Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:55:33 (859198): wrapper (7.7.26015): starting
19:55:33 (859198): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 19:55:33] Arguments: --nthreads 8
[2025-10-12 19:55:33] Threads: 8
[2025-10-12 19:55:33] Checking for CVMFS
[2025-10-12 19:55:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:55:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:55:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:55:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:55:34] 2.13.2.0 3269412 36414 408420 151641 1 727 38139250 40960000 31196 16776704 0 469468332 99.848 185475524 36760 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 19:55:34] CVMFS is ok
[2025-10-12 19:55:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:55:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:55:34] Further information can be found at the LHC@home message board.
[2025-10-12 19:55:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:55:34] Checking for apptainer binary...
[2025-10-12 19:55:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:55:34] Running /usr/bin/apptainer --version
[2025-10-12 19:55:35] apptainer version 1.4.3-1.el9
[2025-10-12 19:55:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:55:35] c8-16-2.aglt2.org
[2025-10-12 19:55:35] apptainer works
[2025-10-12 19:55:35] Set ATHENA_PROC_NUMBER=8
[2025-10-12 19:55:35] Set ATHENA_CORE_NUMBER=8
[2025-10-12 19:55:35] Starting ATLAS job with PandaID=6840390545
[2025-10-12 19:55:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:52:22]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:52:22] 2025-10-13 00:51:33,121 | INFO     | time since job start (3332s) is within the limit (172800.0s)
[2025-10-12 20:52:22] 2025-10-13 00:51:33,977 | INFO     | job 6840390545 has state=finished
[2025-10-12 20:52:22] 2025-10-13 00:51:33,978 | INFO     | preparing for final server update for job 6840390545 in state='finished'
[2025-10-12 20:52:22] 2025-10-13 00:51:33,978 | INFO     | this job has now completed (state=finished)
[2025-10-12 20:52:22] 2025-10-13 00:51:33,978 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 20:52:22] 2025-10-13 00:51:33,979 | INFO     | log transfer has been attempted: DONE
[2025-10-12 20:52:22] 2025-10-13 00:51:33,979 | INFO     | job 6840390545 has finished - writing final server update
[2025-10-12 20:52:22] 2025-10-13 00:51:33,979 | INFO     | total number of processed events: 400 (read)
[2025-10-12 20:52:22] 2025-10-13 00:51:34,020 | INFO     | executing command: lscpu
[2025-10-12 20:52:22] 2025-10-13 00:51:34,095 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 20:52:22] 2025-10-13 00:51:34,551 | WARNING  | process 884790 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 20:52:22] 2025-10-13 00:51:34,551 | INFO     | using path: /tmp/boinchome/slots/11/PanDA_Pilot-6840390545/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 20:52:22] 2025-10-13 00:51:35,129 | INFO     | time since job start (3334s) is within the limit (172800.0s)
[2025-10-12 20:52:22] 2025-10-13 00:51:35,333 | INFO     | number of running child processes to parent process 884790: 1
[2025-10-12 20:52:22] 2025-10-13 00:51:35,333 | INFO     | maximum number of monitored processes: 6
[2025-10-12 20:52:22] 2025-10-13 00:51:37,137 | INFO     | time since job start (3336s) is within the limit (172800.0s)
[2025-10-12 20:52:22] 2025-10-13 00:51:37,840 | INFO     | monitor loop #231: job 0:6840390545 is in state 'finished'
[2025-10-12 20:52:22] 2025-10-13 00:51:37,840 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:52:22] 2025-10-13 00:51:39,144 | INFO     | time since job start (3338s) is within the limit (172800.0s)
[2025-10-12 20:52:22] 2025-10-13 00:51:40,349 | INFO     | monitor loop #232: job 0:6840390545 is in state 'finished'
