Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:25:55 (349646): wrapper (7.7.26015): starting
20:25:55 (349646): wrapper: running run_atlas (--nthreads 11)
[2025-10-12 20:25:55] Arguments: --nthreads 11
[2025-10-12 20:25:55] Threads: 11
[2025-10-12 20:25:55] Checking for CVMFS
[2025-10-12 20:25:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:25:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:25:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:25:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:25:55] 2.13.2.0 2216807 129960 423228 151642 0 57 35722413 40960001 1114 16776704 30 268102538 99.727 199490223 21781 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 20:25:55] CVMFS is ok
[2025-10-12 20:25:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:25:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:25:55] Further information can be found at the LHC@home message board.
[2025-10-12 20:25:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:25:55] Checking for apptainer binary...
[2025-10-12 20:25:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:25:55] Running /usr/bin/apptainer --version
[2025-10-12 20:25:55] apptainer version 1.4.3-1.el9
[2025-10-12 20:25:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:25:55] c7-11-11.aglt2.org
[2025-10-12 20:25:55] apptainer works
[2025-10-12 20:25:55] Set ATHENA_PROC_NUMBER=11
[2025-10-12 20:25:55] Set ATHENA_CORE_NUMBER=11
[2025-10-12 20:25:55] Starting ATLAS job with PandaID=6840714631
[2025-10-12 20:25:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:03:11]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:03:11]  replicas=None
[2025-10-12 21:03:11]  scope=mc23_13p6TeV
[2025-10-12 21:03:11]  status=None
[2025-10-12 21:03:11]  status_code=0
[2025-10-12 21:03:11]  storage_token=
[2025-10-12 21:03:11]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6840714631/log.46676269._088027.job.log.tgz.1
[2025-10-12 21:03:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/45/log.46676269._088027.job.log.tgz.1
[2025-10-12 21:03:11]  workdir=None
[2025-10-12 21:03:11] ]
[2025-10-12 21:03:11] 2025-10-13 01:02:07,790 | INFO     | transferring file log.46676269._088027.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6840714631/log.46676269._088027.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 21:03:11] 2025-10-13 01:02:07,790 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6840714631/log.46676269._088027.job.log.tgz.1 /tmp/boinchome/slots/4/log.46676269._088027.job
[2025-10-12 21:03:11] 2025-10-13 01:02:07,805 | INFO     | adding to output.list: log.46676269._088027.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/45/log.46676269._088027.job.log.tg
[2025-10-12 21:03:11] 2025-10-13 01:02:07,806 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 21:03:11] 2025-10-13 01:02:07,806 | INFO     | summary of transferred files:
[2025-10-12 21:03:11] 2025-10-13 01:02:07,806 | INFO     |  -- lfn=log.46676269._088027.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 21:03:11] 2025-10-13 01:02:07,806 | INFO     | stage-out finished correctly
[2025-10-12 21:03:11] 2025-10-13 01:02:07,857 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 21:03:11] 2025-10-13 01:02:08,796 | INFO     | time since job start (2165s) is within the limit (172800.0s)
[2025-10-12 21:03:11] 2025-10-13 01:02:09,041 | INFO     | job 6840714631 has state=finished
[2025-10-12 21:03:11] 2025-10-13 01:02:09,041 | INFO     | preparing for final server update for job 6840714631 in state='finished'
[2025-10-12 21:03:11] 2025-10-13 01:02:09,079 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 21:03:11] 2025-10-13 01:02:09,080 | INFO     | this job has now completed (state=finished)
[2025-10-12 21:03:11] 2025-10-13 01:02:09,080 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 21:03:11] 2025-10-13 01:02:09,080 | INFO     | log transfer has been attempted: DONE
