Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:04:32 (1787609): wrapper (7.7.26015): starting
23:04:32 (1787609): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 23:04:32] Arguments: --nthreads 9
[2025-10-12 23:04:32] Threads: 9
[2025-10-12 23:04:32] Checking for CVMFS
[2025-10-12 23:04:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 23:04:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 23:04:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 23:04:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 23:04:33] 2.13.2.0 1395644 130120 452596 151645 2 494 19720332 32935937 21503 16776704 0 169669155 99.566 195855092 28011 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 23:04:33] CVMFS is ok
[2025-10-12 23:04:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 23:04:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 23:04:33] Further information can be found at the LHC@home message board.
[2025-10-12 23:04:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 23:04:33] Checking for apptainer binary...
[2025-10-12 23:04:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 23:04:33] Running /usr/bin/apptainer --version
[2025-10-12 23:04:33] apptainer version 1.4.3-1.el9
[2025-10-12 23:04:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 23:04:33] c6-6-39-2.aglt2.org
[2025-10-12 23:04:33] apptainer works
[2025-10-12 23:04:33] Set ATHENA_PROC_NUMBER=9
[2025-10-12 23:04:33] Set ATHENA_CORE_NUMBER=9
[2025-10-12 23:04:33] Starting ATLAS job with PandaID=6840714512
[2025-10-12 23:04:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:30:50]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:30:50] 2025-10-13 09:30:16,200 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6840714512/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:30:50] 2025-10-13 09:30:16,201 | INFO     | extracted standard info from prmon json
[2025-10-13 05:30:50] 2025-10-13 09:30:16,201 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:30:50] 2025-10-13 09:30:16,201 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:30:50] 2025-10-13 09:30:16,209 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:30:50] 2025-10-13 09:30:16,209 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:30:50] 2025-10-13 09:30:16,215 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:30:50] 2025-10-13 09:30:16,216 | INFO     | sum of square deviations: 16747605077.886309
[2025-10-13 05:30:50] 2025-10-13 09:30:16,223 | INFO     | sum of deviations: 60112058536.32537
[2025-10-13 05:30:50] 2025-10-13 09:30:16,223 | INFO     | mean x: 1760336255.7751322
[2025-10-13 05:30:50] 2025-10-13 09:30:16,223 | INFO     | mean y: 2169188.992063492
[2025-10-13 05:30:50] 2025-10-13 09:30:16,223 | INFO     | -- intersect: -6316193081.831536
[2025-10-13 05:30:50] 2025-10-13 09:30:16,223 | INFO     | intersect: -6316193081.831536
[2025-10-13 05:30:50] 2025-10-13 09:30:16,224 | INFO     | chi2: 1.7475713094495262
[2025-10-13 05:30:50] 2025-10-13 09:30:16,225 | INFO     | sum of square deviations: 16091801245.002728
[2025-10-13 05:30:50] 2025-10-13 09:30:16,228 | INFO     | sum of deviations: 71054391951.43439
[2025-10-13 05:30:50] 2025-10-13 09:30:16,228 | INFO     | mean x: 1760336103.2788203
[2025-10-13 05:30:50] 2025-10-13 09:30:16,228 | INFO     | mean y: 2171730.168900804
[2025-10-13 05:30:50] 2025-10-13 09:30:16,228 | INFO     | -- intersect: -7770706491.744086
[2025-10-13 05:30:50] 2025-10-13 09:30:16,228 | INFO     | intersect: -7770706491.744086
[2025-10-13 05:30:50] 2025-10-13 09:30:16,229 | INFO     | chi2: 1.6942692232154242