[2025-10-12 20:52:22] 2025-10-13 00:51:40,349 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:52:22] 2025-10-13 00:51:41,189 | INFO     | PID=866774 has CPU usage=16.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 20:52:22] 2025-10-13 00:51:41,189 | INFO     | .. there are 39 such processes running
[2025-10-12 20:52:22] 2025-10-13 00:51:42,193 | INFO     | time since job start (3341s) is within the limit (172800.0s)
[2025-10-12 20:52:22] 2025-10-13 00:51:42,853 | INFO     | monitor loop #233: job 0:6840390545 is in state 'finished'
[2025-10-12 20:52:22] 2025-10-13 00:51:42,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:52:22] 2025-10-13 00:51:44,200 | INFO     | time since job start (3343s) is within the limit (172800.0s)
[2025-10-12 20:52:22] 2025-10-13 00:51:45,358 | INFO     | monitor loop #234: job 0:6840390545 is in state 'finished'
[2025-10-12 20:52:22] 2025-10-13 00:51:45,358 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:52:22] 2025-10-13 00:51:46,209 | INFO     | time since job start (3345s) is within the limit (172800.0s)
[2025-10-12 20:52:22] 2025-10-13 00:51:47,862 | INFO     | monitor loop #235: job 0:6840390545 is in state 'finished'
[2025-10-12 20:52:22] 2025-10-13 00:51:47,862 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:52:22] 2025-10-13 00:51:48,216 | INFO     | time since job start (3347s) is within the limit (172800.0s)
[2025-10-12 20:52:22] 2025-10-13 00:51:49,565 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 20:52:22] 2025-10-13 00:51:49,570 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3795.692539062497
[2025-10-12 20:52:22] 2025-10-13 00:51:49,584 | INFO     | using path: /tmp/boinchome/slots/11/PanDA_Pilot-6840390545/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 20:52:22] 2025-10-13 00:51:49,585 | INFO     | extracted standard info from prmon json
[2025-10-12 20:52:22] 2025-10-13 00:51:49,585 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 20:52:22] 2025-10-13 00:51:49,585 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 20:52:22] 2025-10-13 00:51:49,585 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 20:52:22] 2025-10-13 00:51:49,585 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 20:52:22] 2025-10-13 00:51:49,586 | INFO     | fitting pss+swap vs Time
[2025-10-12 20:52:22] 2025-10-13 00:51:49,586 | INFO     | sum of square deviations: 32179208.0
[2025-10-12 20:52:22] 2025-10-13 00:51:49,587 | INFO     | sum of deviations: 307154459.00000006
[2025-10-12 20:52:22] 2025-10-13 00:51:49,587 | INFO     | mean x: 1760315114.0
[2025-10-12 20:52:22] 2025-10-13 00:51:49,587 | INFO     | mean y: 2171954.5531914895
[2025-10-12 20:52:22] 2025-10-13 00:51:49,587 | INFO     | -- intersect: -16800250171.876812
[2025-10-12 20:52:22] 2025-10-13 00:51:49,587 | INFO     | intersect: -16800250171.876812
[2025-10-12 20:52:22] 2025-10-13 00:51:49,587 | INFO     | chi2: 0.010930571086712533
[2025-10-12 20:52:22] 2025-10-13 00:51:49,587 | INFO     | -- intersect: -16800250171.876812
[2025-10-12 20:52:22] 2025-10-13 00:51:49,587 | INFO     | current memory leak: 9.55 B/s (using 47 data points, chi2=0.01)
[2025-10-12 20:52:22] 2025-10-13 00:51:49,587 | INFO     | could have reported an average CPU frequency of 3787 MHz (5 samples)
[2025-10-12 20:52:22] 2025-10-13 00:51:49,587 | INFO     | ..............................
[2025-10-12 20:52:22] 2025-10-13 00:51:49,587 | INFO     | . Timing measurements:
[2025-10-12 20:52:22] 2025-10-13 00:51:49,587 | INFO     | . get job = 0 s
[2025-10-12 20:52:22] 2025-10-13 00:51:49,587 | INFO     | . initial setup = 3 s
[2025-10-12 20:52:22] 2025-10-13 00:51:49,587 | INFO     | . payload setup = 12 s
[2025-10-12 20:52:22] 2025-10-13 00:51:49,587 | INFO     | . stage-in = 0 s
[2025-10-12 20:52:22] 2025-10-13 00:51:49,587 | INFO     | . payload execution = 3290 s
[2025-10-12 20:52:22] 2025-10-13 00:51:49,587 | INFO     | . stage-out = 0 s
[2025-10-12 20:52:22] 2025-10-13 00:51:49,587 | INFO     | . log creation = 0 s
[2025-10-12 20:52:22] 2025-10-13 00:51:49,588 | INFO     | ..............................
