Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:46:43 (374482): wrapper (7.7.26015): starting
19:46:43 (374482): wrapper: running run_atlas (--nthreads 10)
[2025-10-12 19:46:43] Arguments: --nthreads 10
[2025-10-12 19:46:43] Threads: 10
[2025-10-12 19:46:43] Checking for CVMFS
[2025-10-12 19:46:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:46:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:46:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:46:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:46:45] 2.13.2.0 342865 27940 108824 151641 1 271 25565549 40960000 32978 16776704 0 208711073 99.774 117220485 46636 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 19:46:45] CVMFS is ok
[2025-10-12 19:46:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:46:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:46:45] Further information can be found at the LHC@home message board.
[2025-10-12 19:46:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:46:45] Checking for apptainer binary...
[2025-10-12 19:46:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:46:45] Running /usr/bin/apptainer --version
[2025-10-12 19:46:45] apptainer version 1.4.3-1.el9
[2025-10-12 19:46:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:46:45] c-208-36.aglt2.org
[2025-10-12 19:46:45] apptainer works
[2025-10-12 19:46:45] Set ATHENA_PROC_NUMBER=10
[2025-10-12 19:46:45] Set ATHENA_CORE_NUMBER=10
[2025-10-12 19:46:45] Starting ATLAS job with PandaID=6840714533
[2025-10-12 19:46:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:02:56]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:02:56]  workdir=None
[2025-10-12 21:02:56] ]
[2025-10-12 21:02:56] 2025-10-13 01:01:42,092 | INFO     | transferring file log.46676269._087929.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840714533/log.46676269._087929.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 21:02:56] 2025-10-13 01:01:42,092 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840714533/log.46676269._087929.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._087929.job
[2025-10-12 21:02:56] 2025-10-13 01:01:42,109 | INFO     | adding to output.list: log.46676269._087929.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/77/log.46676269._087929.job.log.tg
[2025-10-12 21:02:56] 2025-10-13 01:01:42,110 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 21:02:56] 2025-10-13 01:01:42,110 | INFO     | summary of transferred files:
[2025-10-12 21:02:56] 2025-10-13 01:01:42,110 | INFO     |  -- lfn=log.46676269._087929.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 21:02:56] 2025-10-13 01:01:42,110 | INFO     | stage-out finished correctly
[2025-10-12 21:02:56] 2025-10-13 01:01:42,160 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 21:02:56] 2025-10-13 01:01:42,384 | INFO     | time since job start (4441s) is within the limit (172800.0s)
[2025-10-12 21:02:56] 2025-10-13 01:01:42,519 | INFO     | job 6840714533 has state=finished
[2025-10-12 21:02:56] 2025-10-13 01:01:42,520 | INFO     | preparing for final server update for job 6840714533 in state='finished'
[2025-10-12 21:02:56] 2025-10-13 01:01:42,520 | INFO     | this job has now completed (state=finished)
[2025-10-12 21:02:56] 2025-10-13 01:01:42,520 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 21:02:56] 2025-10-13 01:01:42,520 | INFO     | log transfer has been attempted: DONE
[2025-10-12 21:02:56] 2025-10-13 01:01:42,520 | INFO     | job 6840714533 has finished - writing final server update
[2025-10-12 21:02:56] 2025-10-13 01:01:42,520 | INFO     | total number of processed events: 400 (read)
[2025-10-12 21:02:56] 2025-10-13 01:01:42,521 | INFO     | executing command: lscpu
[2025-10-12 21:02:56] 2025-10-13 01:01:42,601 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 21:02:56] 2025-10-13 01:01:44,397 | INFO     | time since job start (4443s) is within the limit (172800.0s)