[2025-10-13 05:30:50] 2025-10-13 09:30:16,229 | INFO     | current chi2=1.6942692232154242 (change=3.050066451988838 %)
[2025-10-13 05:30:50] 2025-10-13 09:30:16,229 | INFO     | right removable region: 372
[2025-10-13 05:30:50] 2025-10-13 09:30:16,230 | INFO     | sum of square deviations: 16091737805.002731
[2025-10-13 05:30:50] 2025-10-13 09:30:16,233 | INFO     | sum of deviations: 2621262184.075061
[2025-10-13 05:30:50] 2025-10-13 09:30:16,233 | INFO     | mean x: 1760336408.2788203
[2025-10-13 05:30:50] 2025-10-13 09:30:16,233 | INFO     | mean y: 2182499.8069705092
[2025-10-13 05:30:50] 2025-10-13 09:30:16,233 | INFO     | -- intersect: -284567341.2721735
[2025-10-13 05:30:50] 2025-10-13 09:30:16,233 | INFO     | intersect: -284567341.2721735
[2025-10-13 05:30:50] 2025-10-13 09:30:16,234 | INFO     | chi2: 0.23271646324860495
[2025-10-13 05:30:50] 2025-10-13 09:30:16,234 | INFO     | current chi2=0.23271646324860495 (change=86.68343534880364 %)
[2025-10-13 05:30:50] 2025-10-13 09:30:16,234 | INFO     | sum of square deviations: 15453219694.608732
[2025-10-13 05:30:50] 2025-10-13 09:30:16,238 | INFO     | sum of deviations: 7331716913.913059
[2025-10-13 05:30:50] 2025-10-13 09:30:16,238 | INFO     | mean x: 1760336560.7826087
[2025-10-13 05:30:50] 2025-10-13 09:30:16,238 | INFO     | mean y: 2181356.7364130435
[2025-10-13 05:30:50] 2025-10-13 09:30:16,238 | INFO     | -- intersect: -833003128.5635728
[2025-10-13 05:30:50] 2025-10-13 09:30:16,238 | INFO     | intersect: -833003128.5635728
[2025-10-13 05:30:50] 2025-10-13 09:30:16,239 | INFO     | chi2: 0.18622827358177416
[2025-10-13 05:30:50] 2025-10-13 09:30:16,239 | INFO     | current chi2=0.18622827358177416 (change=19.97632183726025 %)
[2025-10-13 05:30:50] 2025-10-13 09:30:16,239 | INFO     | left removable region: 20
[2025-10-13 05:30:50] 2025-10-13 09:30:16,239 | INFO     | sum of square deviations: 13523937495.860794
[2025-10-13 05:30:50] 2025-10-13 09:30:16,242 | INFO     | sum of deviations: 12597551948.451704
[2025-10-13 05:30:50] 2025-10-13 09:30:16,242 | INFO     | mean x: 1760336682.7926137
[2025-10-13 05:30:50] 2025-10-13 09:30:16,242 | INFO     | mean y: 2186245.0198863638
[2025-10-13 05:30:50] 2025-10-13 09:30:16,243 | INFO     | -- intersect: -1637567917.9250681
[2025-10-13 05:30:50] 2025-10-13 09:30:16,243 | INFO     | intersect: -1637567917.9250681
[2025-10-13 05:30:50] 2025-10-13 09:30:16,243 | INFO     | chi2: 0.12417770413038512
[2025-10-13 05:30:50] 2025-10-13 09:30:16,243 | INFO     | -- intersect: -1637567917.9250681
[2025-10-13 05:30:50] 2025-10-13 09:30:16,243 | INFO     | current memory leak: 0.93 B/s (using 352 data points, chi2=0.12)
[2025-10-13 05:30:50] 2025-10-13 09:30:16,244 | INFO     | could have reported an average CPU frequency of 2840 MHz (16 samples)
[2025-10-13 05:30:50] 2025-10-13 09:30:16,244 | INFO     | ..............................
[2025-10-13 05:30:50] 2025-10-13 09:30:16,244 | INFO     | . Timing measurements:
[2025-10-13 05:30:50] 2025-10-13 09:30:16,244 | INFO     | . get job = 0 s
[2025-10-13 05:30:50] 2025-10-13 09:30:16,244 | INFO     | . initial setup = 2 s
[2025-10-13 05:30:50] 2025-10-13 09:30:16,245 | INFO     | . payload setup = 17 s
[2025-10-13 05:30:50] 2025-10-13 09:30:16,245 | INFO     | . stage-in = 0 s
[2025-10-13 05:30:50] 2025-10-13 09:30:16,245 | INFO     | . payload execution = 23057 s
[2025-10-13 05:30:50] 2025-10-13 09:30:16,245 | INFO     | . stage-out = 3 s
[2025-10-13 05:30:50] 2025-10-13 09:30:16,245 | INFO     | . log creation = 0 s
[2025-10-13 05:30:50] 2025-10-13 09:30:16,245 | INFO     | ..............................