[2025-10-12 20:52:22] 2025-10-13 00:51:49,648 | INFO     | 
[2025-10-12 20:52:22] 2025-10-13 00:51:49,648 | INFO     | job summary report
[2025-10-12 20:52:22] 2025-10-13 00:51:49,648 | INFO     | --------------------------------------------------
[2025-10-12 20:52:22] 2025-10-13 00:51:49,648 | INFO     | PanDA job id: 6840390545
[2025-10-12 20:52:22] 2025-10-13 00:51:49,648 | INFO     | task id: 46676269
[2025-10-12 20:52:22] 2025-10-13 00:51:49,648 | INFO     | errors: (none)
[2025-10-12 20:52:22] 2025-10-13 00:51:49,648 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 20:52:22] 2025-10-13 00:51:49,648 | INFO     | pilot state: finished 
[2025-10-12 20:52:22] 2025-10-13 00:51:49,648 | INFO     | transexitcode: 0
[2025-10-12 20:52:22] 2025-10-13 00:51:49,648 | INFO     | exeerrorcode: 0
[2025-10-12 20:52:22] 2025-10-13 00:51:49,648 | INFO     | exeerrordiag: 
[2025-10-12 20:52:22] 2025-10-13 00:51:49,648 | INFO     | exitcode: 0
[2025-10-12 20:52:22] 2025-10-13 00:51:49,648 | INFO     | exitmsg: OK
[2025-10-12 20:52:22] 2025-10-13 00:51:49,648 | INFO     | cpuconsumptiontime: 22212 s
[2025-10-12 20:52:22] 2025-10-13 00:51:49,648 | INFO     | nevents: 400
[2025-10-12 20:52:22] 2025-10-13 00:51:49,649 | INFO     | neventsw: 0
[2025-10-12 20:52:22] 2025-10-13 00:51:49,649 | INFO     | pid: 884790
[2025-10-12 20:52:22] 2025-10-13 00:51:49,649 | INFO     | pgrp: 884790
[2025-10-12 20:52:22] 2025-10-13 00:51:49,649 | INFO     | corecount: 8
[2025-10-12 20:52:22] 2025-10-13 00:51:49,649 | INFO     | event service: False
[2025-10-12 20:52:22] 2025-10-13 00:51:49,649 | INFO     | sizes: {0: 2348687, 1: 2348886, 10: 2349148, 11: 2349176, 3306: 2374794, 3308: 2383794, 3310: 2383978, 3327: 2384204}
[2025-10-12 20:52:22] 2025-10-13 00:51:49,649 | INFO     | --------------------------------------------------
[2025-10-12 20:52:22] 2025-10-13 00:51:49,649 | INFO     | 
[2025-10-12 20:52:22] 2025-10-13 00:51:49,649 | INFO     | executing command: ls -lF /tmp/boinchome/slots/11
[2025-10-12 20:52:22] 2025-10-13 00:51:49,694 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,694 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,694 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,694 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,694 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,694 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,694 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,695 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,695 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,695 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,695 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,695 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,695 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,695 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,695 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,695 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,695 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,695 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 20:52:22] 2025-10-13 00:51:49,695 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,695 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 20:52:22] 2025-10-13 00:51:49,695 | INFO     | job 6840390545 has completed (purged errors)
[2025-10-12 20:52:22] 2025-10-13 00:51:49,695 | INFO     | overall cleanup function is called
[2025-10-12 20:52:22] 2025-10-13 00:51:50,708 | INFO     | --- collectZombieJob: --- 10, [884790]
[2025-10-12 20:52:22] 2025-10-13 00:51:50,708 | INFO     | zombie collector waiting for pid 884790
[2025-10-12 20:52:22] 2025-10-13 00:51:50,708 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:52:22] 2025-10-13 00:51:50,708 | INFO     | collected zombie processes
