:16,272 | INFO     | [payload] control thread has finished
[2025-10-13 05:45:06] 2025-10-13 05:44:16,484 | INFO     | [job] control thread has finished
[2025-10-13 05:45:06] 2025-10-13 05:44:16,992 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:45:06] 2025-10-13 05:44:17,005 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:45:06] 2025-10-13 05:44:17,016 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:45:06] 2025-10-13 05:44:17,220 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:45:06] 2025-10-13 05:44:17,255 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:45:06] 2025-10-13 05:44:17,341 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:45:06] 2025-10-13 05:44:21,017 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:45:06] 2025-10-13 05:44:44,764 | INFO     | PID=302326 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 05:45:06] 2025-10-13 05:44:44,764 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:45:06] 2025-10-13 05:44:44,764 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:45:06] 2025-10-13 05:44:44,764 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:45:06] 2025-10-13 05:44:58,086 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:45:06] 2025-10-13 05:44:58,290 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140085378418496)>', '<ExcThread(monitor, started 140085014013696)>']
[2025-10-13 05:45:06] 2025-10-13 05:44:58,836 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:45:06] 2025-10-13 05:44:58,836 | INFO     | [monitor] control thread has ended
[2025-10-13 05:45:06] 2025-10-13 05:45:03,315 | INFO     | all workflow threads have been joined
[2025-10-13 05:45:06] 2025-10-13 05:45:03,315 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:45:06] 2025-10-13 05:45:03,315 | INFO     | traces error code: 0
[2025-10-13 05:45:06] 2025-10-13 05:45:03,315 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:45:06] 2025-10-13 05:45:03,340 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:45:06] 2025-10-13 05:45:03,341 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:45:06] 2025-10-13 05:45:03,342 [wrapper] pilotpid: 302326
[2025-10-13 05:45:06] 2025-10-13 05:45:03,342 [wrapper] Pilot exit status: 0
[2025-10-13 05:45:06] 2025-10-13 05:45:03,345 [wrapper] pandaids: 6840714687
[2025-10-13 05:45:06] 2025-10-13 05:45:03,351 [wrapper] cleanup supervisor_pilot  333264 302327
[2025-10-13 05:45:06] 2025-10-13 05:45:03,352 [wrapper] Test setup, not cleaning
[2025-10-13 05:45:06] 2025-10-13 05:45:03,353 [wrapper] apfmon messages muted
[2025-10-13 05:45:06] 2025-10-13 05:45:03,353 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:45:06] 2025-10-13 05:45:03,354 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:45:06]  *** Error codes and diagnostics ***
[2025-10-13 05:45:06]     "exeErrorCode": 0,
[2025-10-13 05:45:06]     "exeErrorDiag": "",
[2025-10-13 05:45:06]     "pilotErrorCode": 0,
[2025-10-13 05:45:06]     "pilotErrorDiag": "",
[2025-10-13 05:45:06]  *** Listing of results directory ***
[2025-10-13 05:45:06] total 413876
[2025-10-13 05:45:06] -rw-r--r-- 1 boinc boinc    557409 Oct 12 19:50 pilot3.tar.gz
[2025-10-13 05:45:06] -rwx------ 1 boinc boinc     36292 Oct 12 19:59 runpilot2-wrapper.sh
[2025-10-13 05:45:06] -rw-r--r-- 1 boinc boinc      5112 Oct 12 19:59 queuedata.json