[2025-10-13 05:30:50] 2025-10-13 09:30:16,374 | INFO     | 
[2025-10-13 05:30:50] 2025-10-13 09:30:16,375 | INFO     | job summary report
[2025-10-13 05:30:50] 2025-10-13 09:30:16,375 | INFO     | --------------------------------------------------
[2025-10-13 05:30:50] 2025-10-13 09:30:16,375 | INFO     | PanDA job id: 6840714512
[2025-10-13 05:30:50] 2025-10-13 09:30:16,375 | INFO     | task id: 46676269
[2025-10-13 05:30:50] 2025-10-13 09:30:16,375 | INFO     | errors: (none)
[2025-10-13 05:30:50] 2025-10-13 09:30:16,375 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:30:50] 2025-10-13 09:30:16,375 | INFO     | pilot state: finished 
[2025-10-13 05:30:50] 2025-10-13 09:30:16,375 | INFO     | transexitcode: 0
[2025-10-13 05:30:50] 2025-10-13 09:30:16,375 | INFO     | exeerrorcode: 0
[2025-10-13 05:30:50] 2025-10-13 09:30:16,375 | INFO     | exeerrordiag: 
[2025-10-13 05:30:50] 2025-10-13 09:30:16,375 | INFO     | exitcode: 0
[2025-10-13 05:30:50] 2025-10-13 09:30:16,375 | INFO     | exitmsg: OK
[2025-10-13 05:30:50] 2025-10-13 09:30:16,376 | INFO     | cpuconsumptiontime: 48060 s
[2025-10-13 05:30:50] 2025-10-13 09:30:16,376 | INFO     | nevents: 400
[2025-10-13 05:30:50] 2025-10-13 09:30:16,376 | INFO     | neventsw: 0
[2025-10-13 05:30:50] 2025-10-13 09:30:16,376 | INFO     | pid: 1801767
[2025-10-13 05:30:50] 2025-10-13 09:30:16,376 | INFO     | pgrp: 1801767
[2025-10-13 05:30:50] 2025-10-13 09:30:16,376 | INFO     | corecount: 9
[2025-10-13 05:30:50] 2025-10-13 09:30:16,376 | INFO     | event service: False
[2025-10-13 05:30:50] 2025-10-13 09:30:16,376 | INFO     | sizes: {0: 2348855, 1: 2348855, 10: 2349145, 12: 2349173, 23078: 2383831, 23081: 2392829, 23084: 2393013, 23092: 2393207}
[2025-10-13 05:30:50] 2025-10-13 09:30:16,376 | INFO     | --------------------------------------------------
[2025-10-13 05:30:50] 2025-10-13 09:30:16,376 | INFO     | 
[2025-10-13 05:30:50] 2025-10-13 09:30:16,376 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 05:30:50] 2025-10-13 09:30:16,410 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,410 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,410 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,410 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,410 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,410 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,410 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,410 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,410 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,411 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,411 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,411 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,411 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,411 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,411 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,411 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,411 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,411 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:30:50] 2025-10-13 09:30:16,411 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,411 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:30:50] 2025-10-13 09:30:16,411 | INFO     | job 6840714512 has completed (purged errors)
[2025-10-13 05:30:50] 2025-10-13 09:30:16,412 | INFO     | overall cleanup function is called
[2025-10-13 05:30:50] 2025-10-13 09:30:16,824 | INFO     | PID=1793806 has CPU usage=10.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 05:30:50] 2025-10-13 09:30:16,824 | INFO     | .. there are 27 such processes running
[2025-10-13 05:30:50] 2025-10-13 09:30:17,420 | INFO     | --- collectZombieJob: --- 10, [1801767]
[2025-10-13 05:30:50] 2025-10-13 09:30:17,421 | INFO     | zombie collector waiting for pid 1801767
