Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:22:10 (1352660): wrapper (7.7.26015): starting
20:22:10 (1352660): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 20:22:10] Arguments: --nthreads 8
[2025-10-12 20:22:10] Threads: 8
[2025-10-12 20:22:10] Checking for CVMFS
[2025-10-12 20:22:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:22:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:22:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:22:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:22:12] 2.13.2.0 5032 6393 150268 151642 2 56 27138597 40960000 34173 16776704 0 29139303 99.742 18494808 27556 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 20:22:12] CVMFS is ok
[2025-10-12 20:22:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:22:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:22:12] Further information can be found at the LHC@home message board.
[2025-10-12 20:22:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:22:12] Checking for apptainer binary...
[2025-10-12 20:22:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:22:12] Running /usr/bin/apptainer --version
[2025-10-12 20:22:12] apptainer version 1.4.3-1.el9
[2025-10-12 20:22:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:22:12] c-212-10.aglt2.org
[2025-10-12 20:22:12] apptainer works
[2025-10-12 20:22:12] Set ATHENA_PROC_NUMBER=8
[2025-10-12 20:22:12] Set ATHENA_CORE_NUMBER=8
[2025-10-12 20:22:12] Starting ATLAS job with PandaID=6840713457
[2025-10-12 20:22:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:12:00]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:12:00] 2025-10-13 07:11:17,362 | INFO     | sum of deviations: -35665575374.66501
[2025-10-13 03:12:00] 2025-10-13 07:11:17,362 | INFO     | mean x: 1760327233.145
[2025-10-13 03:12:00] 2025-10-13 07:11:17,362 | INFO     | mean y: 2506295.9425
[2025-10-13 03:12:00] 2025-10-13 07:11:17,402 | INFO     | -- intersect: 3165981146.592308
[2025-10-13 03:12:00] 2025-10-13 07:11:17,403 | INFO     | intersect: 3165981146.592308
[2025-10-13 03:12:00] 2025-10-13 07:11:17,404 | INFO     | chi2: 2.699673659858515
[2025-10-13 03:12:00] 2025-10-13 07:11:17,404 | INFO     | sum of square deviations: 19111384767.483555
[2025-10-13 03:12:00] 2025-10-13 07:11:17,497 | INFO     | sum of deviations: -10636161121.405085
[2025-10-13 03:12:00] 2025-10-13 07:11:17,497 | INFO     | mean x: 1760327080.6531646
[2025-10-13 03:12:00] 2025-10-13 07:11:17,497 | INFO     | mean y: 2511437.924050633
[2025-10-13 03:12:00] 2025-10-13 07:11:17,497 | INFO     | -- intersect: 982195677.6582404
[2025-10-13 03:12:00] 2025-10-13 07:11:17,498 | INFO     | intersect: 982195677.6582404
[2025-10-13 03:12:00] 2025-10-13 07:11:17,498 | INFO     | chi2: 2.0125006498176035
[2025-10-13 03:12:00] 2025-10-13 07:11:17,498 | INFO     | current chi2=2.0125006498176035 (change=25.45392875659368 %)
[2025-10-13 03:12:00] 2025-10-13 07:11:17,498 | INFO     | sum of square deviations: 18394852871.458874
[2025-10-13 03:12:00] 2025-10-13 07:11:17,576 | INFO     | sum of deviations: -10319924625.920517
[2025-10-13 03:12:00] 2025-10-13 07:11:17,576 | INFO     | mean x: 1760326928.1564102