[2025-10-12 20:52:22] 2025-10-13 00:51:50,708 | INFO     | will attempt to kill all subprocesses of pid=884790
[2025-10-12 20:52:22] 2025-10-13 00:51:51,660 | INFO     | process IDs to be killed: [884790] (in reverse order)
[2025-10-12 20:52:22] 2025-10-13 00:51:51,885 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:52:22] 2025-10-13 00:51:51,885 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:52:22] 2025-10-13 00:51:51,919 | INFO     | did not find any defunct processes belonging to 884790
[2025-10-12 20:52:22] 2025-10-13 00:51:51,953 | INFO     | did not find any defunct processes belonging to 884790
[2025-10-12 20:52:22] 2025-10-13 00:51:51,953 | INFO     | ready for new job
[2025-10-12 20:52:22] 2025-10-13 00:51:51,953 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:52:22] 2025-10-13 00:51:51,955 | INFO     | ***************************************
[2025-10-12 20:52:22] 2025-10-13 00:51:51,955 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:52:22] 2025-10-13 00:51:51,955 | INFO     | ***************************************
[2025-10-12 20:52:22] 2025-10-13 00:51:51,955 | INFO     | 
[2025-10-12 20:52:22] 2025-10-13 00:51:51,960 | INFO     | architecture information:
[2025-10-12 20:52:22] 2025-10-13 00:51:51,960 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:52:22] 2025-10-13 00:51:52,027 | INFO     | cat /etc/os-release:
[2025-10-12 20:52:22] NAME="CentOS Linux"
[2025-10-12 20:52:22] VERSION="7 (Core)"
[2025-10-12 20:52:22] ID="centos"
[2025-10-12 20:52:22] ID_LIKE="rhel fedora"
[2025-10-12 20:52:22] VERSION_ID="7"
[2025-10-12 20:52:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:52:22] ANSI_COLOR="0;31"
[2025-10-12 20:52:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:52:22] HOME_URL="https://www.centos.org/"
[2025-10-12 20:52:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:52:22] 
[2025-10-12 20:52:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:52:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:52:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:52:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:52:22] 
[2025-10-12 20:52:22] 2025-10-13 00:51:52,028 | INFO     | ***************************************
[2025-10-12 20:52:22] 2025-10-13 00:51:52,532 | INFO     | executing command: df -mP /tmp/boinchome/slots/11
[2025-10-12 20:52:22] 2025-10-13 00:51:52,574 | INFO     | sufficient remaining disk space (167163985920 B)
[2025-10-12 20:52:22] 2025-10-13 00:51:52,574 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:52:22] 2025-10-13 00:51:52,575 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:52:22] 2025-10-13 00:51:52,575 | INFO     | update_server=False
[2025-10-12 20:52:22] 2025-10-13 00:51:52,575 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:52:22] 2025-10-13 00:51:52,576 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:52:22] 2025-10-13 00:51:52,638 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:52:22] 2025-10-13 00:51:52,880 | INFO     | all data control threads have been joined
[2025-10-12 20:52:22] 2025-10-13 00:51:52,889 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 20:52:22] 2025-10-13 00:51:52,889 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 20:52:22] 2025-10-13 00:51:52,889 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:52:22] 2025-10-13 00:51:52,889 | INFO     | will abort loop
[2025-10-12 20:52:22] 2025-10-13 00:51:53,355 | INFO     | all payload control threads have been joined
[2025-10-12 20:52:22] 2025-10-13 00:51:53,581 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:52:22] 2025-10-13 00:51:53,633 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:52:22] 2025-10-13 00:51:53,752 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:52:22] 2025-10-13 00:51:53,886 | INFO     | [data] control thread has finished