[2025-10-13 05:30:50] 2025-10-13 09:30:17,421 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:30:50] 2025-10-13 09:30:17,421 | INFO     | collected zombie processes
[2025-10-13 05:30:50] 2025-10-13 09:30:17,421 | INFO     | will attempt to kill all subprocesses of pid=1801767
[2025-10-13 05:30:50] 2025-10-13 09:30:17,959 | INFO     | process IDs to be killed: [1801767] (in reverse order)
[2025-10-13 05:30:50] 2025-10-13 09:30:18,105 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:30:50] 2025-10-13 09:30:18,106 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:30:50] 2025-10-13 09:30:18,178 | INFO     | did not find any defunct processes belonging to 1801767
[2025-10-13 05:30:50] 2025-10-13 09:30:18,225 | INFO     | did not find any defunct processes belonging to 1801767
[2025-10-13 05:30:50] 2025-10-13 09:30:18,225 | INFO     | ready for new job
[2025-10-13 05:30:50] 2025-10-13 09:30:18,225 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:30:50] 2025-10-13 09:30:18,228 | INFO     | ***************************************
[2025-10-13 05:30:50] 2025-10-13 09:30:18,229 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:30:50] 2025-10-13 09:30:18,229 | INFO     | ***************************************
[2025-10-13 05:30:50] 2025-10-13 09:30:18,229 | INFO     | 
[2025-10-13 05:30:50] 2025-10-13 09:30:18,261 | INFO     | architecture information:
[2025-10-13 05:30:50] 2025-10-13 09:30:18,268 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:30:50] 2025-10-13 09:30:18,400 | INFO     | cat /etc/os-release:
[2025-10-13 05:30:50] NAME="CentOS Linux"
[2025-10-13 05:30:50] VERSION="7 (Core)"
[2025-10-13 05:30:50] ID="centos"
[2025-10-13 05:30:50] ID_LIKE="rhel fedora"
[2025-10-13 05:30:50] VERSION_ID="7"
[2025-10-13 05:30:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:30:50] ANSI_COLOR="0;31"
[2025-10-13 05:30:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:30:50] HOME_URL="https://www.centos.org/"
[2025-10-13 05:30:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:30:50] 
[2025-10-13 05:30:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:30:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:30:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:30:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:30:50] 
[2025-10-13 05:30:50] 2025-10-13 09:30:18,400 | INFO     | ***************************************
[2025-10-13 05:30:50] 2025-10-13 09:30:18,904 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 05:30:50] 2025-10-13 09:30:18,955 | INFO     | sufficient remaining disk space (72439824384 B)
[2025-10-13 05:30:50] 2025-10-13 09:30:18,955 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:30:50] 2025-10-13 09:30:18,955 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:30:50] 2025-10-13 09:30:18,955 | INFO     | update_server=False
[2025-10-13 05:30:50] 2025-10-13 09:30:18,955 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:30:50] 2025-10-13 09:30:18,956 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:30:50] 2025-10-13 09:30:18,956 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:30:50] 2025-10-13 09:30:19,193 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 05:30:50] 2025-10-13 09:30:19,194 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 05:30:50] 2025-10-13 09:30:19,194 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:30:50] 2025-10-13 09:30:19,194 | INFO     | will abort loop
[2025-10-13 05:30:50] 2025-10-13 09:30:19,342 | INFO     | all payload control threads have been joined
[2025-10-13 05:30:50] 2025-10-13 09:30:19,434 | INFO     | all job control threads have been joined
[2025-10-13 05:30:50] 2025-10-13 09:30:19,581 | INFO     | all data control threads have been joined
[2025-10-13 05:30:50] 2025-10-13 09:30:19,964 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:30:50] 2025-10-13 09:30:20,031 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:30:50] 2025-10-13 09:30:20,200 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:30:50] 2025-10-13 09:30:20,259 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:30:50] 2025-10-13 09:30:20,347 | INFO     | [payload] control thread has finished