[2025-10-12 21:02:56] 2025-10-13 01:01:45,939 | INFO     | PID=383357 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 21:02:56] 2025-10-13 01:01:45,939 | INFO     | .. there are 36 such processes running
[2025-10-12 21:02:56] 2025-10-13 01:01:46,739 | WARNING  | process 398155 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 21:02:56] 2025-10-13 01:01:46,739 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840714533/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:02:56] 2025-10-13 01:01:46,939 | INFO     | time since job start (4445s) is within the limit (172800.0s)
[2025-10-12 21:02:56] 2025-10-13 01:01:47,156 | INFO     | number of running child processes to parent process 398155: 1
[2025-10-12 21:02:56] 2025-10-13 01:01:47,156 | INFO     | maximum number of monitored processes: 7
[2025-10-12 21:02:56] 2025-10-13 01:01:48,946 | INFO     | time since job start (4447s) is within the limit (172800.0s)
[2025-10-12 21:02:56] 2025-10-13 01:01:49,662 | INFO     | monitor loop #303: job 0:6840714533 is in state 'finished'
[2025-10-12 21:02:56] 2025-10-13 01:01:49,663 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:02:56] 2025-10-13 01:01:50,953 | INFO     | time since job start (4449s) is within the limit (172800.0s)
[2025-10-12 21:02:56] 2025-10-13 01:01:51,761 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 21:02:56] 2025-10-13 01:01:51,766 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3793.3263437499986
[2025-10-12 21:02:56] 2025-10-13 01:01:51,782 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840714533/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:02:56] 2025-10-13 01:01:51,783 | INFO     | extracted standard info from prmon json
[2025-10-12 21:02:56] 2025-10-13 01:01:51,783 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:02:56] 2025-10-13 01:01:51,783 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:02:56] 2025-10-13 01:01:51,783 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:02:56] 2025-10-13 01:01:51,783 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:02:56] 2025-10-13 01:01:51,784 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:02:56] 2025-10-13 01:01:51,784 | INFO     | sum of square deviations: 81260237.859375
[2025-10-12 21:02:56] 2025-10-13 01:01:51,784 | INFO     | sum of deviations: 1476871447.578125
[2025-10-12 21:02:56] 2025-10-13 01:01:51,784 | INFO     | mean x: 1760315211.546875
[2025-10-12 21:02:56] 2025-10-13 01:01:51,784 | INFO     | mean y: 2585646.640625
[2025-10-12 21:02:56] 2025-10-13 01:01:51,784 | INFO     | -- intersect: -31990420319.820404
[2025-10-12 21:02:56] 2025-10-13 01:01:51,784 | INFO     | intersect: -31990420319.820404
[2025-10-12 21:02:56] 2025-10-13 01:01:51,784 | INFO     | chi2: 0.18403193043723823
[2025-10-12 21:02:56] 2025-10-13 01:01:51,784 | INFO     | -- intersect: -31990420319.820404
[2025-10-12 21:02:56] 2025-10-13 01:01:51,784 | INFO     | current memory leak: 18.17 B/s (using 64 data points, chi2=0.18)
[2025-10-12 21:02:56] 2025-10-13 01:01:51,785 | INFO     | could have reported an average CPU frequency of 3785 MHz (6 samples)
[2025-10-12 21:02:56] 2025-10-13 01:01:51,785 | INFO     | ..............................
[2025-10-12 21:02:56] 2025-10-13 01:01:51,785 | INFO     | . Timing measurements:
[2025-10-12 21:02:56] 2025-10-13 01:01:51,785 | INFO     | . get job = 0 s
[2025-10-12 21:02:56] 2025-10-13 01:01:51,785 | INFO     | . initial setup = 5 s
[2025-10-12 21:02:56] 2025-10-13 01:01:51,785 | INFO     | . payload setup = 37 s
[2025-10-12 21:02:56] 2025-10-13 01:01:51,785 | INFO     | . stage-in = 0 s
[2025-10-12 21:02:56] 2025-10-13 01:01:51,785 | INFO     | . payload execution = 4338 s
[2025-10-12 21:02:56] 2025-10-13 01:01:51,785 | INFO     | . stage-out = 0 s
[2025-10-12 21:02:56] 2025-10-13 01:01:51,785 | INFO     | . log creation = 0 s
[2025-10-12 21:02:56] 2025-10-13 01:01:51,785 | INFO     | ..............................
