Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
04:48:04 (276245): wrapper (7.7.26015): starting
04:48:04 (276245): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 04:48:04] Arguments: --nthreads 12
[2025-10-13 04:48:04] Threads: 12
[2025-10-13 04:48:04] Checking for CVMFS
[2025-10-13 04:48:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 04:48:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 04:48:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 04:48:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 04:48:04] 2.13.2.0 258733 3 43372 151649 0 186 2466883 4096001 862 130560 0 45790 99.998 68 102 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-13 04:48:04] CVMFS is ok
[2025-10-13 04:48:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 04:48:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 04:48:04] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-13 04:48:04] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-13 04:48:04] Further information can be found at the LHC@home message board.
[2025-10-13 04:48:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 04:48:04] Checking for apptainer binary...
[2025-10-13 04:48:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 04:48:04] Running /usr/bin/apptainer --version
[2025-10-13 04:48:04] apptainer version 1.4.3
[2025-10-13 04:48:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 04:48:04] test-run
[2025-10-13 04:48:04] apptainer works
[2025-10-13 04:48:04] Set ATHENA_PROC_NUMBER=12
[2025-10-13 04:48:04] Set ATHENA_CORE_NUMBER=12
[2025-10-13 04:48:05] Starting ATLAS job with PandaID=6840714589
[2025-10-13 04:48:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/25 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:16:18]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:16:18] 2025-10-13 05:15:37,421 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 05:16:18] 2025-10-13 05:15:37,421 | INFO     | summary of transferred files:
[2025-10-13 05:16:18] 2025-10-13 05:15:37,421 | INFO     |  -- lfn=log.46676269._087985.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 05:16:18] 2025-10-13 05:15:37,421 | INFO     | stage-out finished correctly
[2025-10-13 05:16:18] 2025-10-13 05:15:38,561 | WARNING  | process 286741 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 05:16:18] 2025-10-13 05:15:38,561 | INFO     | using path: /var/lib/boinc-client/slots/25/PanDA_Pilot-6840714589/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:16:18] 2025-10-13 05:15:38,561 | INFO     | using path: /var/lib/boinc-client/slots/25/PanDA_Pilot-6840714589/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:16:18] 2025-10-13 05:15:38,561 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-13 05:16:18] 2025-10-13 05:15:38,561 | WARNING  | maxPSS not found in memory monitor output
[2025-10-13 05:16:18] 2025-10-13 05:15:38,561 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3879400 B
[2025-10-13 05:16:18] 2025-10-13 05:15:38,561 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15667 B
[2025-10-13 05:16:18] 2025-10-13 05:15:38,561 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/25
[2025-10-13 05:16:18] 2025-10-13 05:15:38,566 | INFO     | sufficient remaining disk space (25375539200 B)
[2025-10-13 05:16:18] 2025-10-13 05:15:38,566 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-13 05:16:18] 2025-10-13 05:15:38,566 | INFO     | size of work directory /var/lib/boinc-client/slots/25/PanDA_Pilot-6840714589: 4157248 B (within 2537553920 B limit)
[2025-10-13 05:16:18] 2025-10-13 05:15:38,566 | INFO     | pfn file=/var/lib/boinc-client/slots/25/PanDA_Pilot-6840714589/HITS.46676269._087985.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-13 05:16:18] 2025-10-13 05:15:38,566 | INFO     | total size of present files: 0 B (workdir size: 4157248 B)
[2025-10-13 05:16:18] 2025-10-13 05:15:38,566 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/25/PanDA_Pilot-6840714589/HITS.46676269._087985.pool.root.1 since it does not exist
[2025-10-13 05:16:18] 2025-10-13 05:15:38,578 | INFO     | number of running child processes to parent process 286741: 1