[2025-10-12 21:03:11] 2025-10-13 01:02:09,080 | INFO     | job 6840714631 has finished - writing final server update
[2025-10-12 21:03:11] 2025-10-13 01:02:09,080 | INFO     | total number of processed events: 400 (read)
[2025-10-12 21:03:11] 2025-10-13 01:02:09,080 | INFO     | executing command: lscpu
[2025-10-12 21:03:11] 2025-10-13 01:02:09,115 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 21:03:11] 2025-10-13 01:02:10,804 | INFO     | time since job start (2167s) is within the limit (172800.0s)
[2025-10-12 21:03:11] 2025-10-13 01:02:10,985 | WARNING  | process 369139 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 21:03:11] 2025-10-13 01:02:10,985 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6840714631/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:03:11] 2025-10-13 01:02:11,157 | INFO     | number of running child processes to parent process 369139: 1
[2025-10-12 21:03:11] 2025-10-13 01:02:11,158 | INFO     | maximum number of monitored processes: 6
[2025-10-12 21:03:11] 2025-10-13 01:02:12,046 | INFO     | PID=355339 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 21:03:11] 2025-10-13 01:02:12,046 | INFO     | .. there are 5 such processes running
[2025-10-12 21:03:11] 2025-10-13 01:02:12,078 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 21:03:11] 2025-10-13 01:02:12,099 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3063.609609374999
[2025-10-12 21:03:11] 2025-10-13 01:02:12,106 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6840714631/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:03:11] 2025-10-13 01:02:12,106 | INFO     | extracted standard info from prmon json
[2025-10-12 21:03:11] 2025-10-13 01:02:12,106 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:03:11] 2025-10-13 01:02:12,106 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:03:11] 2025-10-13 01:02:12,106 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:03:11] 2025-10-13 01:02:12,106 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:03:11] 2025-10-13 01:02:12,107 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:03:11] 2025-10-13 01:02:12,107 | INFO     | sum of square deviations: 7553630.0
[2025-10-12 21:03:11] 2025-10-13 01:02:12,107 | INFO     | sum of deviations: -129651412.99999997
[2025-10-12 21:03:11] 2025-10-13 01:02:12,107 | INFO     | mean x: 1760316345.0
[2025-10-12 21:03:11] 2025-10-13 01:02:12,107 | INFO     | mean y: 2528980.620689655
[2025-10-12 21:03:11] 2025-10-13 01:02:12,107 | INFO     | -- intersect: 30216810254.16009
[2025-10-12 21:03:11] 2025-10-13 01:02:12,107 | INFO     | intersect: 30216810254.16009
[2025-10-12 21:03:11] 2025-10-13 01:02:12,108 | INFO     | chi2: 0.0038406340683396134
[2025-10-12 21:03:11] 2025-10-13 01:02:12,108 | INFO     | -- intersect: 30216810254.16009
[2025-10-12 21:03:11] 2025-10-13 01:02:12,108 | INFO     | current memory leak: -17.16 B/s (using 29 data points, chi2=0.00)
[2025-10-12 21:03:11] 2025-10-13 01:02:12,108 | INFO     | could have reported an average CPU frequency of 3086 MHz (5 samples)
[2025-10-12 21:03:11] 2025-10-13 01:02:12,108 | INFO     | ..............................
[2025-10-12 21:03:11] 2025-10-13 01:02:12,108 | INFO     | . Timing measurements:
[2025-10-12 21:03:11] 2025-10-13 01:02:12,108 | INFO     | . get job = 0 s
[2025-10-12 21:03:11] 2025-10-13 01:02:12,108 | INFO     | . initial setup = 2 s
[2025-10-12 21:03:11] 2025-10-13 01:02:12,108 | INFO     | . payload setup = 4 s
[2025-10-12 21:03:11] 2025-10-13 01:02:12,108 | INFO     | . stage-in = 0 s
[2025-10-12 21:03:11] 2025-10-13 01:02:12,108 | INFO     | . payload execution = 2141 s
[2025-10-12 21:03:11] 2025-10-13 01:02:12,108 | INFO     | . stage-out = 0 s
[2025-10-12 21:03:11] 2025-10-13 01:02:12,108 | INFO     | . log creation = 0 s
[2025-10-12 21:03:11] 2025-10-13 01:02:12,108 | INFO     | ..............................