[2025-10-12 21:02:56] 2025-10-13 01:01:51,843 | INFO     | 
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | job summary report
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | --------------------------------------------------
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | PanDA job id: 6840714533
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | task id: 46676269
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | errors: (none)
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | pilot state: finished 
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | transexitcode: 0
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | exeerrorcode: 0
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | exeerrordiag: 
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | exitcode: 0
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | exitmsg: OK
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | cpuconsumptiontime: 23687 s
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | nevents: 400
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | neventsw: 0
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | pid: 398155
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | pgrp: 398155
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | corecount: 10
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | event service: False
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 23: 2348913, 26: 2349203, 33: 2349231, 4379: 2375552, 4380: 2384605, 4390: 2384743}
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | --------------------------------------------------
[2025-10-12 21:02:56] 2025-10-13 01:01:51,844 | INFO     | 
[2025-10-12 21:02:56] 2025-10-13 01:01:51,845 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 21:02:56] 2025-10-13 01:01:51,985 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,985 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,985 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,985 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,985 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,985 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,985 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,985 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,985 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,985 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,985 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,985 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,985 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,985 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,986 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,986 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,986 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,986 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:02:56] 2025-10-13 01:01:51,986 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,986 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:02:56] 2025-10-13 01:01:51,986 | INFO     | job 6840714533 has completed (purged errors)
[2025-10-12 21:02:56] 2025-10-13 01:01:51,986 | INFO     | overall cleanup function is called
[2025-10-12 21:02:56] 2025-10-13 01:01:53,012 | INFO     | --- collectZombieJob: --- 10, [398155]
[2025-10-12 21:02:56] 2025-10-13 01:01:53,013 | INFO     | zombie collector waiting for pid 398155
[2025-10-12 21:02:56] 2025-10-13 01:01:53,013 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:02:56] 2025-10-13 01:01:53,013 | INFO     | collected zombie processes
[2025-10-12 21:02:56] 2025-10-13 01:01:53,013 | INFO     | will attempt to kill all subprocesses of pid=398155
[2025-10-12 21:02:56] 2025-10-13 01:01:53,740 | INFO     | process IDs to be killed: [398155] (in reverse order)
[2025-10-12 21:02:56] 2025-10-13 01:01:53,917 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:02:56] 2025-10-13 01:01:53,917 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:02:56] 2025-10-13 01:01:53,940 | INFO     | did not find any defunct processes belonging to 398155
[2025-10-12 21:02:56] 2025-10-13 01:01:53,966 | INFO     | did not find any defunct processes belonging to 398155
[2025-10-12 21:02:56] 2025-10-13 01:01:53,966 | INFO     | ready for new job
[2025-10-12 21:02:56] 2025-10-13 01:01:53,966 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:02:56] 2025-10-13 01:01:53,968 | INFO     | ***************************************
[2025-10-12 21:02:56] 2025-10-13 01:01:53,968 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:02:56] 2025-10-13 01:01:53,968 | INFO     | ***************************************
[2025-10-12 21:02:56] 2025-10-13 01:01:53,968 | INFO     | 
[2025-10-12 21:02:56] 2025-10-13 01:01:53,973 | INFO     | architecture information:
[2025-10-12 21:02:56] 2025-10-13 01:01:53,974 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:02:56] 2025-10-13 01:01:53,994 | INFO     | cat /etc/os-release:
[2025-10-12 21:02:56] NAME="CentOS Linux"
[2025-10-12 21:02:56] VERSION="7 (Core)"
[2025-10-12 21:02:56] ID="centos"
