Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:13:21 (3878572): wrapper (7.7.26015): starting
11:13:21 (3878572): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 11:13:21] Arguments: --nthreads 4
[2025-10-13 11:13:21] Threads: 4
[2025-10-13 11:13:21] Checking for CVMFS
[2025-10-13 11:13:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 11:13:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 11:13:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 11:13:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 11:13:23] 2.9.2.0 1695166 5576 95120 151654 2 57 28167799 36864000 0 130560 0 5709930 99.993 185918 769 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 11:13:23] CVMFS is ok
[2025-10-13 11:13:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 11:13:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 11:13:23] Further information can be found at the LHC@home message board.
[2025-10-13 11:13:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 11:13:23] Checking for apptainer binary...
[2025-10-13 11:13:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 11:13:23] Running /usr/bin/apptainer --version
[2025-10-13 11:13:23] apptainer version 1.4.1-1.1
[2025-10-13 11:13:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 11:13:23] magicA244a
[2025-10-13 11:13:23] apptainer works
[2025-10-13 11:13:23] Set ATHENA_PROC_NUMBER=4
[2025-10-13 11:13:23] Set ATHENA_CORE_NUMBER=4
[2025-10-13 11:13:23] Starting ATLAS job with PandaID=6840712859
[2025-10-13 11:13:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 12:18:38]  *** The last 200 lines of the pilot log: ***
[2025-10-13 12:18:38] 2025-10-13 10:17:51,176 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 12:18:38] 2025-10-13 10:17:51,176 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 12:18:38] 2025-10-13 10:17:51,176 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 12:18:38] 2025-10-13 10:17:51,176 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 12:18:38] 2025-10-13 10:17:51,176 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 12:18:38] 2025-10-13 10:17:51,176 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 12:18:38] 2025-10-13 10:17:51,176 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 12:18:38] 2025-10-13 10:17:51,176 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 12:18:38] 2025-10-13 10:17:51,176 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 12:18:38] 2025-10-13 10:17:51,176 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 12:18:38] 2025-10-13 10:17:51,176 | INFO     | job 6840712859 has completed (purged errors)
[2025-10-13 12:18:38] 2025-10-13 10:17:51,176 | INFO     | overall cleanup function is called
[2025-10-13 12:18:38] 2025-10-13 10:17:51,212 | INFO     | number of running child processes to parent process 3888912: 1
[2025-10-13 12:18:38] 2025-10-13 10:17:51,212 | INFO     | maximum number of monitored processes: 6
[2025-10-13 12:18:38] 2025-10-13 10:17:51,212 | INFO     | aborting job monitoring since job object (job id=6840712859) has expired
[2025-10-13 12:18:38] 2025-10-13 10:17:52,183 | INFO     | --- collectZombieJob: --- 10, [3888912]
[2025-10-13 12:18:38] 2025-10-13 10:17:52,184 | INFO     | zombie collector waiting for pid 3888912
[2025-10-13 12:18:38] 2025-10-13 10:17:52,184 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 12:18:38] 2025-10-13 10:17:52,184 | INFO     | collected zombie processes
[2025-10-13 12:18:38] 2025-10-13 10:17:52,184 | INFO     | will attempt to kill all subprocesses of pid=3888912
[2025-10-13 12:18:38] 2025-10-13 10:17:52,229 | INFO     | process IDs to be killed: [3888912] (in reverse order)