[2025-10-12 21:03:11] 2025-10-13 01:02:12,161 | INFO     | 
[2025-10-12 21:03:11] 2025-10-13 01:02:12,161 | INFO     | job summary report
[2025-10-12 21:03:11] 2025-10-13 01:02:12,161 | INFO     | --------------------------------------------------
[2025-10-12 21:03:11] 2025-10-13 01:02:12,161 | INFO     | PanDA job id: 6840714631
[2025-10-12 21:03:11] 2025-10-13 01:02:12,161 | INFO     | task id: 46676269
[2025-10-12 21:03:11] 2025-10-13 01:02:12,161 | INFO     | errors: (none)
[2025-10-12 21:03:11] 2025-10-13 01:02:12,161 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:03:11] 2025-10-13 01:02:12,161 | INFO     | pilot state: finished 
[2025-10-12 21:03:11] 2025-10-13 01:02:12,161 | INFO     | transexitcode: 0
[2025-10-12 21:03:11] 2025-10-13 01:02:12,161 | INFO     | exeerrorcode: 0
[2025-10-12 21:03:11] 2025-10-13 01:02:12,161 | INFO     | exeerrordiag: 
[2025-10-12 21:03:11] 2025-10-13 01:02:12,162 | INFO     | exitcode: 0
[2025-10-12 21:03:11] 2025-10-13 01:02:12,162 | INFO     | exitmsg: OK
[2025-10-12 21:03:11] 2025-10-13 01:02:12,162 | INFO     | cpuconsumptiontime: 20668 s
[2025-10-12 21:03:11] 2025-10-13 01:02:12,162 | INFO     | nevents: 400
[2025-10-12 21:03:11] 2025-10-13 01:02:12,162 | INFO     | neventsw: 0
[2025-10-12 21:03:11] 2025-10-13 01:02:12,162 | INFO     | pid: 369139
[2025-10-12 21:03:11] 2025-10-13 01:02:12,162 | INFO     | pgrp: 369139
[2025-10-12 21:03:11] 2025-10-13 01:02:12,162 | INFO     | corecount: 11
[2025-10-12 21:03:11] 2025-10-13 01:02:12,162 | INFO     | event service: False
[2025-10-12 21:03:11] 2025-10-13 01:02:12,162 | INFO     | sizes: {0: 2348857, 3: 2349119, 11: 2349147, 2149: 2374271, 2150: 2383325, 2154: 2383495}
[2025-10-12 21:03:11] 2025-10-13 01:02:12,162 | INFO     | --------------------------------------------------
[2025-10-12 21:03:11] 2025-10-13 01:02:12,162 | INFO     | 
[2025-10-12 21:03:11] 2025-10-13 01:02:12,162 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-12 21:03:11] 2025-10-13 01:02:12,177 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,177 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,177 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,177 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,177 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,177 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,177 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,177 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,177 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,177 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,178 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,178 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,178 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,178 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,178 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,178 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,178 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,178 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:03:11] 2025-10-13 01:02:12,178 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,178 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:03:11] 2025-10-13 01:02:12,178 | INFO     | job 6840714631 has completed (purged errors)
[2025-10-12 21:03:11] 2025-10-13 01:02:12,178 | INFO     | overall cleanup function is called
[2025-10-12 21:03:11] 2025-10-13 01:02:13,185 | INFO     | --- collectZombieJob: --- 10, [369139]
[2025-10-12 21:03:11] 2025-10-13 01:02:13,185 | INFO     | zombie collector waiting for pid 369139
[2025-10-12 21:03:11] 2025-10-13 01:02:13,186 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:03:11] 2025-10-13 01:02:13,186 | INFO     | collected zombie processes