[2025-10-13 03:12:00] 2025-10-13 07:11:17,577 | INFO     | mean y: 2511505.228205128
[2025-10-13 03:12:00] 2025-10-13 07:11:17,577 | INFO     | -- intersect: 990094354.7621136
[2025-10-13 03:12:00] 2025-10-13 07:11:17,577 | INFO     | intersect: 990094354.7621136
[2025-10-13 03:12:00] 2025-10-13 07:11:17,657 | INFO     | chi2: 2.0124437599718714
[2025-10-13 03:12:00] 2025-10-13 07:11:17,657 | INFO     | current chi2=2.0124437599718714 (change=0.00282682371989298 %)
[2025-10-13 03:12:00] 2025-10-13 07:11:17,657 | INFO     | right removable region: 389
[2025-10-13 03:12:00] 2025-10-13 07:11:17,658 | INFO     | sum of square deviations: 19111227387.483555
[2025-10-13 03:12:00] 2025-10-13 07:11:17,694 | INFO     | sum of deviations: -109880186403.84296
[2025-10-13 03:12:00] 2025-10-13 07:11:17,695 | INFO     | mean x: 1760327385.6531646
[2025-10-13 03:12:00] 2025-10-13 07:11:17,695 | INFO     | mean y: 2521617.1544303796
[2025-10-13 03:12:00] 2025-10-13 07:11:17,695 | INFO     | -- intersect: 10123540918.826204
[2025-10-13 03:12:00] 2025-10-13 07:11:17,695 | INFO     | intersect: 10123540918.826204
[2025-10-13 03:12:00] 2025-10-13 07:11:17,695 | INFO     | chi2: 0.8522932623065489
[2025-10-13 03:12:00] 2025-10-13 07:11:17,695 | INFO     | current chi2=0.8522932623065489 (change=68.42976708706281 %)
[2025-10-13 03:12:00] 2025-10-13 07:11:17,696 | INFO     | sum of square deviations: 18394634491.458874
[2025-10-13 03:12:00] 2025-10-13 07:11:17,749 | INFO     | sum of deviations: -107813365900.44093
[2025-10-13 03:12:00] 2025-10-13 07:11:17,750 | INFO     | mean x: 1760327538.1564102
[2025-10-13 03:12:00] 2025-10-13 07:11:17,750 | INFO     | mean y: 2521172.0564102563
[2025-10-13 03:12:00] 2025-10-13 07:11:17,750 | INFO     | -- intersect: 10320031806.149336
[2025-10-13 03:12:00] 2025-10-13 07:11:17,750 | INFO     | intersect: 10320031806.149336
[2025-10-13 03:12:00] 2025-10-13 07:11:17,750 | INFO     | chi2: 0.845819085724694
[2025-10-13 03:12:00] 2025-10-13 07:11:17,751 | INFO     | current chi2=0.845819085724694 (change=0.7596184163575253 %)
[2025-10-13 03:12:00] 2025-10-13 07:11:17,751 | INFO     | left removable region: 20
[2025-10-13 03:12:00] 2025-10-13 07:11:17,809 | INFO     | sum of square deviations: 15580421107.159973
[2025-10-13 03:12:00] 2025-10-13 07:11:17,813 | INFO     | sum of deviations: -65727065243.8103
[2025-10-13 03:12:00] 2025-10-13 07:11:17,813 | INFO     | mean x: 1760327507.6883469
[2025-10-13 03:12:00] 2025-10-13 07:11:17,852 | INFO     | mean y: 2523359.3929539295
[2025-10-13 03:12:00] 2025-10-13 07:11:17,853 | INFO     | -- intersect: 7428584577.67001
[2025-10-13 03:12:00] 2025-10-13 07:11:17,853 | INFO     | intersect: 7428584577.67001
[2025-10-13 03:12:00] 2025-10-13 07:11:17,853 | INFO     | chi2: 0.13339405881655741
[2025-10-13 03:12:00] 2025-10-13 07:11:17,853 | INFO     | -- intersect: 7428584577.67001
[2025-10-13 03:12:00] 2025-10-13 07:11:17,854 | INFO     | current memory leak: -4.22 B/s (using 369 data points, chi2=0.13)
[2025-10-13 03:12:00] 2025-10-13 07:11:17,854 | INFO     | could have reported an average CPU frequency of 2984 MHz (17 samples)
[2025-10-13 03:12:00] 2025-10-13 07:11:17,855 | INFO     | ..............................
