Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:12:00 (4073662): wrapper (7.7.26015): starting
16:12:00 (4073662): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 16:12:00] Arguments: --nthreads 6
[2025-10-13 16:12:00] Threads: 6
[2025-10-13 16:12:00] Checking for CVMFS
[2025-10-13 16:12:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 16:12:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 16:12:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 16:12:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 16:12:01] 2.12.7.0 249871 6994 95016 151652 1 57 14011524 20971521 929 130560 0 11897283 99.996 240683 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 16:12:01] CVMFS is ok
[2025-10-13 16:12:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 16:12:01] Checking for apptainer binary...
[2025-10-13 16:12:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 16:12:01] Running /usr/bin/apptainer --version
[2025-10-13 16:12:01] apptainer version 1.4.0-1.el9
[2025-10-13 16:12:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 16:12:01] testio005
[2025-10-13 16:12:01] apptainer works
[2025-10-13 16:12:01] Set ATHENA_PROC_NUMBER=6
[2025-10-13 16:12:01] Set ATHENA_CORE_NUMBER=6
[2025-10-13 16:12:01] Starting ATLAS job with PandaID=6840715342
[2025-10-13 16:12:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 17:41:42]  *** The last 200 lines of the pilot log: ***
[2025-10-13 17:41:42]  lfn=log.46676269._088294.job.log.tgz.1
[2025-10-13 17:41:42]  mtime=0
[2025-10-13 17:41:42]  protocol_id=None
[2025-10-13 17:41:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 17:41:42]  replicas=None
[2025-10-13 17:41:42]  scope=mc23_13p6TeV
[2025-10-13 17:41:42]  status=None
[2025-10-13 17:41:42]  status_code=0
[2025-10-13 17:41:42]  storage_token=
[2025-10-13 17:41:42]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6840715342/log.46676269._088294.job.log.tgz.1
[2025-10-13 17:41:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/75/c0/log.46676269._088294.job.log.tgz.1
[2025-10-13 17:41:42]  workdir=None
[2025-10-13 17:41:42] ]
[2025-10-13 17:41:42] 2025-10-13 08:40:40,733 | INFO     | transferring file log.46676269._088294.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6840715342/log.46676269._088294.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 17:41:42] 2025-10-13 08:40:40,733 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6840715342/log.46676269._088294.job.log.tgz.1 /var/lib/boinc/slots/1/log.46676269._088294.job
[2025-10-13 17:41:42] 2025-10-13 08:40:40,747 | INFO     | adding to output.list: log.46676269._088294.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/75/c0/log.46676269._088294.job.log.tg
[2025-10-13 17:41:42] 2025-10-13 08:40:40,747 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 17:41:42] 2025-10-13 08:40:40,748 | INFO     | summary of transferred files:
[2025-10-13 17:41:42] 2025-10-13 08:40:40,748 | INFO     |  -- lfn=log.46676269._088294.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 17:41:42] 2025-10-13 08:40:40,748 | INFO     | stage-out finished correctly
[2025-10-13 17:41:42] 2025-10-13 08:40:41,810 | INFO     | time since job start (5292s) is within the limit (172800.0s)
[2025-10-13 17:41:42] 2025-10-13 08:40:42,232 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 17:41:42] 2025-10-13 08:40:42,570 | INFO     | job 6840715342 has state=finished
[2025-10-13 17:41:42] 2025-10-13 08:40:42,570 | INFO     | preparing for final server update for job 6840715342 in state='finished'
[2025-10-13 17:41:42] 2025-10-13 08:40:42,571 | INFO     | this job has now completed (state=finished)
[2025-10-13 17:41:42] 2025-10-13 08:40:42,571 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 17:41:42] 2025-10-13 08:40:42,571 | INFO     | log transfer has been attempted: DONE