[2025-10-13 05:45:06] -rw-r--r-- 1 boinc boinc       100 Oct 13 05:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:45:06] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 05:15 run_atlas
[2025-10-13 05:45:06] -rw-r--r-- 1 boinc boinc       105 Oct 13 05:15 job.xml
[2025-10-13 05:45:06] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:15 start_atlas.sh
[2025-10-13 05:45:06] drwxrwx--x 2 boinc boinc      4096 Oct 13 05:15 shared
[2025-10-13 05:45:06] -rw-r--r-- 2 boinc boinc    569678 Oct 13 05:15 input.tar.gz
[2025-10-13 05:45:06] -rw-r--r-- 1 boinc boinc      6938 Oct 13 05:15 init_data.xml
[2025-10-13 05:45:06] -rw-r--r-- 2 boinc boinc 219575209 Oct 13 05:15 EVNT.46676267._004478.pool.root.1
[2025-10-13 05:45:06] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:15 boinc_lockfile
[2025-10-13 05:45:06] -rw-r--r-- 1 boinc boinc      2549 Oct 13 05:15 pandaJob.out
[2025-10-13 05:45:06] -rw------- 1 boinc boinc    974365 Oct 13 05:15 agis_schedconf.cvmfs.json
[2025-10-13 05:45:06] -rw------- 1 boinc boinc   1560580 Oct 13 05:15 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:45:06] drwx------ 5 boinc boinc      4096 Oct 13 05:15 pilot3
[2025-10-13 05:45:06] -rw-r--r-- 1 boinc boinc       529 Oct 13 05:43 boinc_task_state.xml
[2025-10-13 05:45:06] -rw------- 1 boinc boinc 199082773 Oct 13 05:43 HITS.46676269._088083.pool.root.1
[2025-10-13 05:45:06] -rw------- 1 boinc boinc        95 Oct 13 05:44 pilot_heartbeat.json
[2025-10-13 05:45:06] -rw------- 1 boinc boinc      1022 Oct 13 05:44 memory_monitor_summary.json
[2025-10-13 05:45:06] -rw------- 1 boinc boinc    330833 Oct 13 05:44 log.46676269._088083.job.log.tgz.1
[2025-10-13 05:45:06] -rw------- 1 boinc boinc      7735 Oct 13 05:44 heartbeat.json
[2025-10-13 05:45:06] -rw------- 1 boinc boinc      4816 Oct 13 05:45 pilotlog.txt
[2025-10-13 05:45:06] -rw------- 1 boinc boinc    290645 Oct 13 05:45 log.46676269._088083.job.log.1
[2025-10-13 05:45:06] -rw------- 1 boinc boinc       357 Oct 13 05:45 output.list
[2025-10-13 05:45:06] -rw-r--r-- 1 boinc boinc       620 Oct 13 05:45 runtime_log
[2025-10-13 05:45:06] -rw------- 1 boinc boinc    645120 Oct 13 05:45 result.tar.gz
[2025-10-13 05:45:06] -rw------- 1 boinc boinc       641 Oct 13 05:45 SxINDm0OHS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmgtUMDmk3Kzln.diag
[2025-10-13 05:45:06] -rw-r--r-- 1 boinc boinc      8762 Oct 13 05:45 runtime_log.err
[2025-10-13 05:45:06] -rw-r--r-- 1 boinc boinc      8192 Oct 13 05:45 boinc_mmap_file
[2025-10-13 05:45:06] -rw-r--r-- 1 boinc boinc        27 Oct 13 05:45 wrapper_checkpoint.txt
[2025-10-13 05:45:06] -rw-r--r-- 1 boinc boinc     21817 Oct 13 05:45 stderr.txt
[2025-10-13 05:45:06] HITS file was successfully produced:
[2025-10-13 05:45:06] -rw------- 1 boinc boinc 199082773 Oct 13 05:43 shared/HITS.pool.root.1
[2025-10-13 05:45:06]  *** Contents of shared directory: ***
[2025-10-13 05:45:06] total 410068
[2025-10-13 05:45:06] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:15 start_atlas.sh
[2025-10-13 05:45:06] -rw-r--r-- 2 boinc boinc    569678 Oct 13 05:15 input.tar.gz
[2025-10-13 05:45:06] -rw-r--r-- 2 boinc boinc 219575209 Oct 13 05:15 ATLAS.root_0
[2025-10-13 05:45:06] -rw------- 1 boinc boinc 199082773 Oct 13 05:43 HITS.pool.root.1
[2025-10-13 05:45:06] -rw------- 1 boinc boinc    645120 Oct 13 05:45 result.tar.gz
05:45:08 (298473): run_atlas exited; CPU time 16226.050789
05:45:08 (298473): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN