Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:52:44 (31372): wrapper (7.7.26015): starting
19:52:44 (31372): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 19:52:44] Arguments: --nthreads 12
[2025-10-12 19:52:44] Threads: 12
[2025-10-12 19:52:44] Checking for CVMFS
[2025-10-12 19:52:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:52:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:52:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:52:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:52:44] 2.11.2.0 2981 223520 95088 151641 2 57 15286293 20275201 1 130560 1 110151814 99.984 13490477 12510 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 19:52:44] CVMFS is ok
[2025-10-12 19:52:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:52:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:52:44] Further information can be found at the LHC@home message board.
[2025-10-12 19:52:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:52:44] Checking for apptainer binary...
[2025-10-12 19:52:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:52:44] Running /usr/bin/apptainer --version
[2025-10-12 19:52:44] apptainer version 1.3.2-1.el7
[2025-10-12 19:52:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:52:46] c-205-30.aglt2.org
[2025-10-12 19:52:46] apptainer works
[2025-10-12 19:52:46] Set ATHENA_PROC_NUMBER=12
[2025-10-12 19:52:46] Set ATHENA_CORE_NUMBER=12
[2025-10-12 19:52:46] Starting ATLAS job with PandaID=6840714654
[2025-10-12 19:52:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:04:13]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:04:13]  protocol_id=None
[2025-10-12 21:04:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 21:04:13]  replicas=None
[2025-10-12 21:04:13]  scope=mc23_13p6TeV
[2025-10-12 21:04:13]  status=None
[2025-10-12 21:04:13]  status_code=0
[2025-10-12 21:04:13]  storage_token=
[2025-10-12 21:04:13]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840714654/log.46676269._088050.job.log.tgz.1
[2025-10-12 21:04:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/75/93/log.46676269._088050.job.log.tgz.1
[2025-10-12 21:04:13]  workdir=None
[2025-10-12 21:04:13] ]
[2025-10-12 21:04:13] 2025-10-13 01:03:06,545 | INFO     | time since job start (4205s) is within the limit (172800.0s)
[2025-10-12 21:04:13] 2025-10-13 01:03:06,559 | INFO     | transferring file log.46676269._088050.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840714654/log.46676269._088050.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 21:04:13] 2025-10-13 01:03:06,560 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840714654/log.46676269._088050.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._088050.job
[2025-10-12 21:04:13] 2025-10-13 01:03:06,582 | INFO     | adding to output.list: log.46676269._088050.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/75/93/log.46676269._088050.job.log.tg
[2025-10-12 21:04:13] 2025-10-13 01:03:06,583 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 21:04:13] 2025-10-13 01:03:06,583 | INFO     | summary of transferred files:
[2025-10-12 21:04:13] 2025-10-13 01:03:06,583 | INFO     |  -- lfn=log.46676269._088050.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 21:04:13] 2025-10-13 01:03:06,583 | INFO     | stage-out finished correctly
[2025-10-12 21:04:13] 2025-10-13 01:03:06,669 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 21:04:13] 2025-10-13 01:03:06,750 | INFO     | job 6840714654 has state=finished
[2025-10-12 21:04:13] 2025-10-13 01:03:06,750 | INFO     | preparing for final server update for job 6840714654 in state='finished'
[2025-10-12 21:04:13] 2025-10-13 01:03:06,816 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 21:04:13] 2025-10-13 01:03:06,816 | INFO     | this job has now completed (state=finished)
[2025-10-12 21:04:13] 2025-10-13 01:03:06,816 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 21:04:13] 2025-10-13 01:03:06,817 | INFO     | log transfer has been attempted: DONE
[2025-10-12 21:04:13] 2025-10-13 01:03:06,817 | INFO     | job 6840714654 has finished - writing final server update
[2025-10-12 21:04:13] 2025-10-13 01:03:06,817 | INFO     | total number of processed events: 400 (read)
[2025-10-12 21:04:13] 2025-10-13 01:03:06,818 | INFO     | executing command: lscpu
[2025-10-12 21:04:13] 2025-10-13 01:03:06,843 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 21:04:13] 2025-10-13 01:03:07,584 | INFO     | monitor loop #316: job 0:6840714654 is in state 'finished'
[2025-10-12 21:04:13] 2025-10-13 01:03:07,584 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:04:13] 2025-10-13 01:03:08,550 | INFO     | time since job start (4207s) is within the limit (172800.0s)
[2025-10-12 21:04:13] 2025-10-13 01:03:10,087 | INFO     | monitor loop #317: job 0:6840714654 is in state 'finished'
[2025-10-12 21:04:13] 2025-10-13 01:03:10,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:04:13] 2025-10-13 01:03:10,555 | INFO     | time since job start (4209s) is within the limit (172800.0s)
[2025-10-12 21:04:13] 2025-10-13 01:03:11,707 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 21:04:13] 2025-10-13 01:03:11,710 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 21:04:13] 2025-10-13 01:03:11,712 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840714654/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:04:13] 2025-10-13 01:03:11,713 | INFO     | extracted standard info from prmon json
[2025-10-12 21:04:13] 2025-10-13 01:03:11,713 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:04:13] 2025-10-13 01:03:11,714 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:04:13] 2025-10-13 01:03:11,714 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:04:13] 2025-10-13 01:03:11,714 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:04:13] 2025-10-13 01:03:11,716 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:04:13] 2025-10-13 01:03:11,717 | INFO     | sum of square deviations: 73882315.5
[2025-10-12 21:04:13] 2025-10-13 01:03:11,717 | INFO     | sum of deviations: -6222481656.0
[2025-10-12 21:04:13] 2025-10-13 01:03:11,717 | INFO     | mean x: 1760315374.5
[2025-10-12 21:04:13] 2025-10-13 01:03:11,718 | INFO     | mean y: 2760893.0
[2025-10-12 21:04:13] 2025-10-13 01:03:11,718 | INFO     | -- intersect: 148259215126.6389
[2025-10-12 21:04:13] 2025-10-13 01:03:11,718 | INFO     | intersect: 148259215126.6389
[2025-10-12 21:04:13] 2025-10-13 01:03:11,718 | INFO     | chi2: 0.052301471629334115
[2025-10-12 21:04:13] 2025-10-13 01:03:11,719 | INFO     | -- intersect: 148259215126.6389
[2025-10-12 21:04:13] 2025-10-13 01:03:11,719 | INFO     | current memory leak: -84.22 B/s (using 62 data points, chi2=0.05)
[2025-10-12 21:04:13] 2025-10-13 01:03:11,719 | INFO     | could have reported an average CPU frequency of 2045 MHz (6 samples)
[2025-10-12 21:04:13] 2025-10-13 01:03:11,719 | INFO     | ..............................
[2025-10-12 21:04:13] 2025-10-13 01:03:11,720 | INFO     | . Timing measurements:
[2025-10-12 21:04:13] 2025-10-13 01:03:11,720 | INFO     | . get job = 0 s
[2025-10-12 21:04:13] 2025-10-13 01:03:11,720 | INFO     | . initial setup = 2 s
[2025-10-12 21:04:13] 2025-10-13 01:03:11,720 | INFO     | . payload setup = 7 s
[2025-10-12 21:04:13] 2025-10-13 01:03:11,720 | INFO     | . stage-in = 0 s
[2025-10-12 21:04:13] 2025-10-13 01:03:11,720 | INFO     | . payload execution = 4178 s
[2025-10-12 21:04:13] 2025-10-13 01:03:11,720 | INFO     | . stage-out = 0 s
[2025-10-12 21:04:13] 2025-10-13 01:03:11,720 | INFO     | . log creation = 0 s
[2025-10-12 21:04:13] 2025-10-13 01:03:11,721 | INFO     | ..............................
[2025-10-12 21:04:13] 2025-10-13 01:03:11,801 | INFO     | 
[2025-10-12 21:04:13] 2025-10-13 01:03:11,802 | INFO     | job summary report
[2025-10-12 21:04:13] 2025-10-13 01:03:11,802 | INFO     | --------------------------------------------------
[2025-10-12 21:04:13] 2025-10-13 01:03:11,802 | INFO     | PanDA job id: 6840714654
[2025-10-12 21:04:13] 2025-10-13 01:03:11,802 | INFO     | task id: 46676269
[2025-10-12 21:04:13] 2025-10-13 01:03:11,802 | INFO     | errors: (none)
[2025-10-12 21:04:13] 2025-10-13 01:03:11,802 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:04:13] 2025-10-13 01:03:11,802 | INFO     | pilot state: finished 
[2025-10-12 21:04:13] 2025-10-13 01:03:11,803 | INFO     | transexitcode: 0
[2025-10-12 21:04:13] 2025-10-13 01:03:11,803 | INFO     | exeerrorcode: 0
[2025-10-12 21:04:13] 2025-10-13 01:03:11,803 | INFO     | exeerrordiag: 
[2025-10-12 21:04:13] 2025-10-13 01:03:11,803 | INFO     | exitcode: 0
[2025-10-12 21:04:13] 2025-10-13 01:03:11,803 | INFO     | exitmsg: OK
[2025-10-12 21:04:13] 2025-10-13 01:03:11,803 | INFO     | cpuconsumptiontime: 45377 s
[2025-10-12 21:04:13] 2025-10-13 01:03:11,803 | INFO     | nevents: 400
[2025-10-12 21:04:13] 2025-10-13 01:03:11,803 | INFO     | neventsw: 0
[2025-10-12 21:04:13] 2025-10-13 01:03:11,803 | INFO     | pid: 9170
[2025-10-12 21:04:13] 2025-10-13 01:03:11,803 | INFO     | pgrp: 9170
[2025-10-12 21:04:13] 2025-10-13 01:03:11,804 | INFO     | corecount: 12
[2025-10-12 21:04:13] 2025-10-13 01:03:11,804 | INFO     | event service: False
[2025-10-12 21:04:13] 2025-10-13 01:03:11,804 | INFO     | sizes: {0: 2348686, 1: 2348885, 6: 2349147, 12: 2349175, 4189: 2375071, 4190: 2384253, 4195: 2384391}
[2025-10-12 21:04:13] 2025-10-13 01:03:11,804 | INFO     | --------------------------------------------------
[2025-10-12 21:04:13] 2025-10-13 01:03:11,804 | INFO     | 
[2025-10-12 21:04:13] 2025-10-13 01:03:11,804 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 21:04:13] 2025-10-13 01:03:11,827 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,827 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,827 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,827 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,828 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,828 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,828 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,828 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,828 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,829 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,829 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,829 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,829 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,829 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,829 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,830 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,830 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,830 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:04:13] 2025-10-13 01:03:11,830 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,830 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:04:13] 2025-10-13 01:03:11,830 | INFO     | job 6840714654 has completed (purged errors)
[2025-10-12 21:04:13] 2025-10-13 01:03:11,831 | INFO     | overall cleanup function is called
[2025-10-12 21:04:13] 2025-10-13 01:03:12,838 | INFO     | --- collectZombieJob: --- 10, [9170]
[2025-10-12 21:04:13] 2025-10-13 01:03:12,839 | INFO     | zombie collector waiting for pid 9170
[2025-10-12 21:04:13] 2025-10-13 01:03:12,839 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:04:13] 2025-10-13 01:03:12,839 | INFO     | collected zombie processes
[2025-10-12 21:04:13] 2025-10-13 01:03:12,839 | INFO     | will attempt to kill all subprocesses of pid=9170
[2025-10-12 21:04:13] 2025-10-13 01:03:12,931 | INFO     | process IDs to be killed: [9170] (in reverse order)
[2025-10-12 21:04:13] 2025-10-13 01:03:12,978 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:04:13] 2025-10-13 01:03:12,979 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:04:13] 2025-10-13 01:03:12,981 | INFO     | did not find any defunct processes belonging to 9170
[2025-10-12 21:04:13] 2025-10-13 01:03:12,984 | INFO     | did not find any defunct processes belonging to 9170
[2025-10-12 21:04:13] 2025-10-13 01:03:12,984 | INFO     | ready for new job
[2025-10-12 21:04:13] 2025-10-13 01:03:12,984 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:04:13] 2025-10-13 01:03:12,985 | INFO     | ***************************************
[2025-10-12 21:04:13] 2025-10-13 01:03:12,985 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:04:13] 2025-10-13 01:03:12,985 | INFO     | ***************************************
[2025-10-12 21:04:13] 2025-10-13 01:03:12,985 | INFO     | 
[2025-10-12 21:04:13] 2025-10-13 01:03:12,986 | INFO     | architecture information:
[2025-10-12 21:04:13] 2025-10-13 01:03:12,986 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:04:13] 2025-10-13 01:03:13,002 | INFO     | cat /etc/os-release:
[2025-10-12 21:04:13] NAME="CentOS Linux"
[2025-10-12 21:04:13] VERSION="7 (Core)"
[2025-10-12 21:04:13] ID="centos"
[2025-10-12 21:04:13] ID_LIKE="rhel fedora"
[2025-10-12 21:04:13] VERSION_ID="7"
[2025-10-12 21:04:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:04:13] ANSI_COLOR="0;31"
[2025-10-12 21:04:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:04:13] HOME_URL="https://www.centos.org/"
[2025-10-12 21:04:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:04:13] 
[2025-10-12 21:04:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:04:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:04:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:04:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:04:13] 
[2025-10-12 21:04:13] 2025-10-13 01:03:13,002 | INFO     | ***************************************
[2025-10-12 21:04:13] 2025-10-13 01:03:13,505 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 21:04:13] 2025-10-13 01:03:13,523 | INFO     | sufficient remaining disk space (29363273728 B)
[2025-10-12 21:04:13] 2025-10-13 01:03:13,523 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:04:13] 2025-10-13 01:03:13,523 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:04:13] 2025-10-13 01:03:13,524 | INFO     | update_server=False
[2025-10-12 21:04:13] 2025-10-13 01:03:13,524 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:04:13] 2025-10-13 01:03:13,524 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:04:13] 2025-10-13 01:03:13,525 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:04:13] 2025-10-13 01:03:13,595 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:04:13] 2025-10-13 01:03:13,596 | INFO     | aborting loop
[2025-10-12 21:04:13] 2025-10-13 01:03:13,830 | INFO     | all payload control threads have been joined
[2025-10-12 21:04:13] 2025-10-13 01:03:14,448 | INFO     | all data control threads have been joined
[2025-10-12 21:04:13] 2025-10-13 01:03:14,529 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:04:13] 2025-10-13 01:03:14,530 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:04:13] 2025-10-13 01:03:14,601 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:04:13] 2025-10-13 01:03:14,680 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:04:13] 2025-10-13 01:03:14,813 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:04:13] 2025-10-13 01:03:14,835 | INFO     | [payload] control thread has finished
[2025-10-12 21:04:13] 2025-10-13 01:03:14,899 | INFO     | [job] validate thread has finished
[2025-10-12 21:04:13] 2025-10-13 01:03:15,162 | INFO     | all job control threads have been joined
[2025-10-12 21:04:13] 2025-10-13 01:03:15,195 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:04:13] 2025-10-13 01:03:15,341 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:04:13] 2025-10-13 01:03:15,452 | INFO     | [data] control thread has finished
[2025-10-12 21:04:13] 2025-10-13 01:03:15,716 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:04:13] 2025-10-13 01:03:15,735 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:04:13] 2025-10-13 01:03:15,914 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:04:13] 2025-10-13 01:03:16,167 | INFO     | [job] control thread has finished
[2025-10-12 21:04:13] 2025-10-13 01:03:16,685 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:04:13] 2025-10-13 01:03:17,530 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:04:13] 2025-10-13 01:03:23,741 | INFO     | job.realtimelogging is not enabled
[2025-10-12 21:04:13] 2025-10-13 01:03:24,746 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:04:13] 2025-10-13 01:03:43,751 | INFO     | PID=2745 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 21:04:13] 2025-10-13 01:03:43,752 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:04:13] 2025-10-13 01:03:43,752 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:04:13] 2025-10-13 01:03:43,752 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:04:13] 2025-10-13 01:04:07,267 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:04:13] 2025-10-13 01:04:07,977 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139688297137984)>', '<ExcThread(monitor, started 139687997974272)>']
[2025-10-12 21:04:13] 2025-10-13 01:04:08,875 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:04:13] 2025-10-13 01:04:08,875 | INFO     | [monitor] control thread has ended
[2025-10-12 21:04:13] 2025-10-13 01:04:12,981 | INFO     | all workflow threads have been joined
[2025-10-12 21:04:13] 2025-10-13 01:04:12,982 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:04:13] 2025-10-13 01:04:12,985 | INFO     | traces error code: 0
[2025-10-12 21:04:13] 2025-10-13 01:04:12,985 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:04:13] 2025-10-13 01:04:13,088 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:04:13] 2025-10-13 01:04:13,092 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:04:13] 2025-10-13 01:04:13,096 [wrapper] pilotpid: 2745
[2025-10-12 21:04:13] 2025-10-13 01:04:13,099 [wrapper] Pilot exit status: 0
[2025-10-12 21:04:13] 2025-10-13 01:04:13,115 [wrapper] pandaids: 6840714654
[2025-10-12 21:04:13] 2025-10-13 01:04:13,161 [wrapper] cleanup supervisor_pilot 20671 2746
[2025-10-12 21:04:13] 2025-10-13 01:04:13,165 [wrapper] Test setup, not cleaning
[2025-10-12 21:04:13] 2025-10-13 01:04:13,169 [wrapper] apfmon messages muted
[2025-10-12 21:04:13] 2025-10-13 01:04:13,172 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:04:13] 2025-10-13 01:04:13,176 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:04:13]  *** Error codes and diagnostics ***
[2025-10-12 21:04:13]     "exeErrorCode": 0,
[2025-10-12 21:04:13]     "exeErrorDiag": "",
[2025-10-12 21:04:13]     "pilotErrorCode": 0,
[2025-10-12 21:04:13]     "pilotErrorDiag": "",
[2025-10-12 21:04:13]  *** Listing of results directory ***
[2025-10-12 21:04:13] total 411840
[2025-10-12 21:04:13] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 15:50 pilot3.tar.gz
[2025-10-12 21:04:13] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 15:57 queuedata.json
[2025-10-12 21:04:13] -rwx------ 1 boincer umatlas     36292 Oct 12 15:57 runpilot2-wrapper.sh