[2025-10-12 21:03:11] 2025-10-13 01:02:13,186 | INFO     | will attempt to kill all subprocesses of pid=369139
[2025-10-12 21:03:11] 2025-10-13 01:02:13,378 | INFO     | process IDs to be killed: [369139] (in reverse order)
[2025-10-12 21:03:11] 2025-10-13 01:02:13,447 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:03:11] 2025-10-13 01:02:13,447 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:03:11] 2025-10-13 01:02:13,455 | INFO     | did not find any defunct processes belonging to 369139
[2025-10-12 21:03:11] 2025-10-13 01:02:13,460 | INFO     | did not find any defunct processes belonging to 369139
[2025-10-12 21:03:11] 2025-10-13 01:02:13,461 | INFO     | ready for new job
[2025-10-12 21:03:11] 2025-10-13 01:02:13,461 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:03:11] 2025-10-13 01:02:13,462 | INFO     | ***************************************
[2025-10-12 21:03:11] 2025-10-13 01:02:13,462 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:03:11] 2025-10-13 01:02:13,462 | INFO     | ***************************************
[2025-10-12 21:03:11] 2025-10-13 01:02:13,462 | INFO     | 
[2025-10-12 21:03:11] 2025-10-13 01:02:13,477 | INFO     | architecture information:
[2025-10-12 21:03:11] 2025-10-13 01:02:13,477 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:03:11] 2025-10-13 01:02:13,494 | INFO     | cat /etc/os-release:
[2025-10-12 21:03:11] NAME="CentOS Linux"
[2025-10-12 21:03:11] VERSION="7 (Core)"
[2025-10-12 21:03:11] ID="centos"
[2025-10-12 21:03:11] ID_LIKE="rhel fedora"
[2025-10-12 21:03:11] VERSION_ID="7"
[2025-10-12 21:03:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:03:11] ANSI_COLOR="0;31"
[2025-10-12 21:03:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:03:11] HOME_URL="https://www.centos.org/"
[2025-10-12 21:03:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:03:11] 
[2025-10-12 21:03:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:03:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:03:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:03:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:03:11] 
[2025-10-12 21:03:11] 2025-10-13 01:02:13,494 | INFO     | ***************************************
[2025-10-12 21:03:11] 2025-10-13 01:02:13,997 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-12 21:03:11] 2025-10-13 01:02:14,010 | INFO     | sufficient remaining disk space (83710967808 B)
[2025-10-12 21:03:11] 2025-10-13 01:02:14,010 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:03:11] 2025-10-13 01:02:14,010 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:03:11] 2025-10-13 01:02:14,011 | INFO     | update_server=False
[2025-10-12 21:03:11] 2025-10-13 01:02:14,011 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:03:11] 2025-10-13 01:02:14,011 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:03:11] 2025-10-13 01:02:14,011 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:03:11] 2025-10-13 01:02:14,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:03:11] 2025-10-13 01:02:14,668 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:03:11] 2025-10-13 01:02:14,669 | INFO     | aborting loop
[2025-10-12 21:03:11] 2025-10-13 01:02:14,675 | INFO     | all data control threads have been joined
[2025-10-12 21:03:11] 2025-10-13 01:02:14,709 | INFO     | all job control threads have been joined
[2025-10-12 21:03:11] 2025-10-13 01:02:14,787 | INFO     | all payload control threads have been joined
[2025-10-12 21:03:11] 2025-10-13 01:02:15,016 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:03:11] 2025-10-13 01:02:15,017 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:03:11] 2025-10-13 01:02:15,029 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:03:11] 2025-10-13 01:02:15,099 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:03:11] 2025-10-13 01:02:15,195 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:03:11] 2025-10-13 01:02:15,651 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:03:11] 2025-10-13 01:02:15,671 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:03:11] 2025-10-13 01:02:15,681 | INFO     | [data] control thread has finished