[2025-10-12 20:52:22] 2025-10-13 00:51:53,895 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:52:22] 2025-10-13 00:51:53,898 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:52:22] 2025-10-13 00:51:53,958 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:52:22] 2025-10-13 00:51:54,114 | INFO     | all job control threads have been joined
[2025-10-12 20:52:22] 2025-10-13 00:51:54,361 | INFO     | [payload] control thread has finished
[2025-10-12 20:52:22] 2025-10-13 00:51:54,582 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:52:22] 2025-10-13 00:51:54,628 | INFO     | [job] validate thread has finished
[2025-10-12 20:52:22] 2025-10-13 00:51:54,661 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:52:22] 2025-10-13 00:51:54,705 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:52:22] 2025-10-13 00:51:54,988 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:52:22] 2025-10-13 00:51:55,120 | INFO     | [job] control thread has finished
[2025-10-12 20:52:22] 2025-10-13 00:51:55,667 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:52:22] 2025-10-13 00:51:56,648 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:52:22] 2025-10-13 00:52:02,795 | INFO     | job.realtimelogging is not enabled
[2025-10-12 20:52:22] 2025-10-13 00:52:03,800 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:52:22] 2025-10-13 00:52:06,187 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:52:22] 2025-10-13 00:52:06,192 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139697962161984)>', '<ExcThread(monitor, started 139697460324096)>']
[2025-10-12 20:52:22] 2025-10-13 00:52:11,219 | INFO     | all workflow threads have been joined
[2025-10-12 20:52:22] 2025-10-13 00:52:11,219 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:52:22] 2025-10-13 00:52:11,219 | INFO     | traces error code: 0
[2025-10-12 20:52:22] 2025-10-13 00:52:11,219 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:52:22] 2025-10-13 00:52:22,224 | INFO     | PID=866774 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 20:52:22] 2025-10-13 00:52:22,225 | INFO     | .. there are 39 such processes running
[2025-10-12 20:52:22] 2025-10-13 00:52:22,229 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:52:22] 2025-10-13 00:52:22,229 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:52:22] 2025-10-13 00:52:22,229 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:52:22] 2025-10-13 00:52:22,229 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:52:22] 2025-10-13 00:52:22,229 | INFO     | [monitor] control thread has ended
[2025-10-12 20:52:22] 2025-10-13 00:52:22,471 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:52:22] 2025-10-13 00:52:22,483 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:52:22] 2025-10-13 00:52:22,490 [wrapper] pilotpid: 866774
[2025-10-12 20:52:22] 2025-10-13 00:52:22,497 [wrapper] Pilot exit status: 0
[2025-10-12 20:52:22] 2025-10-13 00:52:22,565 [wrapper] pandaids: 6840390545
[2025-10-12 20:52:22] 2025-10-13 00:52:22,757 [wrapper] cleanup supervisor_pilot 1265495 866775
[2025-10-12 20:52:22] 2025-10-13 00:52:22,762 [wrapper] Test setup, not cleaning
[2025-10-12 20:52:22] 2025-10-13 00:52:22,766 [wrapper] apfmon messages muted
[2025-10-12 20:52:22] 2025-10-13 00:52:22,776 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:52:22] 2025-10-13 00:52:22,785 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:52:22]  *** Error codes and diagnostics ***
[2025-10-12 20:52:22]     "exeErrorCode": 0,
[2025-10-12 20:52:22]     "exeErrorDiag": "",
[2025-10-12 20:52:22]     "pilotErrorCode": 0,
[2025-10-12 20:52:22]     "pilotErrorDiag": "",
[2025-10-12 20:52:22]  *** Listing of results directory ***
[2025-10-12 20:52:22] total 412848
[2025-10-12 20:52:22] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 12:01 pilot3.tar.gz
[2025-10-12 20:52:22] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 12:23 queuedata.json