[2025-10-12 21:02:56] ID_LIKE="rhel fedora"
[2025-10-12 21:02:56] VERSION_ID="7"
[2025-10-12 21:02:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:02:56] ANSI_COLOR="0;31"
[2025-10-12 21:02:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:02:56] HOME_URL="https://www.centos.org/"
[2025-10-12 21:02:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:02:56] 
[2025-10-12 21:02:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:02:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:02:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:02:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:02:56] 
[2025-10-12 21:02:56] 2025-10-13 01:01:53,994 | INFO     | ***************************************
[2025-10-12 21:02:56] 2025-10-13 01:01:54,498 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 21:02:56] 2025-10-13 01:01:54,514 | INFO     | sufficient remaining disk space (169425764352 B)
[2025-10-12 21:02:56] 2025-10-13 01:01:54,514 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:02:56] 2025-10-13 01:01:54,515 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:02:56] 2025-10-13 01:01:54,515 | INFO     | update_server=False
[2025-10-12 21:02:56] 2025-10-13 01:01:54,515 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:02:56] 2025-10-13 01:01:54,709 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 21:02:56] 2025-10-13 01:01:54,710 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 21:02:56] 2025-10-13 01:01:54,710 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:02:56] 2025-10-13 01:01:54,710 | INFO     | will abort loop
[2025-10-12 21:02:56] 2025-10-13 01:01:55,154 | INFO     | all data control threads have been joined
[2025-10-12 21:02:56] 2025-10-13 01:01:55,188 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:02:56] 2025-10-13 01:01:55,216 | INFO     | all job control threads have been joined
[2025-10-12 21:02:56] 2025-10-13 01:01:55,526 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:02:56] 2025-10-13 01:01:55,716 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:02:56] 2025-10-13 01:01:55,809 | INFO     | all payload control threads have been joined
[2025-10-12 21:02:56] 2025-10-13 01:01:55,860 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:02:56] 2025-10-13 01:01:55,926 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:02:56] 2025-10-13 01:01:55,930 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:02:56] 2025-10-13 01:01:56,166 | INFO     | [data] control thread has finished
[2025-10-12 21:02:56] 2025-10-13 01:01:56,221 | INFO     | [job] control thread has finished
[2025-10-12 21:02:56] 2025-10-13 01:01:56,315 | INFO     | [job] validate thread has finished
[2025-10-12 21:02:56] 2025-10-13 01:01:56,397 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:02:56] 2025-10-13 01:01:56,637 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:02:56] 2025-10-13 01:01:56,814 | INFO     | [payload] control thread has finished
[2025-10-12 21:02:56] 2025-10-13 01:01:56,857 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:02:56] 2025-10-13 01:01:56,883 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:02:56] 2025-10-13 01:01:57,194 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:02:56] 2025-10-13 01:01:57,249 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:02:56] 2025-10-13 01:01:57,862 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:02:56] 2025-10-13 01:02:01,258 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:02:56] 2025-10-13 01:02:04,732 | INFO     | job.realtimelogging is not enabled
[2025-10-12 21:02:56] 2025-10-13 01:02:05,739 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:02:56] 2025-10-13 01:02:24,609 | INFO     | PID=383357 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 21:02:56] 2025-10-13 01:02:24,610 | INFO     | .. there are 36 such processes running
[2025-10-12 21:02:56] 2025-10-13 01:02:24,610 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:02:56] 2025-10-13 01:02:24,611 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:02:56] 2025-10-13 01:02:24,611 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:02:56] 2025-10-13 01:02:32,211 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-12 21:02:56] 2025-10-13 01:02:48,247 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:02:56] 2025-10-13 01:02:50,026 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140671871006528)>', '<ExcThread(monitor, started 140671235118848)>']
[2025-10-12 21:02:56] 2025-10-13 01:02:50,774 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:02:56] 2025-10-13 01:02:50,776 | INFO     | [monitor] control thread has ended
[2025-10-12 21:02:56] 2025-10-13 01:02:55,051 | INFO     | all workflow threads have been joined
[2025-10-12 21:02:56] 2025-10-13 01:02:55,052 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:02:56] 2025-10-13 01:02:55,052 | INFO     | traces error code: 0
[2025-10-12 21:02:56] 2025-10-13 01:02:55,052 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:02:56] 2025-10-13 01:02:55,317 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:02:56] 2025-10-13 01:02:55,350 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:02:56] 2025-10-13 01:02:55,361 [wrapper] pilotpid: 383357