[2025-10-13 03:12:00] 2025-10-13 07:11:17,855 | INFO     | . Timing measurements:
[2025-10-13 03:12:00] 2025-10-13 07:11:17,855 | INFO     | . get job = 0 s
[2025-10-13 03:12:00] 2025-10-13 07:11:17,855 | INFO     | . initial setup = 7 s
[2025-10-13 03:12:00] 2025-10-13 07:11:17,855 | INFO     | . payload setup = 28 s
[2025-10-13 03:12:00] 2025-10-13 07:11:17,855 | INFO     | . stage-in = 0 s
[2025-10-13 03:12:00] 2025-10-13 07:11:17,855 | INFO     | . payload execution = 24388 s
[2025-10-13 03:12:00] 2025-10-13 07:11:17,855 | INFO     | . stage-out = 7 s
[2025-10-13 03:12:00] 2025-10-13 07:11:17,855 | INFO     | . log creation = 1 s
[2025-10-13 03:12:00] 2025-10-13 07:11:17,855 | INFO     | ..............................
[2025-10-13 03:12:00] 2025-10-13 07:11:18,484 | INFO     | 
[2025-10-13 03:12:00] 2025-10-13 07:11:18,485 | INFO     | job summary report
[2025-10-13 03:12:00] 2025-10-13 07:11:18,485 | INFO     | --------------------------------------------------
[2025-10-13 03:12:00] 2025-10-13 07:11:18,485 | INFO     | PanDA job id: 6840713457
[2025-10-13 03:12:00] 2025-10-13 07:11:18,485 | INFO     | task id: 46676269
[2025-10-13 03:12:00] 2025-10-13 07:11:18,485 | INFO     | errors: (none)
[2025-10-13 03:12:00] 2025-10-13 07:11:18,485 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 03:12:00] 2025-10-13 07:11:18,485 | INFO     | pilot state: finished 
[2025-10-13 03:12:00] 2025-10-13 07:11:18,491 | INFO     | transexitcode: 0
[2025-10-13 03:12:00] 2025-10-13 07:11:18,492 | INFO     | exeerrorcode: 0
[2025-10-13 03:12:00] 2025-10-13 07:11:18,492 | INFO     | exeerrordiag: 
[2025-10-13 03:12:00] 2025-10-13 07:11:18,492 | INFO     | exitcode: 0
[2025-10-13 03:12:00] 2025-10-13 07:11:18,492 | INFO     | exitmsg: OK
[2025-10-13 03:12:00] 2025-10-13 07:11:18,492 | INFO     | cpuconsumptiontime: 39496 s
[2025-10-13 03:12:00] 2025-10-13 07:11:18,492 | INFO     | nevents: 400
[2025-10-13 03:12:00] 2025-10-13 07:11:18,492 | INFO     | neventsw: 0
[2025-10-13 03:12:00] 2025-10-13 07:11:18,492 | INFO     | pid: 1363918
[2025-10-13 03:12:00] 2025-10-13 07:11:18,492 | INFO     | pgrp: 1363918
[2025-10-13 03:12:00] 2025-10-13 07:11:18,492 | INFO     | corecount: 8
[2025-10-13 03:12:00] 2025-10-13 07:11:18,492 | INFO     | event service: False
[2025-10-13 03:12:00] 2025-10-13 07:11:18,492 | INFO     | sizes: {0: 2348029, 1: 2348714, 2: 2348913, 13: 2348913, 20: 2349231, 24: 2349259, 24422: 2384443, 24432: 2393441, 24435: 2393497, 24458: 2393755}
[2025-10-13 03:12:00] 2025-10-13 07:11:18,492 | INFO     | --------------------------------------------------
[2025-10-13 03:12:00] 2025-10-13 07:11:18,493 | INFO     | 
[2025-10-13 03:12:00] 2025-10-13 07:11:18,493 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-13 03:12:00] 2025-10-13 07:11:18,869 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,869 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,869 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,869 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,869 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,870 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,870 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,870 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,870 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,870 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,870 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,870 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,870 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,870 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,870 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,870 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,870 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,870 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 03:12:00] 2025-10-13 07:11:18,870 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,871 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 03:12:00] 2025-10-13 07:11:18,871 | INFO     | job 6840713457 has completed (purged errors)