[2025-10-12 20:52:22] -rwx------. 1 boincer umatlas     36292 Oct 12 12:24 runpilot2-wrapper.sh
[2025-10-12 20:52:22] -rw-r--r--. 1 boincer umatlas       100 Oct 12 19:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:52:22] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 19:55 run_atlas
[2025-10-12 20:52:22] -rw-r--r--. 1 boincer umatlas       105 Oct 12 19:55 job.xml
[2025-10-12 20:52:22] -rw-r--r--. 2 boincer umatlas 219925643 Oct 12 19:55 EVNT.46676267._004737.pool.root.1
[2025-10-12 20:52:22] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 19:55 start_atlas.sh
[2025-10-12 20:52:22] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 19:55 shared
[2025-10-12 20:52:22] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 19:55 input.tar.gz
[2025-10-12 20:52:22] -rw-r--r--. 1 boincer umatlas         0 Oct 12 19:55 boinc_lockfile
[2025-10-12 20:52:22] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 19:55 pandaJob.out
[2025-10-12 20:52:22] -rw-------. 1 boincer umatlas    975603 Oct 12 19:55 agis_schedconf.cvmfs.json
[2025-10-12 20:52:22] -rw-------. 1 boincer umatlas   1560580 Oct 12 19:55 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:52:22] drwx------. 5 boincer umatlas      4096 Oct 12 19:56 pilot3
[2025-10-12 20:52:22] -rw-r--r--. 1 boincer umatlas      7163 Oct 12 20:49 init_data.xml
[2025-10-12 20:52:22] -rw-------. 1 boincer umatlas 197289570 Oct 12 20:51 HITS.46676269._083377.pool.root.1
[2025-10-12 20:52:22] -rw-r--r--. 1 boincer umatlas       530 Oct 12 20:51 boinc_task_state.xml
[2025-10-12 20:52:22] -rw-------. 1 boincer umatlas      1033 Oct 12 20:51 memory_monitor_summary.json
[2025-10-12 20:52:22] -rw-------. 1 boincer umatlas    328536 Oct 12 20:51 log.46676269._083377.job.log.tgz.1
[2025-10-12 20:52:22] -rw-------. 1 boincer umatlas        95 Oct 12 20:51 pilot_heartbeat.json
[2025-10-12 20:52:22] -rw-------. 1 boincer umatlas      7772 Oct 12 20:51 heartbeat.json
[2025-10-12 20:52:22] -rw-------. 1 boincer umatlas       822 Oct 12 20:52 pilotlog.txt
[2025-10-12 20:52:22] -rw-r--r--. 1 boincer umatlas        27 Oct 12 20:52 wrapper_checkpoint.txt
[2025-10-12 20:52:22] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 20:52 boinc_mmap_file
[2025-10-12 20:52:22] -rw-------. 1 boincer umatlas    491832 Oct 12 20:52 log.46676269._083377.job.log.1
[2025-10-12 20:52:22] -rw-------. 1 boincer umatlas       357 Oct 12 20:52 output.list
[2025-10-12 20:52:22] -rw-r--r--. 1 boincer umatlas       620 Oct 12 20:52 runtime_log
[2025-10-12 20:52:22] -rw-------. 1 boincer umatlas    839680 Oct 12 20:52 result.tar.gz
[2025-10-12 20:52:22] -rw-r--r--. 1 boincer umatlas      8712 Oct 12 20:52 runtime_log.err
[2025-10-12 20:52:22] -rw-------. 1 boincer umatlas       651 Oct 12 20:52 jQeLDmW3DS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmckNDmZVrHWo.diag
[2025-10-12 20:52:22] -rw-r--r--. 1 boincer umatlas     22232 Oct 12 20:52 stderr.txt
[2025-10-12 20:52:23] HITS file was successfully produced:
[2025-10-12 20:52:23] -rw-------. 1 boincer umatlas 197289570 Oct 12 20:51 shared/HITS.pool.root.1
[2025-10-12 20:52:23]  *** Contents of shared directory: ***
[2025-10-12 20:52:23] total 408840
[2025-10-12 20:52:23] -rw-r--r--. 2 boincer umatlas 219925643 Oct 12 19:55 ATLAS.root_0
[2025-10-12 20:52:23] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 19:55 start_atlas.sh
[2025-10-12 20:52:23] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 19:55 input.tar.gz
[2025-10-12 20:52:23] -rw-------. 1 boincer umatlas 197289570 Oct 12 20:51 HITS.pool.root.1
[2025-10-12 20:52:23] -rw-------. 1 boincer umatlas    839680 Oct 12 20:52 result.tar.gz
20:52:24 (859198): run_atlas exited; CPU time 22317.820484
20:52:24 (859198): called boinc_finish(0)

</stderr_txt>
]]>

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