[2025-10-13 12:18:38] 2025-10-13 10:17:52,256 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 12:18:38] 2025-10-13 10:17:52,257 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 12:18:38] 2025-10-13 10:17:52,258 | INFO     | did not find any defunct processes belonging to 3888912
[2025-10-13 12:18:38] 2025-10-13 10:17:52,259 | INFO     | did not find any defunct processes belonging to 3888912
[2025-10-13 12:18:38] 2025-10-13 10:17:52,259 | INFO     | ready for new job
[2025-10-13 12:18:38] 2025-10-13 10:17:52,259 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 12:18:38] 2025-10-13 10:17:52,260 | INFO     | ***************************************
[2025-10-13 12:18:38] 2025-10-13 10:17:52,260 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 12:18:38] 2025-10-13 10:17:52,260 | INFO     | ***************************************
[2025-10-13 12:18:38] 2025-10-13 10:17:52,260 | INFO     | 
[2025-10-13 12:18:38] 2025-10-13 10:17:52,260 | INFO     | architecture information:
[2025-10-13 12:18:38] 2025-10-13 10:17:52,260 | INFO     | executing command: cat /etc/os-release
[2025-10-13 12:18:38] 2025-10-13 10:17:52,270 | INFO     | cat /etc/os-release:
[2025-10-13 12:18:38] NAME="CentOS Linux"
[2025-10-13 12:18:38] VERSION="7 (Core)"
[2025-10-13 12:18:38] ID="centos"
[2025-10-13 12:18:38] ID_LIKE="rhel fedora"
[2025-10-13 12:18:38] VERSION_ID="7"
[2025-10-13 12:18:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 12:18:38] ANSI_COLOR="0;31"
[2025-10-13 12:18:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 12:18:38] HOME_URL="https://www.centos.org/"
[2025-10-13 12:18:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 12:18:38] 
[2025-10-13 12:18:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 12:18:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 12:18:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 12:18:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 12:18:38] 
[2025-10-13 12:18:38] 2025-10-13 10:17:52,270 | INFO     | ***************************************
[2025-10-13 12:18:38] 2025-10-13 10:17:52,773 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 12:18:38] 2025-10-13 10:17:52,786 | INFO     | sufficient remaining disk space (331244109824 B)
[2025-10-13 12:18:38] 2025-10-13 10:17:52,786 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 12:18:38] 2025-10-13 10:17:52,786 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 12:18:38] 2025-10-13 10:17:52,786 | INFO     | update_server=False
[2025-10-13 12:18:38] 2025-10-13 10:17:52,786 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 12:18:38] 2025-10-13 10:17:52,786 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 12:18:38] 2025-10-13 10:17:52,787 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:18:38] 2025-10-13 10:17:52,787 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:18:38] 2025-10-13 10:17:52,787 | INFO     | aborting loop
[2025-10-13 12:18:38] 2025-10-13 10:17:52,967 | INFO     | all payload control threads have been joined
[2025-10-13 12:18:38] 2025-10-13 10:17:53,309 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 12:18:38] 2025-10-13 10:17:53,483 | INFO     | all data control threads have been joined
[2025-10-13 12:18:38] 2025-10-13 10:17:53,486 | INFO     | all job control threads have been joined
[2025-10-13 12:18:38] 2025-10-13 10:17:53,792 | INFO     | [job] retrieve thread has finished
[2025-10-13 12:18:38] 2025-10-13 10:17:53,792 | INFO     | [job] queue monitor thread has finished
[2025-10-13 12:18:38] 2025-10-13 10:17:53,793 | INFO     | [job] job monitor thread has finished
[2025-10-13 12:18:38] 2025-10-13 10:17:53,973 | INFO     | [payload] control thread has finished