[2025-10-13 03:12:00] 2025-10-13 07:11:18,871 | INFO     | overall cleanup function is called
[2025-10-13 03:12:00] 2025-10-13 07:11:19,921 | INFO     | --- collectZombieJob: --- 10, [1363918]
[2025-10-13 03:12:00] 2025-10-13 07:11:19,921 | INFO     | zombie collector waiting for pid 1363918
[2025-10-13 03:12:00] 2025-10-13 07:11:19,922 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 03:12:00] 2025-10-13 07:11:19,922 | INFO     | collected zombie processes
[2025-10-13 03:12:00] 2025-10-13 07:11:19,922 | INFO     | will attempt to kill all subprocesses of pid=1363918
[2025-10-13 03:12:00] 2025-10-13 07:11:20,038 | INFO     | PID=1356527 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 03:12:00] 2025-10-13 07:11:20,038 | INFO     | .. there are 38 such processes running
[2025-10-13 03:12:00] 2025-10-13 07:11:21,798 | INFO     | process IDs to be killed: [1363918] (in reverse order)
[2025-10-13 03:12:00] 2025-10-13 07:11:22,467 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:12:00] 2025-10-13 07:11:22,467 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:12:00] 2025-10-13 07:11:22,554 | INFO     | did not find any defunct processes belonging to 1363918
[2025-10-13 03:12:00] 2025-10-13 07:11:22,655 | INFO     | did not find any defunct processes belonging to 1363918
[2025-10-13 03:12:00] 2025-10-13 07:11:22,656 | INFO     | ready for new job
[2025-10-13 03:12:00] 2025-10-13 07:11:22,656 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:12:00] 2025-10-13 07:11:22,678 | INFO     | ***************************************
[2025-10-13 03:12:00] 2025-10-13 07:11:22,679 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:12:00] 2025-10-13 07:11:22,679 | INFO     | ***************************************
[2025-10-13 03:12:00] 2025-10-13 07:11:22,679 | INFO     | 
[2025-10-13 03:12:00] 2025-10-13 07:11:22,727 | INFO     | architecture information:
[2025-10-13 03:12:00] 2025-10-13 07:11:22,736 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:12:00] 2025-10-13 07:11:23,055 | INFO     | cat /etc/os-release:
[2025-10-13 03:12:00] NAME="CentOS Linux"
[2025-10-13 03:12:00] VERSION="7 (Core)"
[2025-10-13 03:12:00] ID="centos"
[2025-10-13 03:12:00] ID_LIKE="rhel fedora"
[2025-10-13 03:12:00] VERSION_ID="7"
[2025-10-13 03:12:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:12:00] ANSI_COLOR="0;31"
[2025-10-13 03:12:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:12:00] HOME_URL="https://www.centos.org/"
[2025-10-13 03:12:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:12:00] 
[2025-10-13 03:12:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:12:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:12:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:12:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:12:00] 
[2025-10-13 03:12:00] 2025-10-13 07:11:23,055 | INFO     | ***************************************
[2025-10-13 03:12:00] 2025-10-13 07:11:23,577 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-13 03:12:00] 2025-10-13 07:11:23,670 | INFO     | sufficient remaining disk space (127372623872 B)
[2025-10-13 03:12:00] 2025-10-13 07:11:23,670 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:12:00] 2025-10-13 07:11:23,670 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:12:00] 2025-10-13 07:11:23,671 | INFO     | update_server=False
[2025-10-13 03:12:00] 2025-10-13 07:11:23,671 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:12:00] 2025-10-13 07:11:23,671 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:12:00] 2025-10-13 07:11:23,673 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:12:00] 2025-10-13 07:11:23,675 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:12:00] 2025-10-13 07:11:23,765 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 03:12:00] 2025-10-13 07:11:23,766 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 03:12:00] 2025-10-13 07:11:23,766 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:12:00] 2025-10-13 07:11:23,766 | INFO     | will abort loop