[2025-10-13 05:30:50] 2025-10-13 09:30:20,440 | INFO     | [job] control thread has finished
[2025-10-13 05:30:50] 2025-10-13 09:30:20,587 | INFO     | [data] control thread has finished
[2025-10-13 05:30:50] 2025-10-13 09:30:20,678 | INFO     | [job] validate thread has finished
[2025-10-13 05:30:50] 2025-10-13 09:30:20,755 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:30:50] 2025-10-13 09:30:20,937 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:30:50] 2025-10-13 09:30:20,963 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:30:50] 2025-10-13 09:30:21,243 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:30:50] 2025-10-13 09:30:21,256 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:30:50] 2025-10-13 09:30:21,400 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:30:50] 2025-10-13 09:30:22,406 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:30:50] 2025-10-13 09:30:22,972 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:30:50] 2025-10-13 09:30:29,362 | INFO     | job.realtimelogging is not enabled
[2025-10-13 05:30:50] 2025-10-13 09:30:30,368 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:30:50] 2025-10-13 09:30:43,091 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:30:50] 2025-10-13 09:30:43,783 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140372175869760)>', '<ExcThread(monitor, started 140371510146816)>']
[2025-10-13 05:30:50] 2025-10-13 09:30:48,809 | INFO     | all workflow threads have been joined
[2025-10-13 05:30:50] 2025-10-13 09:30:48,810 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:30:50] 2025-10-13 09:30:48,810 | INFO     | traces error code: 0
[2025-10-13 05:30:50] 2025-10-13 09:30:48,810 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:30:50] 2025-10-13 09:30:49,500 | INFO     | PID=1793806 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:30:50] 2025-10-13 09:30:49,501 | INFO     | .. there are 27 such processes running
[2025-10-13 05:30:50] 2025-10-13 09:30:49,502 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:30:50] 2025-10-13 09:30:49,502 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:30:50] 2025-10-13 09:30:49,502 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:30:50] 2025-10-13 09:30:49,502 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:30:50] 2025-10-13 09:30:49,502 | INFO     | [monitor] control thread has ended
[2025-10-13 05:30:50] 2025-10-13 09:30:49,706 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:30:50] 2025-10-13 09:30:49,710 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:30:50] 2025-10-13 09:30:49,713 [wrapper] pilotpid: 1793806
[2025-10-13 05:30:50] 2025-10-13 09:30:49,721 [wrapper] Pilot exit status: 0
[2025-10-13 05:30:50] 2025-10-13 09:30:49,735 [wrapper] pandaids: 6840714512
[2025-10-13 05:30:50] 2025-10-13 09:30:49,806 [wrapper] cleanup supervisor_pilot 3020212 1793807
[2025-10-13 05:30:50] 2025-10-13 09:30:49,811 [wrapper] Test setup, not cleaning
[2025-10-13 05:30:50] 2025-10-13 09:30:49,814 [wrapper] apfmon messages muted
[2025-10-13 05:30:50] 2025-10-13 09:30:49,817 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:30:50] 2025-10-13 09:30:49,820 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:30:50]  *** Error codes and diagnostics ***
[2025-10-13 05:30:50]     "exeErrorCode": 0,
[2025-10-13 05:30:50]     "exeErrorDiag": "",
[2025-10-13 05:30:50]     "pilotErrorCode": 0,
[2025-10-13 05:30:50]     "pilotErrorDiag": "",
[2025-10-13 05:30:50]  *** Listing of results directory ***
[2025-10-13 05:30:50] total 411748
[2025-10-13 05:30:50] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 15:50 pilot3.tar.gz