[2025-10-12 21:04:13] -rw-r--r-- 1 boincer umatlas       100 Oct 12 19:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:04:13] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 19:52 run_atlas
[2025-10-12 21:04:13] -rw-r--r-- 1 boincer umatlas       105 Oct 12 19:52 job.xml
[2025-10-12 21:04:13] -rw-r--r-- 2 boincer umatlas 222733247 Oct 12 19:52 EVNT.46676267._004476.pool.root.1
[2025-10-12 21:04:13] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 19:52 start_atlas.sh
[2025-10-12 21:04:13] drwxrwx--x 2 boincer umatlas      4096 Oct 12 19:52 shared
[2025-10-12 21:04:13] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 19:52 input.tar.gz
[2025-10-12 21:04:13] -rw-r--r-- 1 boincer umatlas         0 Oct 12 19:52 boinc_lockfile
[2025-10-12 21:04:13] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 19:52 pandaJob.out
[2025-10-12 21:04:13] -rw------- 1 boincer umatlas    975603 Oct 12 19:52 agis_schedconf.cvmfs.json
[2025-10-12 21:04:13] -rw------- 1 boincer umatlas   1560580 Oct 12 19:52 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:04:13] drwx------ 5 boincer umatlas      4096 Oct 12 19:53 pilot3
[2025-10-12 21:04:13] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 21:00 init_data.xml
[2025-10-12 21:04:13] -rw------- 1 boincer umatlas 193077652 Oct 12 21:02 HITS.46676269._088050.pool.root.1
[2025-10-12 21:04:13] -rw-r--r-- 1 boincer umatlas       529 Oct 12 21:02 boinc_task_state.xml
[2025-10-12 21:04:13] -rw------- 1 boincer umatlas        95 Oct 12 21:02 pilot_heartbeat.json
[2025-10-12 21:04:13] -rw------- 1 boincer umatlas      1062 Oct 12 21:03 memory_monitor_summary.json
[2025-10-12 21:04:13] -rw------- 1 boincer umatlas    389082 Oct 12 21:03 log.46676269._088050.job.log.tgz.1
[2025-10-12 21:04:13] -rw------- 1 boincer umatlas      7857 Oct 12 21:03 heartbeat.json
[2025-10-12 21:04:13] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 21:04 boinc_mmap_file
[2025-10-12 21:04:13] -rw-r--r-- 1 boincer umatlas        27 Oct 12 21:04 wrapper_checkpoint.txt
[2025-10-12 21:04:13] -rw------- 1 boincer umatlas      4817 Oct 12 21:04 pilotlog.txt
[2025-10-12 21:04:13] -rw------- 1 boincer umatlas    615429 Oct 12 21:04 log.46676269._088050.job.log.1
[2025-10-12 21:04:13] -rw------- 1 boincer umatlas       357 Oct 12 21:04 output.list
[2025-10-12 21:04:13] -rw-r--r-- 1 boincer umatlas       620 Oct 12 21:04 runtime_log
[2025-10-12 21:04:13] -rw------- 1 boincer umatlas   1024000 Oct 12 21:04 result.tar.gz
[2025-10-12 21:04:13] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 21:04 runtime_log.err
[2025-10-12 21:04:13] -rw------- 1 boincer umatlas       659 Oct 12 21:04 dH5KDmwMHS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmPtUMDmjZnfam.diag
[2025-10-12 21:04:13] -rw-r--r-- 1 boincer umatlas     21717 Oct 12 21:04 stderr.txt
[2025-10-12 21:04:13] HITS file was successfully produced:
[2025-10-12 21:04:13] -rw------- 1 boincer umatlas 193077652 Oct 12 21:02 shared/HITS.pool.root.1
[2025-10-12 21:04:13]  *** Contents of shared directory: ***
[2025-10-12 21:04:13] total 407652
[2025-10-12 21:04:13] -rw-r--r-- 2 boincer umatlas 222733247 Oct 12 19:52 ATLAS.root_0
[2025-10-12 21:04:13] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 19:52 start_atlas.sh
[2025-10-12 21:04:13] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 19:52 input.tar.gz
[2025-10-12 21:04:13] -rw------- 1 boincer umatlas 193077652 Oct 12 21:02 HITS.pool.root.1
[2025-10-12 21:04:13] -rw------- 1 boincer umatlas   1024000 Oct 12 21:04 result.tar.gz
21:04:15 (31372): run_atlas exited; CPU time 45345.657001
21:04:15 (31372): called boinc_finish(0)

</stderr_txt>
]]>

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