[2025-10-13 03:12:00] 2025-10-13 07:11:24,175 | INFO     | all data control threads have been joined
[2025-10-13 03:12:00] 2025-10-13 07:11:24,247 | INFO     | all job control threads have been joined
[2025-10-13 03:12:00] 2025-10-13 07:11:24,676 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:12:00] 2025-10-13 07:11:24,679 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:12:00] 2025-10-13 07:11:24,752 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:12:00] 2025-10-13 07:11:24,773 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:12:00] 2025-10-13 07:11:25,085 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:12:00] 2025-10-13 07:11:25,156 | INFO     | all payload control threads have been joined
[2025-10-13 03:12:00] 2025-10-13 07:11:25,184 | INFO     | [data] control thread has finished
[2025-10-13 03:12:00] 2025-10-13 07:11:25,254 | INFO     | [job] control thread has finished
[2025-10-13 03:12:00] 2025-10-13 07:11:25,638 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:12:00] 2025-10-13 07:11:25,691 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:12:00] 2025-10-13 07:11:25,845 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:12:00] 2025-10-13 07:11:25,868 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:12:00] 2025-10-13 07:11:25,870 | INFO     | [job] validate thread has finished
[2025-10-13 03:12:00] 2025-10-13 07:11:25,871 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:12:00] 2025-10-13 07:11:26,162 | INFO     | [payload] control thread has finished
[2025-10-13 03:12:00] 2025-10-13 07:11:26,174 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:12:00] 2025-10-13 07:11:27,681 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:12:00] 2025-10-13 07:11:40,671 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:12:00] 2025-10-13 07:11:40,976 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140717071914816)>', '<ExcThread(monitor, started 140716189665024)>']
[2025-10-13 03:12:00] 2025-10-13 07:11:46,038 | INFO     | all workflow threads have been joined
[2025-10-13 03:12:00] 2025-10-13 07:11:46,047 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:12:00] 2025-10-13 07:11:46,048 | INFO     | traces error code: 0
[2025-10-13 03:12:00] 2025-10-13 07:11:46,048 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:12:00] 2025-10-13 07:11:56,945 | INFO     | PID=1356527 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 03:12:00] 2025-10-13 07:11:56,945 | INFO     | .. there are 38 such processes running
[2025-10-13 03:12:00] 2025-10-13 07:11:56,946 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:12:00] 2025-10-13 07:11:56,946 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:12:00] 2025-10-13 07:11:56,946 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:12:00] 2025-10-13 07:11:56,946 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:12:00] 2025-10-13 07:11:56,946 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 03:12:00] 2025-10-13 07:11:56,946 | INFO     | [monitor] control thread has ended
[2025-10-13 03:12:00] 2025-10-13 07:11:59,751 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:12:00] 2025-10-13 07:11:59,809 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:12:00] 2025-10-13 07:11:59,908 [wrapper] pilotpid: 1356527
[2025-10-13 03:12:00] 2025-10-13 07:11:59,920 [wrapper] Pilot exit status: 0
[2025-10-13 03:12:00] 2025-10-13 07:12:00,157 [wrapper] pandaids: 6840713457
[2025-10-13 03:12:00] 2025-10-13 07:12:00,474 [wrapper] cleanup supervisor_pilot 2925570 1356528
[2025-10-13 03:12:00] 2025-10-13 07:12:00,497 [wrapper] Test setup, not cleaning
[2025-10-13 03:12:00] 2025-10-13 07:12:00,505 [wrapper] apfmon messages muted
[2025-10-13 03:12:00] 2025-10-13 07:12:00,508 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:12:00] 2025-10-13 07:12:00,511 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:12:00]  *** Error codes and diagnostics ***
[2025-10-13 03:12:00]     "exeErrorCode": 0,
[2025-10-13 03:12:00]     "exeErrorDiag": "",
[2025-10-13 03:12:00]     "pilotErrorCode": 0,
[2025-10-13 03:12:00]     "pilotErrorDiag": "",