[2025-10-13 17:41:42] 2025-10-13 08:40:42,571 | INFO     | job 6840715342 has finished - writing final server update
[2025-10-13 17:41:42] 2025-10-13 08:40:42,571 | INFO     | total number of processed events: 400 (read)
[2025-10-13 17:41:42] 2025-10-13 08:40:42,572 | INFO     | executing command: lscpu
[2025-10-13 17:41:42] 2025-10-13 08:40:42,590 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 17:41:42] 2025-10-13 08:40:43,815 | INFO     | time since job start (5294s) is within the limit (172800.0s)
[2025-10-13 17:41:42] 2025-10-13 08:40:44,389 | WARNING  | process 4084235 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 17:41:42] 2025-10-13 08:40:44,389 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6840715342/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 17:41:42] 2025-10-13 08:40:44,471 | INFO     | number of running child processes to parent process 4084235: 1
[2025-10-13 17:41:42] 2025-10-13 08:40:44,471 | INFO     | maximum number of monitored processes: 6
[2025-10-13 17:41:42] 2025-10-13 08:40:45,747 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 17:41:42] 2025-10-13 08:40:45,749 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3316.8245625
[2025-10-13 17:41:42] 2025-10-13 08:40:45,751 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6840715342/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 17:41:42] 2025-10-13 08:40:45,752 | INFO     | extracted standard info from prmon json
[2025-10-13 17:41:42] 2025-10-13 08:40:45,752 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 17:41:42] 2025-10-13 08:40:45,752 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 17:41:42] 2025-10-13 08:40:45,752 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 17:41:42] 2025-10-13 08:40:45,752 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 17:41:42] 2025-10-13 08:40:45,753 | INFO     | fitting pss+swap vs Time
[2025-10-13 17:41:42] 2025-10-13 08:40:45,754 | INFO     | sum of square deviations: 158737860.0
[2025-10-13 17:41:42] 2025-10-13 08:40:45,754 | INFO     | sum of deviations: -3220131409.5
[2025-10-13 17:41:42] 2025-10-13 08:40:45,754 | INFO     | mean x: 1760342286.5
[2025-10-13 17:41:42] 2025-10-13 08:40:45,754 | INFO     | mean y: 2499942.5625
[2025-10-13 17:41:42] 2025-10-13 08:40:45,754 | INFO     | -- intersect: 35712528339.25185
[2025-10-13 17:41:42] 2025-10-13 08:40:45,754 | INFO     | intersect: 35712528339.25185
[2025-10-13 17:41:42] 2025-10-13 08:40:45,754 | INFO     | chi2: 0.04215885017349305
[2025-10-13 17:41:42] 2025-10-13 08:40:45,754 | INFO     | -- intersect: 35712528339.25185
[2025-10-13 17:41:42] 2025-10-13 08:40:45,754 | INFO     | current memory leak: -20.29 B/s (using 80 data points, chi2=0.04)
[2025-10-13 17:41:42] 2025-10-13 08:40:45,755 | INFO     | could have reported an average CPU frequency of 3317 MHz (6 samples)
[2025-10-13 17:41:42] 2025-10-13 08:40:45,755 | INFO     | ..............................
[2025-10-13 17:41:42] 2025-10-13 08:40:45,755 | INFO     | . Timing measurements:
[2025-10-13 17:41:42] 2025-10-13 08:40:45,755 | INFO     | . get job = 0 s
[2025-10-13 17:41:42] 2025-10-13 08:40:45,755 | INFO     | . initial setup = 22 s
[2025-10-13 17:41:42] 2025-10-13 08:40:45,755 | INFO     | . payload setup = 4 s
[2025-10-13 17:41:42] 2025-10-13 08:40:45,755 | INFO     | . stage-in = 0 s
[2025-10-13 17:41:42] 2025-10-13 08:40:45,755 | INFO     | . payload execution = 5267 s
[2025-10-13 17:41:42] 2025-10-13 08:40:45,755 | INFO     | . stage-out = 0 s
[2025-10-13 17:41:42] 2025-10-13 08:40:45,755 | INFO     | . log creation = 0 s
[2025-10-13 17:41:42] 2025-10-13 08:40:45,755 | INFO     | ..............................