[2025-10-13 12:18:38] 2025-10-13 10:17:54,014 | INFO     | [payload] validate_post thread has finished
[2025-10-13 12:18:38] 2025-10-13 10:17:54,486 | INFO     | [data] control thread has finished
[2025-10-13 12:18:38] 2025-10-13 10:17:54,491 | INFO     | [job] control thread has finished
[2025-10-13 12:18:38] 2025-10-13 10:17:54,936 | INFO     | [data] copytool_in thread has finished
[2025-10-13 12:18:38] 2025-10-13 10:17:54,989 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 12:18:38] 2025-10-13 10:17:55,002 | INFO     | [payload] failed_post thread has finished
[2025-10-13 12:18:38] 2025-10-13 10:17:55,166 | INFO     | [job] validate thread has finished
[2025-10-13 12:18:38] 2025-10-13 10:17:55,255 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 12:18:38] 2025-10-13 10:17:55,272 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 12:18:38] 2025-10-13 10:17:55,289 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 12:18:38] 2025-10-13 10:17:55,316 | INFO     | [data] copytool_out thread has finished
[2025-10-13 12:18:38] 2025-10-13 10:17:56,794 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 12:18:38] 2025-10-13 10:18:23,105 | INFO     | PID=3882367 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 12:18:38] 2025-10-13 10:18:23,105 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 12:18:38] 2025-10-13 10:18:23,105 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 12:18:38] 2025-10-13 10:18:23,105 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 12:18:38] 2025-10-13 10:18:33,552 | INFO     | [monitor] cgroup control has ended
[2025-10-13 12:18:38] 2025-10-13 10:18:33,735 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139914295031616)>', '<ExcThread(monitor, started 139914014328576)>']
[2025-10-13 12:18:38] 2025-10-13 10:18:34,162 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 12:18:38] 2025-10-13 10:18:34,162 | INFO     | [monitor] control thread has ended
[2025-10-13 12:18:38] 2025-10-13 10:18:38,736 | INFO     | all workflow threads have been joined
[2025-10-13 12:18:38] 2025-10-13 10:18:38,736 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 12:18:38] 2025-10-13 10:18:38,737 | INFO     | traces error code: 0
[2025-10-13 12:18:38] 2025-10-13 10:18:38,738 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 12:18:38] 2025-10-13 10:18:38,792 [wrapper] ==== pilot stdout END ====
[2025-10-13 12:18:38] 2025-10-13 10:18:38,795 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 12:18:38] 2025-10-13 10:18:38,797 [wrapper] pilotpid: 3882367
[2025-10-13 12:18:38] 2025-10-13 10:18:38,800 [wrapper] Pilot exit status: 0
[2025-10-13 12:18:38] 2025-10-13 10:18:38,808 [wrapper] pandaids: 6840712859
[2025-10-13 12:18:38] 2025-10-13 10:18:38,826 [wrapper] cleanup supervisor_pilot 3898987 3882368
[2025-10-13 12:18:38] 2025-10-13 10:18:38,829 [wrapper] Test setup, not cleaning
[2025-10-13 12:18:38] 2025-10-13 10:18:38,832 [wrapper] apfmon messages muted
[2025-10-13 12:18:38] 2025-10-13 10:18:38,834 [wrapper] ==== wrapper stdout END ====
[2025-10-13 12:18:38] 2025-10-13 10:18:38,836 [wrapper] ==== wrapper stderr END ====
[2025-10-13 12:18:38]  *** Error codes and diagnostics ***
[2025-10-13 12:18:38]     "exeErrorCode": 0,
[2025-10-13 12:18:38]     "exeErrorDiag": "",
[2025-10-13 12:18:38]     "pilotErrorCode": 0,
[2025-10-13 12:18:38]     "pilotErrorDiag": "",
[2025-10-13 12:18:38]  *** Listing of results directory ***
[2025-10-13 12:18:38] total 413516
[2025-10-13 12:18:38] -rw-r--r-- 1 boinc boinc    557409 Oct 12 20:53 pilot3.tar.gz
[2025-10-13 12:18:38] -rw-r--r-- 1 boinc boinc      5112 Oct 12 21:23 queuedata.json