[2025-10-13 03:12:00]  *** Listing of results directory ***
[2025-10-13 03:12:00] total 420552
[2025-10-13 03:12:00] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 15:28 pilot3.tar.gz
[2025-10-13 03:12:00] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 15:45 queuedata.json
[2025-10-13 03:12:00] -rwx------. 1 boincer umatlas     36292 Oct 12 15:45 runpilot2-wrapper.sh
[2025-10-13 03:12:00] -rw-r--r--. 1 boincer umatlas       100 Oct 12 20:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:12:00] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 20:22 run_atlas
[2025-10-13 03:12:00] -rw-r--r--. 1 boincer umatlas       105 Oct 12 20:22 job.xml
[2025-10-13 03:12:00] -rw-r--r--. 2 boincer umatlas 224317575 Oct 12 20:22 EVNT.46676267._004465.pool.root.1
[2025-10-13 03:12:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 20:22 start_atlas.sh
[2025-10-13 03:12:00] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 20:22 shared
[2025-10-13 03:12:00] -rw-r--r--. 2 boincer umatlas    569680 Oct 12 20:22 input.tar.gz
[2025-10-13 03:12:00] -rw-r--r--. 1 boincer umatlas         0 Oct 12 20:22 boinc_lockfile
[2025-10-13 03:12:00] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 20:22 pandaJob.out
[2025-10-13 03:12:00] -rw-------. 1 boincer umatlas    975603 Oct 12 20:22 agis_schedconf.cvmfs.json
[2025-10-13 03:12:00] drwx------. 5 boincer umatlas      4096 Oct 12 20:22 pilot3
[2025-10-13 03:12:00] -rw-------. 1 boincer umatlas 195271394 Oct 13 03:08 HITS.46676269._087779.pool.root.1
[2025-10-13 03:12:00] -rw-r--r--. 1 boincer umatlas       531 Oct 13 03:09 boinc_task_state.xml
[2025-10-13 03:12:00] -rw-------. 1 boincer umatlas      1049 Oct 13 03:10 memory_monitor_summary.json
[2025-10-13 03:12:00] -rw-------. 1 boincer umatlas   1560580 Oct 13 03:10 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:12:00] -rw-------. 1 boincer umatlas    592795 Oct 13 03:10 log.46676269._087779.job.log.tgz.1
[2025-10-13 03:12:00] -rw-------. 1 boincer umatlas      7801 Oct 13 03:11 heartbeat.json
[2025-10-13 03:12:00] -rw-------. 1 boincer umatlas        95 Oct 13 03:11 pilot_heartbeat.json
[2025-10-13 03:12:00] -rw-------. 1 boincer umatlas       893 Oct 13 03:11 pilotlog.txt
[2025-10-13 03:12:00] -rw-r--r--. 1 boincer umatlas      6945 Oct 13 03:11 init_data.xml
[2025-10-13 03:12:00] -rw-------. 1 boincer umatlas   2983823 Oct 13 03:12 log.46676269._087779.job.log.1
[2025-10-13 03:12:00] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 03:12 boinc_mmap_file
[2025-10-13 03:12:00] -rw-------. 1 boincer umatlas       357 Oct 13 03:12 output.list
[2025-10-13 03:12:00] -rw-r--r--. 1 boincer umatlas        28 Oct 13 03:12 wrapper_checkpoint.txt
[2025-10-13 03:12:00] -rw-r--r--. 1 boincer umatlas       620 Oct 13 03:12 runtime_log
[2025-10-13 03:12:00] -rw-------. 1 boincer umatlas   3594240 Oct 13 03:12 result.tar.gz
[2025-10-13 03:12:00] -rw-r--r--. 1 boincer umatlas      8704 Oct 13 03:12 runtime_log.err
[2025-10-13 03:12:00] -rw-------. 1 boincer umatlas       662 Oct 13 03:12 7b2NDmmBHS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmLrUMDm74sxZn.diag
[2025-10-13 03:12:00] -rw-r--r--. 1 boincer umatlas     21152 Oct 13 03:12 stderr.txt
[2025-10-13 03:12:00] HITS file was successfully produced:
[2025-10-13 03:12:00] -rw-------. 1 boincer umatlas 195271394 Oct 13 03:08 shared/HITS.pool.root.1
[2025-10-13 03:12:00]  *** Contents of shared directory: ***
[2025-10-13 03:12:00] total 413856
[2025-10-13 03:12:00] -rw-r--r--. 2 boincer umatlas 224317575 Oct 12 20:22 ATLAS.root_0
[2025-10-13 03:12:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 20:22 start_atlas.sh
[2025-10-13 03:12:00] -rw-r--r--. 2 boincer umatlas    569680 Oct 12 20:22 input.tar.gz
[2025-10-13 03:12:00] -rw-------. 1 boincer umatlas 195271394 Oct 13 03:08 HITS.pool.root.1
[2025-10-13 03:12:00] -rw-------. 1 boincer umatlas   3594240 Oct 13 03:12 result.tar.gz
03:12:02 (1352660): run_atlas exited; CPU time 40395.687191
03:12:02 (1352660): called boinc_finish(0)

</stderr_txt>
]]>

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