[2025-10-13 17:41:42] 2025-10-13 08:40:45,818 | INFO     | 
[2025-10-13 17:41:42] 2025-10-13 08:40:45,818 | INFO     | job summary report
[2025-10-13 17:41:42] 2025-10-13 08:40:45,819 | INFO     | --------------------------------------------------
[2025-10-13 17:41:42] 2025-10-13 08:40:45,819 | INFO     | PanDA job id: 6840715342
[2025-10-13 17:41:42] 2025-10-13 08:40:45,819 | INFO     | task id: 46676269
[2025-10-13 17:41:42] 2025-10-13 08:40:45,819 | INFO     | errors: (none)
[2025-10-13 17:41:42] 2025-10-13 08:40:45,819 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 17:41:42] 2025-10-13 08:40:45,819 | INFO     | pilot state: finished 
[2025-10-13 17:41:42] 2025-10-13 08:40:45,819 | INFO     | transexitcode: 0
[2025-10-13 17:41:42] 2025-10-13 08:40:45,819 | INFO     | exeerrorcode: 0
[2025-10-13 17:41:42] 2025-10-13 08:40:45,819 | INFO     | exeerrordiag: 
[2025-10-13 17:41:42] 2025-10-13 08:40:45,820 | INFO     | time since job start (5296s) is within the limit (172800.0s)
[2025-10-13 17:41:42] 2025-10-13 08:40:45,820 | INFO     | exitcode: 0
[2025-10-13 17:41:42] 2025-10-13 08:40:45,820 | INFO     | exitmsg: OK
[2025-10-13 17:41:42] 2025-10-13 08:40:45,820 | INFO     | cpuconsumptiontime: 29177 s
[2025-10-13 17:41:42] 2025-10-13 08:40:45,820 | INFO     | nevents: 400
[2025-10-13 17:41:42] 2025-10-13 08:40:45,820 | INFO     | neventsw: 0
[2025-10-13 17:41:42] 2025-10-13 08:40:45,820 | INFO     | pid: 4084235
[2025-10-13 17:41:42] 2025-10-13 08:40:45,820 | INFO     | pgrp: 4084235
[2025-10-13 17:41:42] 2025-10-13 08:40:45,820 | INFO     | corecount: 6
[2025-10-13 17:41:42] 2025-10-13 08:40:45,820 | INFO     | event service: False
[2025-10-13 17:41:42] 2025-10-13 08:40:45,821 | INFO     | sizes: {0: 2348856, 4: 2349118, 11: 2349146, 5276: 2375689, 5277: 2384687, 5279: 2384743, 5283: 2385065}
[2025-10-13 17:41:42] 2025-10-13 08:40:45,821 | INFO     | --------------------------------------------------
[2025-10-13 17:41:42] 2025-10-13 08:40:45,821 | INFO     | 
[2025-10-13 17:41:42] 2025-10-13 08:40:45,821 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-13 17:41:42] 2025-10-13 08:40:45,836 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,836 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,836 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,836 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,836 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,836 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,836 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,836 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,837 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,837 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,837 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,837 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,837 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,837 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,837 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,837 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,837 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,837 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 17:41:42] 2025-10-13 08:40:45,837 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,837 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 17:41:42] 2025-10-13 08:40:45,837 | INFO     | job 6840715342 has completed (purged errors)
[2025-10-13 17:41:42] 2025-10-13 08:40:45,837 | INFO     | overall cleanup function is called
[2025-10-13 17:41:42] 2025-10-13 08:40:46,844 | INFO     | --- collectZombieJob: --- 10, [4084235]
[2025-10-13 17:41:42] 2025-10-13 08:40:46,844 | INFO     | zombie collector waiting for pid 4084235