[2025-10-12 21:02:56] 2025-10-13 01:02:55,382 [wrapper] Pilot exit status: 0
[2025-10-12 21:02:56] 2025-10-13 01:02:55,421 [wrapper] pandaids: 6840714533
[2025-10-12 21:02:56] 2025-10-13 01:02:55,547 [wrapper] cleanup supervisor_pilot  857642 383358
[2025-10-12 21:02:56] 2025-10-13 01:02:55,560 [wrapper] Test setup, not cleaning
[2025-10-12 21:02:56] 2025-10-13 01:02:55,575 [wrapper] apfmon messages muted
[2025-10-12 21:02:56] 2025-10-13 01:02:55,582 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:02:56] 2025-10-13 01:02:55,585 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:02:56]  *** Error codes and diagnostics ***
[2025-10-12 21:02:56]     "exeErrorCode": 0,
[2025-10-12 21:02:56]     "exeErrorDiag": "",
[2025-10-12 21:02:56]     "pilotErrorCode": 0,
[2025-10-12 21:02:56]     "pilotErrorDiag": "",
[2025-10-12 21:02:56]  *** Listing of results directory ***
[2025-10-12 21:02:56] total 411528
[2025-10-12 21:02:56] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 15:28 pilot3.tar.gz
[2025-10-12 21:02:56] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 15:47 queuedata.json
[2025-10-12 21:02:56] -rwx------. 1 boincer umatlas     36292 Oct 12 15:48 runpilot2-wrapper.sh
[2025-10-12 21:02:56] -rw-r--r--. 1 boincer umatlas       100 Oct 12 19:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:02:56] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 19:46 run_atlas
[2025-10-12 21:02:56] -rw-r--r--. 1 boincer umatlas       105 Oct 12 19:46 job.xml
[2025-10-12 21:02:56] -rw-r--r--. 2 boincer umatlas 220206965 Oct 12 19:46 EVNT.46676267._004471.pool.root.1
[2025-10-12 21:02:56] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 19:46 start_atlas.sh
[2025-10-12 21:02:56] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 19:46 shared
[2025-10-12 21:02:56] -rw-r--r--. 2 boincer umatlas    569682 Oct 12 19:46 input.tar.gz
[2025-10-12 21:02:56] -rw-r--r--. 1 boincer umatlas         0 Oct 12 19:46 boinc_lockfile
[2025-10-12 21:02:56] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 19:46 pandaJob.out
[2025-10-12 21:02:56] -rw-------. 1 boincer umatlas    975603 Oct 12 19:47 agis_schedconf.cvmfs.json
[2025-10-12 21:02:56] -rw-------. 1 boincer umatlas   1560580 Oct 12 19:47 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:02:56] drwx------. 5 boincer umatlas      4096 Oct 12 19:47 pilot3
[2025-10-12 21:02:56] -rw-r--r--. 1 boincer umatlas      7173 Oct 12 21:00 init_data.xml
[2025-10-12 21:02:56] -rw-------. 1 boincer umatlas 195324282 Oct 12 21:01 HITS.46676269._087929.pool.root.1
[2025-10-12 21:02:56] -rw-r--r--. 1 boincer umatlas       529 Oct 12 21:01 boinc_task_state.xml
[2025-10-12 21:02:56] -rw-------. 1 boincer umatlas      1049 Oct 12 21:01 memory_monitor_summary.json
[2025-10-12 21:02:56] -rw-------. 1 boincer umatlas    366537 Oct 12 21:01 log.46676269._087929.job.log.tgz.1
[2025-10-12 21:02:56] -rw-------. 1 boincer umatlas      7815 Oct 12 21:01 heartbeat.json
[2025-10-12 21:02:56] -rw-------. 1 boincer umatlas        95 Oct 12 21:02 pilot_heartbeat.json
[2025-10-12 21:02:56] -rw-r--r--. 1 boincer umatlas        27 Oct 12 21:02 wrapper_checkpoint.txt
[2025-10-12 21:02:56] -rw-------. 1 boincer umatlas      5082 Oct 12 21:02 pilotlog.txt
[2025-10-12 21:02:56] -rw-------. 1 boincer umatlas    617441 Oct 12 21:02 log.46676269._087929.job.log.1
[2025-10-12 21:02:56] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 21:02 boinc_mmap_file
[2025-10-12 21:02:56] -rw-------. 1 boincer umatlas       357 Oct 12 21:02 output.list
[2025-10-12 21:02:56] -rw-r--r--. 1 boincer umatlas       620 Oct 12 21:02 runtime_log
[2025-10-12 21:02:56] -rw-------. 1 boincer umatlas   1003520 Oct 12 21:02 result.tar.gz
[2025-10-12 21:02:56] -rw-r--r--. 1 boincer umatlas      8705 Oct 12 21:02 runtime_log.err
[2025-10-12 21:02:56] -rw-------. 1 boincer umatlas       656 Oct 12 21:02 h7NKDmtEHS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKLlNDm10Yu7n.diag
[2025-10-12 21:02:56] -rw-r--r--. 1 boincer umatlas     22320 Oct 12 21:02 stderr.txt
[2025-10-12 21:02:56] HITS file was successfully produced:
[2025-10-12 21:02:56] -rw-------. 1 boincer umatlas 195324282 Oct 12 21:01 shared/HITS.pool.root.1
[2025-10-12 21:02:56]  *** Contents of shared directory: ***
[2025-10-12 21:02:56] total 407360
[2025-10-12 21:02:56] -rw-r--r--. 2 boincer umatlas 220206965 Oct 12 19:46 ATLAS.root_0
[2025-10-12 21:02:56] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 19:46 start_atlas.sh
[2025-10-12 21:02:56] -rw-r--r--. 2 boincer umatlas    569682 Oct 12 19:46 input.tar.gz
[2025-10-12 21:02:56] -rw-------. 1 boincer umatlas 195324282 Oct 12 21:01 HITS.pool.root.1
[2025-10-12 21:02:56] -rw-------. 1 boincer umatlas   1003520 Oct 12 21:02 result.tar.gz
21:02:57 (374482): run_atlas exited; CPU time 23828.457866
21:02:57 (374482): called boinc_finish(0)

</stderr_txt>
]]>

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