[2025-10-13 05:16:18] 2025-10-13 05:15:38,578 | INFO     | maximum number of monitored processes: 6
[2025-10-13 05:16:18] 2025-10-13 05:15:39,354 | INFO     | time since job start (1650s) is within the limit (172800.0s)
[2025-10-13 05:16:18] 2025-10-13 05:15:39,777 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 05:16:18] 2025-10-13 05:15:41,081 | INFO     | monitor loop #130: job 0:6840714589 is in state 'finished'
[2025-10-13 05:16:18] 2025-10-13 05:15:41,081 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:16:18] 2025-10-13 05:15:41,360 | INFO     | time since job start (1652s) is within the limit (172800.0s)
[2025-10-13 05:16:18] 2025-10-13 05:15:41,901 | INFO     | job 6840714589 has state=finished
[2025-10-13 05:16:18] 2025-10-13 05:15:41,902 | INFO     | preparing for final server update for job 6840714589 in state='finished'
[2025-10-13 05:16:18] 2025-10-13 05:15:41,902 | INFO     | this job has now completed (state=finished)
[2025-10-13 05:16:18] 2025-10-13 05:15:41,902 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 05:16:18] 2025-10-13 05:15:41,902 | INFO     | log transfer has been attempted: DONE
[2025-10-13 05:16:18] 2025-10-13 05:15:41,902 | INFO     | job 6840714589 has finished - writing final server update
[2025-10-13 05:16:18] 2025-10-13 05:15:41,902 | INFO     | total number of processed events: 400 (read)
[2025-10-13 05:16:18] 2025-10-13 05:15:41,903 | INFO     | executing command: lscpu
[2025-10-13 05:16:18] 2025-10-13 05:15:41,909 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 05:16:18] 2025-10-13 05:15:42,675 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 05:16:18] 2025-10-13 05:15:42,676 | INFO     | found 32 cores (32 cores per socket, 1 socket) , CPU MHz: 4299.979999999998
[2025-10-13 05:16:18] 2025-10-13 05:15:42,677 | INFO     | using path: /var/lib/boinc-client/slots/25/PanDA_Pilot-6840714589/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:16:18] 2025-10-13 05:15:42,677 | INFO     | extracted standard info from prmon json
[2025-10-13 05:16:18] 2025-10-13 05:15:42,677 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:16:18] 2025-10-13 05:15:42,677 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:16:18] 2025-10-13 05:15:42,677 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:16:18] 2025-10-13 05:15:42,677 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:16:18] 2025-10-13 05:15:42,677 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:16:18] 2025-10-13 05:15:42,677 | INFO     | sum of square deviations: 2474465.0
[2025-10-13 05:16:18] 2025-10-13 05:15:42,677 | INFO     | sum of deviations: 443991428.0
[2025-10-13 05:16:18] 2025-10-13 05:15:42,677 | INFO     | mean x: 1760331788.5
[2025-10-13 05:16:18] 2025-10-13 05:15:42,677 | INFO     | mean y: 2865184.5
[2025-10-13 05:16:18] 2025-10-13 05:15:42,677 | INFO     | -- intersect: -315852167935.75385
[2025-10-13 05:16:18] 2025-10-13 05:15:42,677 | INFO     | intersect: -315852167935.75385
[2025-10-13 05:16:18] 2025-10-13 05:15:42,677 | INFO     | chi2: 0.027986926460949156
[2025-10-13 05:16:18] 2025-10-13 05:15:42,677 | INFO     | -- intersect: -315852167935.75385
[2025-10-13 05:16:18] 2025-10-13 05:15:42,677 | INFO     | current memory leak: 179.43 B/s (using 20 data points, chi2=0.03)
[2025-10-13 05:16:18] 2025-10-13 05:15:42,678 | INFO     | could have reported an average CPU frequency of 4299 MHz (4 samples)
[2025-10-13 05:16:18] 2025-10-13 05:15:42,678 | INFO     | ..............................
[2025-10-13 05:16:18] 2025-10-13 05:15:42,678 | INFO     | . Timing measurements:
[2025-10-13 05:16:18] 2025-10-13 05:15:42,678 | INFO     | . get job = 0 s
[2025-10-13 05:16:18] 2025-10-13 05:15:42,678 | INFO     | . initial setup = 2 s
[2025-10-13 05:16:18] 2025-10-13 05:15:42,678 | INFO     | . payload setup = 1 s
[2025-10-13 05:16:18] 2025-10-13 05:15:42,678 | INFO     | . stage-in = 0 s
[2025-10-13 05:16:18] 2025-10-13 05:15:42,678 | INFO     | . payload execution = 1631 s
[2025-10-13 05:16:18] 2025-10-13 05:15:42,678 | INFO     | . stage-out = 0 s
[2025-10-13 05:16:18] 2025-10-13 05:15:42,678 | INFO     | . log creation = 0 s
[2025-10-13 05:16:18] 2025-10-13 05:15:42,678 | INFO     | ..............................