[2025-10-13 17:41:42] 2025-10-13 08:40:46,844 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 17:41:42] 2025-10-13 08:40:46,844 | INFO     | collected zombie processes
[2025-10-13 17:41:42] 2025-10-13 08:40:46,845 | INFO     | will attempt to kill all subprocesses of pid=4084235
[2025-10-13 17:41:42] 2025-10-13 08:40:46,919 | INFO     | process IDs to be killed: [4084235] (in reverse order)
[2025-10-13 17:41:42] 2025-10-13 08:40:46,952 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 17:41:42] 2025-10-13 08:40:46,953 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 17:41:42] 2025-10-13 08:40:46,955 | INFO     | did not find any defunct processes belonging to 4084235
[2025-10-13 17:41:42] 2025-10-13 08:40:46,958 | INFO     | did not find any defunct processes belonging to 4084235
[2025-10-13 17:41:42] 2025-10-13 08:40:46,958 | INFO     | ready for new job
[2025-10-13 17:41:42] 2025-10-13 08:40:46,958 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 17:41:42] 2025-10-13 08:40:46,959 | INFO     | ***************************************
[2025-10-13 17:41:42] 2025-10-13 08:40:46,959 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 17:41:42] 2025-10-13 08:40:46,959 | INFO     | ***************************************
[2025-10-13 17:41:42] 2025-10-13 08:40:46,959 | INFO     | 
[2025-10-13 17:41:42] 2025-10-13 08:40:46,960 | INFO     | architecture information:
[2025-10-13 17:41:42] 2025-10-13 08:40:46,960 | INFO     | executing command: cat /etc/os-release
[2025-10-13 17:41:42] 2025-10-13 08:40:46,970 | INFO     | cat /etc/os-release:
[2025-10-13 17:41:42] NAME="CentOS Linux"
[2025-10-13 17:41:42] VERSION="7 (Core)"
[2025-10-13 17:41:42] ID="centos"
[2025-10-13 17:41:42] ID_LIKE="rhel fedora"
[2025-10-13 17:41:42] VERSION_ID="7"
[2025-10-13 17:41:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 17:41:42] ANSI_COLOR="0;31"
[2025-10-13 17:41:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 17:41:42] HOME_URL="https://www.centos.org/"
[2025-10-13 17:41:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 17:41:42] 
[2025-10-13 17:41:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 17:41:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 17:41:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 17:41:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 17:41:42] 
[2025-10-13 17:41:42] 2025-10-13 08:40:46,970 | INFO     | ***************************************
[2025-10-13 17:41:42] 2025-10-13 08:40:47,473 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-13 17:41:42] 2025-10-13 08:40:47,485 | INFO     | sufficient remaining disk space (96386154496 B)
[2025-10-13 17:41:42] 2025-10-13 08:40:47,485 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 17:41:42] 2025-10-13 08:40:47,485 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 17:41:42] 2025-10-13 08:40:47,485 | INFO     | update_server=False
[2025-10-13 17:41:42] 2025-10-13 08:40:47,485 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 17:41:42] 2025-10-13 08:40:47,485 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:41:42] 2025-10-13 08:40:47,486 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 17:41:42] 2025-10-13 08:40:47,486 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 17:41:42] 2025-10-13 08:40:47,486 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 17:41:42] 2025-10-13 08:40:47,486 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 17:41:42] 2025-10-13 08:40:47,978 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:41:42] 2025-10-13 08:40:47,979 | INFO     | aborting loop
[2025-10-13 17:41:42] 2025-10-13 08:40:48,224 | INFO     | all payload control threads have been joined
[2025-10-13 17:41:42] 2025-10-13 08:40:48,300 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 17:41:42] 2025-10-13 08:40:48,344 | INFO     | all data control threads have been joined