[2025-10-12 21:03:11] 2025-10-13 01:02:15,715 | INFO     | [job] control thread has finished
[2025-10-12 21:03:11] 2025-10-13 01:02:15,792 | INFO     | [payload] control thread has finished
[2025-10-12 21:03:11] 2025-10-13 01:02:16,017 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:03:11] 2025-10-13 01:02:16,182 | INFO     | [job] validate thread has finished
[2025-10-12 21:03:11] 2025-10-13 01:02:16,207 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:03:11] 2025-10-13 01:02:16,522 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:03:11] 2025-10-13 01:02:18,017 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:03:11] 2025-10-13 01:02:24,120 | INFO     | job.realtimelogging is not enabled
[2025-10-12 21:03:11] 2025-10-13 01:02:25,126 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:03:11] 2025-10-13 01:02:44,347 | INFO     | PID=355339 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 21:03:11] 2025-10-13 01:02:44,347 | INFO     | .. there are 5 such processes running
[2025-10-12 21:03:11] 2025-10-13 01:02:44,348 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:03:11] 2025-10-13 01:02:44,348 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:03:11] 2025-10-13 01:02:44,348 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:03:11] 2025-10-13 01:03:06,553 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:03:11] 2025-10-13 01:03:06,764 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139995034163008)>', '<ExcThread(monitor, started 139994677090048)>']
[2025-10-12 21:03:11] 2025-10-13 01:03:07,456 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:03:11] 2025-10-13 01:03:07,457 | INFO     | [monitor] control thread has ended
[2025-10-12 21:03:11] 2025-10-13 01:03:11,789 | INFO     | all workflow threads have been joined
[2025-10-12 21:03:11] 2025-10-13 01:03:11,789 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:03:11] 2025-10-13 01:03:11,790 | INFO     | traces error code: 0
[2025-10-12 21:03:11] 2025-10-13 01:03:11,790 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:03:11] 2025-10-13 01:03:11,862 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:03:11] 2025-10-13 01:03:11,864 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:03:11] 2025-10-13 01:03:11,866 [wrapper] pilotpid: 355339
[2025-10-12 21:03:11] 2025-10-13 01:03:11,868 [wrapper] Pilot exit status: 0
[2025-10-12 21:03:11] 2025-10-13 01:03:11,877 [wrapper] pandaids: 6840714631
[2025-10-12 21:03:11] 2025-10-13 01:03:11,929 [wrapper] cleanup supervisor_pilot  448615 355341
[2025-10-12 21:03:11] 2025-10-13 01:03:11,931 [wrapper] Test setup, not cleaning
[2025-10-12 21:03:11] 2025-10-13 01:03:11,934 [wrapper] apfmon messages muted
[2025-10-12 21:03:11] 2025-10-13 01:03:11,936 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:03:11] 2025-10-13 01:03:11,938 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:03:11]  *** Error codes and diagnostics ***
[2025-10-12 21:03:11]     "exeErrorCode": 0,
[2025-10-12 21:03:11]     "exeErrorDiag": "",
[2025-10-12 21:03:11]     "pilotErrorCode": 0,
[2025-10-12 21:03:11]     "pilotErrorDiag": "",
[2025-10-12 21:03:11]  *** Listing of results directory ***
[2025-10-12 21:03:11] total 414284
[2025-10-12 21:03:11] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 15:50 pilot3.tar.gz
[2025-10-12 21:03:11] -rwx------. 1 boincer umatlas     36292 Oct 12 15:55 runpilot2-wrapper.sh