[2025-10-13 05:16:18] 2025-10-13 05:15:42,695 | INFO     | 
[2025-10-13 05:16:18] 2025-10-13 05:15:42,695 | INFO     | job summary report
[2025-10-13 05:16:18] 2025-10-13 05:15:42,695 | INFO     | --------------------------------------------------
[2025-10-13 05:16:18] 2025-10-13 05:15:42,695 | INFO     | PanDA job id: 6840714589
[2025-10-13 05:16:18] 2025-10-13 05:15:42,695 | INFO     | task id: 46676269
[2025-10-13 05:16:18] 2025-10-13 05:15:42,695 | INFO     | errors: (none)
[2025-10-13 05:16:18] 2025-10-13 05:15:42,695 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:16:18] 2025-10-13 05:15:42,695 | INFO     | pilot state: finished 
[2025-10-13 05:16:18] 2025-10-13 05:15:42,695 | INFO     | transexitcode: 0
[2025-10-13 05:16:18] 2025-10-13 05:15:42,695 | INFO     | exeerrorcode: 0
[2025-10-13 05:16:18] 2025-10-13 05:15:42,695 | INFO     | exeerrordiag: 
[2025-10-13 05:16:18] 2025-10-13 05:15:42,695 | INFO     | exitcode: 0
[2025-10-13 05:16:18] 2025-10-13 05:15:42,695 | INFO     | exitmsg: OK
[2025-10-13 05:16:18] 2025-10-13 05:15:42,695 | INFO     | cpuconsumptiontime: 15425 s
[2025-10-13 05:16:18] 2025-10-13 05:15:42,696 | INFO     | nevents: 400
[2025-10-13 05:16:18] 2025-10-13 05:15:42,696 | INFO     | neventsw: 0
[2025-10-13 05:16:18] 2025-10-13 05:15:42,696 | INFO     | pid: 286741
[2025-10-13 05:16:18] 2025-10-13 05:15:42,696 | INFO     | pgrp: 286741
[2025-10-13 05:16:18] 2025-10-13 05:15:42,696 | INFO     | corecount: 12
[2025-10-13 05:16:18] 2025-10-13 05:15:42,696 | INFO     | event service: False
[2025-10-13 05:16:18] 2025-10-13 05:15:42,696 | INFO     | sizes: {0: 2348865, 1: 2349127, 11: 2349155, 1635: 2373981, 1636: 2382995, 1638: 2383079, 1641: 2383401}
[2025-10-13 05:16:18] 2025-10-13 05:15:42,696 | INFO     | --------------------------------------------------
[2025-10-13 05:16:18] 2025-10-13 05:15:42,696 | INFO     | 
[2025-10-13 05:16:18] 2025-10-13 05:15:42,696 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/25
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | job 6840714589 has completed (purged errors)
[2025-10-13 05:16:18] 2025-10-13 05:15:42,701 | INFO     | overall cleanup function is called
[2025-10-13 05:16:18] 2025-10-13 05:15:43,707 | INFO     | --- collectZombieJob: --- 10, [286741]
[2025-10-13 05:16:18] 2025-10-13 05:15:43,707 | INFO     | zombie collector waiting for pid 286741
[2025-10-13 05:16:18] 2025-10-13 05:15:43,707 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:16:18] 2025-10-13 05:15:43,707 | INFO     | collected zombie processes
[2025-10-13 05:16:18] 2025-10-13 05:15:43,707 | INFO     | will attempt to kill all subprocesses of pid=286741
[2025-10-13 05:16:18] 2025-10-13 05:15:43,720 | INFO     | process IDs to be killed: [286741] (in reverse order)
[2025-10-13 05:16:18] 2025-10-13 05:15:43,729 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:16:18] 2025-10-13 05:15:43,729 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:16:18] 2025-10-13 05:15:43,730 | INFO     | did not find any defunct processes belonging to 286741
[2025-10-13 05:16:18] 2025-10-13 05:15:43,730 | INFO     | did not find any defunct processes belonging to 286741
[2025-10-13 05:16:18] 2025-10-13 05:15:43,730 | INFO     | ready for new job
[2025-10-13 05:16:18] 2025-10-13 05:15:43,730 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:16:18] 2025-10-13 05:15:43,731 | INFO     | ***************************************