[2025-10-13 05:30:50] -rwx------. 1 boincer umatlas     36292 Oct 12 15:50 runpilot2-wrapper.sh
[2025-10-13 05:30:50] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 15:51 queuedata.json
[2025-10-13 05:30:50] -rw-r--r--. 1 boincer umatlas       100 Oct 12 23:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:30:50] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 23:04 run_atlas
[2025-10-13 05:30:50] -rw-r--r--. 1 boincer umatlas       105 Oct 12 23:04 job.xml
[2025-10-13 05:30:50] -rw-r--r--. 2 boincer umatlas 220206965 Oct 12 23:04 EVNT.46676267._004471.pool.root.1
[2025-10-13 05:30:50] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 23:04 start_atlas.sh
[2025-10-13 05:30:50] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 23:04 shared
[2025-10-13 05:30:50] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 23:04 input.tar.gz
[2025-10-13 05:30:50] -rw-r--r--. 1 boincer umatlas         0 Oct 12 23:04 boinc_lockfile
[2025-10-13 05:30:50] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 23:04 pandaJob.out
[2025-10-13 05:30:50] -rw-------. 1 boincer umatlas    974373 Oct 12 23:04 agis_schedconf.cvmfs.json
[2025-10-13 05:30:50] drwx------. 5 boincer umatlas      4096 Oct 12 23:05 pilot3
[2025-10-13 05:30:50] -rw-r--r--. 1 boincer umatlas      6841 Oct 13 05:28 init_data.xml
[2025-10-13 05:30:50] -rw-------. 1 boincer umatlas 190476714 Oct 13 05:29 HITS.46676269._087908.pool.root.1
[2025-10-13 05:30:50] -rw-r--r--. 1 boincer umatlas       530 Oct 13 05:29 boinc_task_state.xml
[2025-10-13 05:30:50] -rw-------. 1 boincer umatlas      1041 Oct 13 05:29 memory_monitor_summary.json
[2025-10-13 05:30:50] -rw-------. 1 boincer umatlas   1560580 Oct 13 05:30 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:30:50] -rw-------. 1 boincer umatlas    575087 Oct 13 05:30 log.46676269._087908.job.log.tgz.1
[2025-10-13 05:30:50] -rw-------. 1 boincer umatlas      7821 Oct 13 05:30 heartbeat.json
[2025-10-13 05:30:50] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 05:30 boinc_mmap_file
[2025-10-13 05:30:50] -rw-r--r--. 1 boincer umatlas        28 Oct 13 05:30 wrapper_checkpoint.txt
[2025-10-13 05:30:50] -rw-------. 1 boincer umatlas        95 Oct 13 05:30 pilot_heartbeat.json
[2025-10-13 05:30:50] -rw-------. 1 boincer umatlas       823 Oct 13 05:30 pilotlog.txt
[2025-10-13 05:30:50] -rw-------. 1 boincer umatlas   2947587 Oct 13 05:30 log.46676269._087908.job.log.1
[2025-10-13 05:30:50] -rw-------. 1 boincer umatlas       357 Oct 13 05:30 output.list
[2025-10-13 05:30:50] -rw-r--r--. 1 boincer umatlas       620 Oct 13 05:30 runtime_log
[2025-10-13 05:30:50] -rw-------. 1 boincer umatlas   3543040 Oct 13 05:30 result.tar.gz
[2025-10-13 05:30:50] -rw-r--r--. 1 boincer umatlas      8709 Oct 13 05:30 runtime_log.err
[2025-10-13 05:30:50] -rw-------. 1 boincer umatlas       657 Oct 13 05:30 EJ6LDmqGHS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmnrUMDmQpQSvm.diag
[2025-10-13 05:30:50] -rw-r--r--. 1 boincer umatlas     21258 Oct 13 05:30 stderr.txt
[2025-10-13 05:30:50] HITS file was successfully produced:
[2025-10-13 05:30:50] -rw-------. 1 boincer umatlas 190476714 Oct 13 05:29 shared/HITS.pool.root.1
[2025-10-13 05:30:50]  *** Contents of shared directory: ***
[2025-10-13 05:30:50] total 405108
[2025-10-13 05:30:50] -rw-r--r--. 2 boincer umatlas 220206965 Oct 12 23:04 ATLAS.root_0
[2025-10-13 05:30:50] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 23:04 start_atlas.sh
[2025-10-13 05:30:50] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 23:04 input.tar.gz
[2025-10-13 05:30:50] -rw-------. 1 boincer umatlas 190476714 Oct 13 05:29 HITS.pool.root.1
[2025-10-13 05:30:50] -rw-------. 1 boincer umatlas   3543040 Oct 13 05:30 result.tar.gz
05:30:52 (1787609): run_atlas exited; CPU time 48832.811144
05:30:52 (1787609): called boinc_finish(0)

</stderr_txt>
]]>

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