[2025-10-13 17:41:42] 2025-10-13 08:40:48,491 | INFO     | [job] retrieve thread has finished
[2025-10-13 17:41:42] 2025-10-13 08:40:48,491 | INFO     | [job] queue monitor thread has finished
[2025-10-13 17:41:42] 2025-10-13 08:40:48,609 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 17:41:42] 2025-10-13 08:40:48,679 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 17:41:42] 2025-10-13 08:40:48,695 | INFO     | [data] copytool_in thread has finished
[2025-10-13 17:41:42] 2025-10-13 08:40:48,820 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 17:41:42] 2025-10-13 08:40:48,851 | INFO     | [payload] failed_post thread has finished
[2025-10-13 17:41:42] 2025-10-13 08:40:48,916 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 17:41:42] 2025-10-13 08:40:48,984 | INFO     | [job] job monitor thread has finished
[2025-10-13 17:41:42] 2025-10-13 08:40:49,101 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 17:41:42] 2025-10-13 08:40:49,135 | INFO     | [job] validate thread has finished
[2025-10-13 17:41:42] 2025-10-13 08:40:49,183 | INFO     | all job control threads have been joined
[2025-10-13 17:41:42] 2025-10-13 08:40:49,228 | INFO     | [payload] control thread has finished
[2025-10-13 17:41:42] 2025-10-13 08:40:49,350 | INFO     | [data] control thread has finished
[2025-10-13 17:41:42] 2025-10-13 08:40:49,609 | INFO     | [payload] validate_post thread has finished
[2025-10-13 17:41:42] 2025-10-13 08:40:50,188 | INFO     | [job] control thread has finished
[2025-10-13 17:41:42] 2025-10-13 08:40:50,825 | INFO     | [data] copytool_out thread has finished
[2025-10-13 17:41:42] 2025-10-13 08:40:52,306 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 17:41:42] 2025-10-13 08:41:36,484 | INFO     | [monitor] cgroup control has ended
[2025-10-13 17:41:42] 2025-10-13 08:41:36,903 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139870534702912)>', '<ExcThread(monitor, started 139869753956096)>']
[2025-10-13 17:41:42] 2025-10-13 08:41:37,735 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 17:41:42] 2025-10-13 08:41:37,735 | INFO     | [monitor] control thread has ended
[2025-10-13 17:41:42] 2025-10-13 08:41:41,926 | INFO     | all workflow threads have been joined
[2025-10-13 17:41:42] 2025-10-13 08:41:41,927 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 17:41:42] 2025-10-13 08:41:41,927 | INFO     | traces error code: 0
[2025-10-13 17:41:42] 2025-10-13 08:41:41,927 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 17:41:42] 2025-10-13 08:41:42,008 [wrapper] ==== pilot stdout END ====
[2025-10-13 17:41:42] 2025-10-13 08:41:42,010 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 17:41:42] 2025-10-13 08:41:42,012 [wrapper] pilotpid: 4077473
[2025-10-13 17:41:42] 2025-10-13 08:41:42,014 [wrapper] Pilot exit status: 0
[2025-10-13 17:41:42] 2025-10-13 08:41:42,022 [wrapper] pandaids: 6840715342
[2025-10-13 17:41:42] 2025-10-13 08:41:42,045 [wrapper] cleanup supervisor_pilot 4118558 4077474
[2025-10-13 17:41:42] 2025-10-13 08:41:42,047 [wrapper] Test setup, not cleaning
[2025-10-13 17:41:42] 2025-10-13 08:41:42,049 [wrapper] apfmon messages muted
[2025-10-13 17:41:42] 2025-10-13 08:41:42,052 [wrapper] ==== wrapper stdout END ====
[2025-10-13 17:41:42] 2025-10-13 08:41:42,054 [wrapper] ==== wrapper stderr END ====
[2025-10-13 17:41:42]  *** Error codes and diagnostics ***
[2025-10-13 17:41:42]     "exeErrorCode": 0,
[2025-10-13 17:41:42]     "exeErrorDiag": "",
[2025-10-13 17:41:42]     "pilotErrorCode": 0,
[2025-10-13 17:41:42]     "pilotErrorDiag": "",
[2025-10-13 17:41:42]  *** Listing of results directory ***
[2025-10-13 17:41:42] total 411736