[2025-10-13 05:16:18] 2025-10-13 05:15:43,731 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:16:18] 2025-10-13 05:15:43,731 | INFO     | ***************************************
[2025-10-13 05:16:18] 2025-10-13 05:15:43,731 | INFO     | 
[2025-10-13 05:16:18] 2025-10-13 05:15:43,731 | INFO     | pilot is running in a VM
[2025-10-13 05:16:18] 2025-10-13 05:15:43,731 | INFO     | architecture information:
[2025-10-13 05:16:18] 2025-10-13 05:15:43,731 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:16:18] 2025-10-13 05:15:43,736 | INFO     | cat /etc/os-release:
[2025-10-13 05:16:18] NAME="CentOS Linux"
[2025-10-13 05:16:18] VERSION="7 (Core)"
[2025-10-13 05:16:18] ID="centos"
[2025-10-13 05:16:18] ID_LIKE="rhel fedora"
[2025-10-13 05:16:18] VERSION_ID="7"
[2025-10-13 05:16:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:16:18] ANSI_COLOR="0;31"
[2025-10-13 05:16:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:16:18] HOME_URL="https://www.centos.org/"
[2025-10-13 05:16:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:16:18] 
[2025-10-13 05:16:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:16:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:16:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:16:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:16:18] 
[2025-10-13 05:16:18] 2025-10-13 05:15:43,736 | INFO     | ***************************************
[2025-10-13 05:16:18] 2025-10-13 05:15:44,239 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/25
[2025-10-13 05:16:18] 2025-10-13 05:15:44,243 | INFO     | sufficient remaining disk space (25379733504 B)
[2025-10-13 05:16:18] 2025-10-13 05:15:44,243 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:16:18] 2025-10-13 05:15:44,243 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:16:18] 2025-10-13 05:15:44,243 | INFO     | update_server=False
[2025-10-13 05:16:18] 2025-10-13 05:15:44,243 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:16:18] 2025-10-13 05:15:44,243 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:16:18] 2025-10-13 05:15:44,598 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:16:18] 2025-10-13 05:15:44,598 | INFO     | aborting loop
[2025-10-13 05:16:18] 2025-10-13 05:15:44,866 | INFO     | all data control threads have been joined
[2025-10-13 05:16:18] 2025-10-13 05:15:44,950 | INFO     | all job control threads have been joined
[2025-10-13 05:16:18] 2025-10-13 05:15:45,248 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:16:18] 2025-10-13 05:15:45,249 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:16:18] 2025-10-13 05:15:45,447 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:16:18] 2025-10-13 05:15:45,604 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:16:18] 2025-10-13 05:15:45,617 | INFO     | all payload control threads have been joined
[2025-10-13 05:16:18] 2025-10-13 05:15:45,714 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:16:18] 2025-10-13 05:15:45,749 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:16:18] 2025-10-13 05:15:45,800 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:16:18] 2025-10-13 05:15:45,872 | INFO     | [data] control thread has finished
[2025-10-13 05:16:18] 2025-10-13 05:15:45,955 | INFO     | [job] control thread has finished
[2025-10-13 05:16:18] 2025-10-13 05:15:46,144 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:16:18] 2025-10-13 05:15:46,214 | INFO     | [job] validate thread has finished