[2025-10-12 21:03:11] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 15:55 queuedata.json
[2025-10-12 21:03:11] -rw-r--r--. 1 boincer umatlas       100 Oct 12 20:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:03:11] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 20:25 run_atlas
[2025-10-12 21:03:11] -rw-r--r--. 1 boincer umatlas       105 Oct 12 20:25 job.xml
[2025-10-12 21:03:11] -rw-r--r--. 2 boincer umatlas 220080545 Oct 12 20:25 EVNT.46676267._004475.pool.root.1
[2025-10-12 21:03:11] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 20:25 start_atlas.sh
[2025-10-12 21:03:11] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 20:25 shared
[2025-10-12 21:03:11] -rw-r--r--. 2 boincer umatlas    569677 Oct 12 20:25 input.tar.gz
[2025-10-12 21:03:11] -rw-r--r--. 1 boincer umatlas         0 Oct 12 20:25 boinc_lockfile
[2025-10-12 21:03:11] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 20:25 pandaJob.out
[2025-10-12 21:03:11] -rw-------. 1 boincer umatlas    975603 Oct 12 20:26 agis_schedconf.cvmfs.json
[2025-10-12 21:03:11] -rw-------. 1 boincer umatlas   1560580 Oct 12 20:26 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:03:11] drwx------. 5 boincer umatlas      4096 Oct 12 20:26 pilot3
[2025-10-12 21:03:11] -rw-r--r--. 1 boincer umatlas      6900 Oct 12 20:57 init_data.xml
[2025-10-12 21:03:11] -rw-------. 1 boincer umatlas 198844386 Oct 12 21:01 HITS.46676269._088027.pool.root.1
[2025-10-12 21:03:11] -rw-r--r--. 1 boincer umatlas       529 Oct 12 21:01 boinc_task_state.xml
[2025-10-12 21:03:11] -rw-------. 1 boincer umatlas      1021 Oct 12 21:02 memory_monitor_summary.json
[2025-10-12 21:03:11] -rw-------. 1 boincer umatlas    348839 Oct 12 21:02 log.46676269._088027.job.log.tgz.1
[2025-10-12 21:03:11] -rw-------. 1 boincer umatlas      7768 Oct 12 21:02 heartbeat.json
[2025-10-12 21:03:11] -rw-------. 1 boincer umatlas        95 Oct 12 21:02 pilot_heartbeat.json
[2025-10-12 21:03:11] -rw-r--r--. 1 boincer umatlas        27 Oct 12 21:03 wrapper_checkpoint.txt
[2025-10-12 21:03:11] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 21:03 boinc_mmap_file
[2025-10-12 21:03:11] -rw-------. 1 boincer umatlas      4894 Oct 12 21:03 pilotlog.txt
[2025-10-12 21:03:11] -rw-------. 1 boincer umatlas    349623 Oct 12 21:03 log.46676269._088027.job.log.1
[2025-10-12 21:03:11] -rw-------. 1 boincer umatlas       357 Oct 12 21:03 output.list
[2025-10-12 21:03:11] -rw-r--r--. 1 boincer umatlas       620 Oct 12 21:03 runtime_log
[2025-10-12 21:03:11] -rw-------. 1 boincer umatlas    716800 Oct 12 21:03 result.tar.gz
[2025-10-12 21:03:11] -rw-r--r--. 1 boincer umatlas      8705 Oct 12 21:03 runtime_log.err
[2025-10-12 21:03:11] -rw-------. 1 boincer umatlas       650 Oct 12 21:03 iu1MDm8KHS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmVsUMDmIpFQLo.diag
[2025-10-12 21:03:11] -rw-r--r--. 1 boincer umatlas     21877 Oct 12 21:03 stderr.txt
[2025-10-12 21:03:12] HITS file was successfully produced:
[2025-10-12 21:03:12] -rw-------. 1 boincer umatlas 198844386 Oct 12 21:01 shared/HITS.pool.root.1
[2025-10-12 21:03:12]  *** Contents of shared directory: ***
[2025-10-12 21:03:12] total 410392
[2025-10-12 21:03:12] -rw-r--r--. 2 boincer umatlas 220080545 Oct 12 20:25 ATLAS.root_0
[2025-10-12 21:03:12] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 20:25 start_atlas.sh
[2025-10-12 21:03:12] -rw-r--r--. 2 boincer umatlas    569677 Oct 12 20:25 input.tar.gz
[2025-10-12 21:03:12] -rw-------. 1 boincer umatlas 198844386 Oct 12 21:01 HITS.pool.root.1
[2025-10-12 21:03:12] -rw-------. 1 boincer umatlas    716800 Oct 12 21:03 result.tar.gz
21:03:13 (349646): run_atlas exited; CPU time 20676.354676
21:03:13 (349646): called boinc_finish(0)

</stderr_txt>
]]>

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