[2025-10-13 17:41:42] -rw-r--r--. 1 boinc boinc    557409 Oct 13 04:50 pilot3.tar.gz
[2025-10-13 17:41:42] -rw-r--r--. 1 boinc boinc      5112 Oct 13 05:05 queuedata.json
[2025-10-13 17:41:42] -rwx------. 1 boinc boinc     36292 Oct 13 05:06 runpilot2-wrapper.sh
[2025-10-13 17:41:42] -rw-r--r--. 1 boinc boinc       100 Oct 13 16:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 17:41:42] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 16:12 run_atlas
[2025-10-13 17:41:42] -rw-r--r--. 1 boinc boinc       105 Oct 13 16:12 job.xml
[2025-10-13 17:41:42] -rw-r--r--. 1 boinc boinc      9362 Oct 13 16:12 init_data.xml
[2025-10-13 17:41:42] -rw-r--r--. 2 boinc boinc 222250554 Oct 13 16:12 EVNT.46676267._004486.pool.root.1
[2025-10-13 17:41:42] -rw-r--r--. 2 boinc boinc     15120 Oct 13 16:12 start_atlas.sh
[2025-10-13 17:41:42] drwxrwx--x. 2 boinc boinc        68 Oct 13 16:12 shared
[2025-10-13 17:41:42] -rw-r--r--. 2 boinc boinc    569677 Oct 13 16:12 input.tar.gz
[2025-10-13 17:41:42] -rw-r--r--. 1 boinc boinc         0 Oct 13 16:12 boinc_lockfile
[2025-10-13 17:41:42] -rw-r--r--. 1 boinc boinc      2549 Oct 13 16:12 pandaJob.out
[2025-10-13 17:41:42] -rw-------. 1 boinc boinc    972849 Oct 13 16:12 agis_schedconf.cvmfs.json
[2025-10-13 17:41:42] -rw-------. 1 boinc boinc   1560580 Oct 13 16:12 agis_ddmendpoints.agis.ALL.json
[2025-10-13 17:41:42] drwx------. 5 boinc boinc      4096 Oct 13 16:12 pilot3
[2025-10-13 17:41:42] -rw-------. 1 boinc boinc        95 Oct 13 17:39 pilot_heartbeat.json
[2025-10-13 17:41:42] -rw-------. 1 boinc boinc 193316341 Oct 13 17:40 HITS.46676269._088294.pool.root.1
[2025-10-13 17:41:42] -rw-r--r--. 1 boinc boinc       529 Oct 13 17:40 boinc_task_state.xml
[2025-10-13 17:41:42] -rw-------. 1 boinc boinc      1018 Oct 13 17:40 memory_monitor_summary.json
[2025-10-13 17:41:42] -rw-------. 1 boinc boinc    304144 Oct 13 17:40 log.46676269._088294.job.log.tgz.1
[2025-10-13 17:41:42] -rw-------. 1 boinc boinc      7753 Oct 13 17:40 heartbeat.json
[2025-10-13 17:41:42] -rw-r--r--. 1 boinc boinc      8192 Oct 13 17:41 boinc_mmap_file
[2025-10-13 17:41:42] -rw-r--r--. 1 boinc boinc        27 Oct 13 17:41 wrapper_checkpoint.txt
[2025-10-13 17:41:42] -rw-------. 1 boinc boinc      4552 Oct 13 17:41 pilotlog.txt
[2025-10-13 17:41:42] -rw-------. 1 boinc boinc    774338 Oct 13 17:41 log.46676269._088294.job.log.1
[2025-10-13 17:41:42] -rw-------. 1 boinc boinc       357 Oct 13 17:41 output.list
[2025-10-13 17:41:42] -rw-r--r--. 1 boinc boinc       620 Oct 13 17:41 runtime_log
[2025-10-13 17:41:42] -rw-------. 1 boinc boinc   1095680 Oct 13 17:41 result.tar.gz
[2025-10-13 17:41:42] -rw-------. 1 boinc boinc       642 Oct 13 17:41 yQTNDm2VHS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8NlNDmAj2mwm.diag
[2025-10-13 17:41:42] -rw-r--r--. 1 boinc boinc      8661 Oct 13 17:41 runtime_log.err
[2025-10-13 17:41:42] -rw-r--r--. 1 boinc boinc     21250 Oct 13 17:41 stderr.txt
[2025-10-13 17:41:42] HITS file was successfully produced:
[2025-10-13 17:41:42] -rw-------. 1 boinc boinc 193316341 Oct 13 17:40 shared/HITS.pool.root.1
[2025-10-13 17:41:42]  *** Contents of shared directory: ***
[2025-10-13 17:41:42] total 407480
[2025-10-13 17:41:42] -rw-r--r--. 2 boinc boinc 222250554 Oct 13 16:12 ATLAS.root_0
[2025-10-13 17:41:42] -rw-r--r--. 2 boinc boinc     15120 Oct 13 16:12 start_atlas.sh
[2025-10-13 17:41:42] -rw-r--r--. 2 boinc boinc    569677 Oct 13 16:12 input.tar.gz
[2025-10-13 17:41:42] -rw-------. 1 boinc boinc 193316341 Oct 13 17:40 HITS.pool.root.1
[2025-10-13 17:41:42] -rw-------. 1 boinc boinc   1095680 Oct 13 17:41 result.tar.gz
17:41:43 (4073662): run_atlas exited; CPU time 29234.308191
17:41:43 (4073662): called boinc_finish(0)

</stderr_txt>
]]>

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