[2025-10-13 05:16:18] 2025-10-13 05:15:46,231 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:16:18] 2025-10-13 05:15:46,367 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:16:18] 2025-10-13 05:15:46,622 | INFO     | [payload] control thread has finished
[2025-10-13 05:16:18] 2025-10-13 05:15:46,734 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:16:18] 2025-10-13 05:15:47,454 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:16:18] 2025-10-13 05:15:49,805 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:16:18] 2025-10-13 05:15:55,293 | INFO     | job.realtimelogging is not enabled
[2025-10-13 05:16:18] 2025-10-13 05:15:56,298 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:16:18] 2025-10-13 05:16:11,786 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:16:18] 2025-10-13 05:16:13,685 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129289953109824)>', '<ExcThread(monitor, started 129289311741696)>']
[2025-10-13 05:16:18] 2025-10-13 05:16:14,441 | INFO     | PID=280095 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 05:16:18] 2025-10-13 05:16:14,442 | INFO     | .. there are 2 such processes running
[2025-10-13 05:16:18] 2025-10-13 05:16:14,442 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:16:18] 2025-10-13 05:16:14,442 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:16:18] 2025-10-13 05:16:14,442 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:16:18] 2025-10-13 05:16:14,442 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:16:18] 2025-10-13 05:16:14,442 | INFO     | [monitor] control thread has ended
[2025-10-13 05:16:18] 2025-10-13 05:16:18,711 | INFO     | all workflow threads have been joined
[2025-10-13 05:16:18] 2025-10-13 05:16:18,711 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:16:18] 2025-10-13 05:16:18,711 | INFO     | traces error code: 0
[2025-10-13 05:16:18] 2025-10-13 05:16:18,711 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:16:18] 2025-10-13 05:16:18,739 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:16:18] 2025-10-13 05:16:18,740 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:16:18] 2025-10-13 05:16:18,741 [wrapper] pilotpid: 280095
[2025-10-13 05:16:18] 2025-10-13 05:16:18,742 [wrapper] Pilot exit status: 0
[2025-10-13 05:16:18] 2025-10-13 05:16:18,748 [wrapper] pandaids: 6840714589
[2025-10-13 05:16:18] 2025-10-13 05:16:18,757 [wrapper] cleanup supervisor_pilot  293751 280096
[2025-10-13 05:16:18] 2025-10-13 05:16:18,758 [wrapper] Test setup, not cleaning
[2025-10-13 05:16:18] 2025-10-13 05:16:18,759 [wrapper] apfmon messages muted
[2025-10-13 05:16:18] 2025-10-13 05:16:18,760 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:16:18] 2025-10-13 05:16:18,761 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:16:18]  *** Error codes and diagnostics ***
[2025-10-13 05:16:18]     "exeErrorCode": 0,
[2025-10-13 05:16:18]     "exeErrorDiag": "",
[2025-10-13 05:16:18]     "pilotErrorCode": 0,
[2025-10-13 05:16:18]     "pilotErrorDiag": "",
[2025-10-13 05:16:18]  *** Listing of results directory ***
[2025-10-13 05:16:18] total 414444
[2025-10-13 05:16:18] -rw-r--r-- 1 boinc boinc    557409 Oct 12 19:50 pilot3.tar.gz
[2025-10-13 05:16:18] -rwx------ 1 boinc boinc     36292 Oct 12 19:54 runpilot2-wrapper.sh
[2025-10-13 05:16:18] -rw-r--r-- 1 boinc boinc      5112 Oct 12 19:54 queuedata.json