[2025-10-13 12:18:38] -rwx------ 1 boinc boinc     36292 Oct 12 21:23 runpilot2-wrapper.sh
[2025-10-13 12:18:38] -rw-r--r-- 1 boinc boinc       100 Oct 13 11:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 12:18:38] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 11:13 run_atlas
[2025-10-13 12:18:38] -rw-r--r-- 1 boinc boinc       105 Oct 13 11:13 job.xml
[2025-10-13 12:18:38] -rw-r--r-- 2 boinc boinc 218012306 Oct 13 11:13 EVNT.46676267._004449.pool.root.1
[2025-10-13 12:18:38] -rw-r--r-- 2 boinc boinc    569685 Oct 13 11:13 input.tar.gz
[2025-10-13 12:18:38] -rw-r--r-- 2 boinc boinc     15120 Oct 13 11:13 start_atlas.sh
[2025-10-13 12:18:38] drwxrwx--x 2 boinc boinc      4096 Oct 13 11:13 shared
[2025-10-13 12:18:38] -rw-r--r-- 1 boinc boinc         0 Oct 13 11:13 boinc_setup_complete
[2025-10-13 12:18:38] -rw-r--r-- 1 boinc boinc      6438 Oct 13 11:13 init_data.xml
[2025-10-13 12:18:38] -rw-r--r-- 1 boinc boinc         0 Oct 13 11:13 boinc_lockfile
[2025-10-13 12:18:38] -rw-r--r-- 1 boinc boinc      2550 Oct 13 11:13 pandaJob.out
[2025-10-13 12:18:38] -rw------- 1 boinc boinc    972857 Oct 13 11:13 agis_schedconf.cvmfs.json
[2025-10-13 12:18:38] -rw------- 1 boinc boinc   1560580 Oct 13 11:13 agis_ddmendpoints.agis.ALL.json
[2025-10-13 12:18:38] drwx------ 5 boinc boinc      4096 Oct 13 11:13 pilot3
[2025-10-13 12:18:38] -rw------- 1 boinc boinc 199863528 Oct 13 12:17 HITS.46676269._087372.pool.root.1
[2025-10-13 12:18:38] -rw-r--r-- 1 boinc boinc       529 Oct 13 12:17 boinc_task_state.xml
[2025-10-13 12:18:38] -rw------- 1 boinc boinc      1018 Oct 13 12:17 memory_monitor_summary.json
[2025-10-13 12:18:38] -rw------- 1 boinc boinc    256409 Oct 13 12:17 log.46676269._087372.job.log.tgz.1
[2025-10-13 12:18:38] -rw------- 1 boinc boinc        95 Oct 13 12:17 pilot_heartbeat.json
[2025-10-13 12:18:38] -rw------- 1 boinc boinc      7752 Oct 13 12:17 heartbeat.json
[2025-10-13 12:18:38] -rw-r--r-- 1 boinc boinc        27 Oct 13 12:18 wrapper_checkpoint.txt
[2025-10-13 12:18:38] -rw-r--r-- 1 boinc boinc      8192 Oct 13 12:18 boinc_mmap_file
[2025-10-13 12:18:38] -rw------- 1 boinc boinc      4752 Oct 13 12:18 pilotlog.txt
[2025-10-13 12:18:38] -rw------- 1 boinc boinc    580515 Oct 13 12:18 log.46676269._087372.job.log.1
[2025-10-13 12:18:38] -rw------- 1 boinc boinc       357 Oct 13 12:18 output.list
[2025-10-13 12:18:38] -rw-r--r-- 1 boinc boinc       620 Oct 13 12:18 runtime_log
[2025-10-13 12:18:38] -rw------- 1 boinc boinc    860160 Oct 13 12:18 result.tar.gz
[2025-10-13 12:18:38] -rw-r--r-- 1 boinc boinc      8797 Oct 13 12:18 runtime_log.err
[2025-10-13 12:18:38] -rw------- 1 boinc boinc       662 Oct 13 12:18 cE6LDmiqGS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuGlNDmeC1kMo.diag
[2025-10-13 12:18:38] -rw-r--r-- 1 boinc boinc     12186 Oct 13 12:18 stderr.txt
[2025-10-13 12:18:38] HITS file was successfully produced:
[2025-10-13 12:18:38] -rw------- 1 boinc boinc 199863528 Oct 13 12:17 shared/HITS.pool.root.1
[2025-10-13 12:18:38]  *** Contents of shared directory: ***
[2025-10-13 12:18:38] total 409508
[2025-10-13 12:18:38] -rw-r--r-- 2 boinc boinc 218012306 Oct 13 11:13 ATLAS.root_0
[2025-10-13 12:18:38] -rw-r--r-- 2 boinc boinc    569685 Oct 13 11:13 input.tar.gz
[2025-10-13 12:18:38] -rw-r--r-- 2 boinc boinc     15120 Oct 13 11:13 start_atlas.sh
[2025-10-13 12:18:38] -rw------- 1 boinc boinc 199863528 Oct 13 12:17 HITS.pool.root.1
[2025-10-13 12:18:38] -rw------- 1 boinc boinc    860160 Oct 13 12:18 result.tar.gz
12:18:39 (3878572): run_atlas exited; CPU time 14535.743456
12:18:39 (3878572): called boinc_finish(0)

</stderr_txt>
]]>

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