[2025-10-13 05:16:18] -rw-r--r-- 1 boinc boinc       100 Oct 13 04:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:16:18] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 04:48 run_atlas
[2025-10-13 05:16:18] -rw-r--r-- 1 boinc boinc       105 Oct 13 04:48 job.xml
[2025-10-13 05:16:18] -rw-r--r-- 2 boinc boinc     15120 Oct 13 04:48 start_atlas.sh
[2025-10-13 05:16:18] drwxrwx--x 2 boinc boinc      4096 Oct 13 04:48 shared
[2025-10-13 05:16:18] -rw-r--r-- 2 boinc boinc    569677 Oct 13 04:48 input.tar.gz
[2025-10-13 05:16:18] -rw-r--r-- 1 boinc boinc      6939 Oct 13 04:48 init_data.xml
[2025-10-13 05:16:18] -rw-r--r-- 2 boinc boinc 219405438 Oct 13 04:48 EVNT.46676267._004474.pool.root.1
[2025-10-13 05:16:18] -rw-r--r-- 1 boinc boinc         0 Oct 13 04:48 boinc_lockfile
[2025-10-13 05:16:18] -rw-r--r-- 1 boinc boinc      2550 Oct 13 04:48 pandaJob.out
[2025-10-13 05:16:18] -rw------- 1 boinc boinc    974365 Oct 13 04:48 agis_schedconf.cvmfs.json
[2025-10-13 05:16:18] -rw------- 1 boinc boinc   1560580 Oct 13 04:48 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:16:18] drwx------ 5 boinc boinc      4096 Oct 13 04:48 pilot3
[2025-10-13 05:16:18] -rw------- 1 boinc boinc 199854759 Oct 13 05:15 HITS.46676269._087985.pool.root.1
[2025-10-13 05:16:18] -rw-r--r-- 1 boinc boinc       529 Oct 13 05:15 boinc_task_state.xml
[2025-10-13 05:16:18] -rw------- 1 boinc boinc      1018 Oct 13 05:15 memory_monitor_summary.json
[2025-10-13 05:16:18] -rw------- 1 boinc boinc    331616 Oct 13 05:15 log.46676269._087985.job.log.tgz.1
[2025-10-13 05:16:18] -rw------- 1 boinc boinc      7733 Oct 13 05:15 heartbeat.json
[2025-10-13 05:16:18] -rw-r--r-- 1 boinc boinc      8192 Oct 13 05:15 boinc_mmap_file
[2025-10-13 05:16:18] -rw-r--r-- 1 boinc boinc        27 Oct 13 05:15 wrapper_checkpoint.txt
[2025-10-13 05:16:18] -rw------- 1 boinc boinc        95 Oct 13 05:16 pilot_heartbeat.json
[2025-10-13 05:16:18] -rw------- 1 boinc boinc      4964 Oct 13 05:16 pilotlog.txt
[2025-10-13 05:16:18] -rw------- 1 boinc boinc    285266 Oct 13 05:16 log.46676269._087985.job.log.1
[2025-10-13 05:16:18] -rw------- 1 boinc boinc       357 Oct 13 05:16 output.list
[2025-10-13 05:16:18] -rw-r--r-- 1 boinc boinc       620 Oct 13 05:16 runtime_log
[2025-10-13 05:16:18] -rw------- 1 boinc boinc    634880 Oct 13 05:16 result.tar.gz
[2025-10-13 05:16:18] -rw------- 1 boinc boinc       639 Oct 13 05:16 XcFNDmwJHS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEMlNDmLEd5Xo.diag
[2025-10-13 05:16:18] -rw-r--r-- 1 boinc boinc      8776 Oct 13 05:16 runtime_log.err
[2025-10-13 05:16:18] -rw-r--r-- 1 boinc boinc     22589 Oct 13 05:16 stderr.txt
[2025-10-13 05:16:18] HITS file was successfully produced:
[2025-10-13 05:16:18] -rw------- 1 boinc boinc 199854759 Oct 13 05:15 shared/HITS.pool.root.1
[2025-10-13 05:16:18]  *** Contents of shared directory: ***
[2025-10-13 05:16:18] total 410640
[2025-10-13 05:16:18] -rw-r--r-- 2 boinc boinc     15120 Oct 13 04:48 start_atlas.sh
[2025-10-13 05:16:18] -rw-r--r-- 2 boinc boinc    569677 Oct 13 04:48 input.tar.gz
[2025-10-13 05:16:18] -rw-r--r-- 2 boinc boinc 219405438 Oct 13 04:48 ATLAS.root_0
[2025-10-13 05:16:18] -rw------- 1 boinc boinc 199854759 Oct 13 05:15 HITS.pool.root.1
[2025-10-13 05:16:18] -rw------- 1 boinc boinc    634880 Oct 13 05:16 result.tar.gz
05:16:20 (276245): run_atlas exited; CPU time 15429.998886
05:16:20 (276245): called boinc_finish(0)

</stderr_txt>
]]>

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