Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:43:25 (1797063): wrapper (7.7.26015): starting
16:43:25 (1797063): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 16:43:25] Arguments: --nthreads 12
[2025-10-12 16:43:25] Threads: 12
[2025-10-12 16:43:25] Checking for CVMFS
[2025-10-12 16:43:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:43:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:43:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:43:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:43:25] 2.11.5.0 2473 31804 204788 151641 1 364 39131397 45568000 14324 130560 0 321819532 99.858 142385561 21854 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-12 16:43:25] CVMFS is ok
[2025-10-12 16:43:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:43:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:43:25] Further information can be found at the LHC@home message board.
[2025-10-12 16:43:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:43:25] Checking for apptainer binary...
[2025-10-12 16:43:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:43:25] Running /usr/bin/apptainer --version
[2025-10-12 16:43:25] apptainer version 1.4.1-1.el9
[2025-10-12 16:43:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:43:26] wns0045.triumf.lcg
[2025-10-12 16:43:26] apptainer works
[2025-10-12 16:43:26] Set ATHENA_PROC_NUMBER=12
[2025-10-12 16:43:26] Set ATHENA_CORE_NUMBER=12
[2025-10-12 16:43:26] Starting ATLAS job with PandaID=6840834745
[2025-10-12 16:43:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:49:09]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | WARNING  | wrong length of table data, x=[1760312729.0], y=[1556.0] (must be same and length>=4)
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | could have reported an average CPU frequency of 2403 MHz (4 samples)
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | ..............................
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . Timing measurements:
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . get job = 0 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . initial setup = 4 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . payload setup = 22 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . stage-in = 0 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . payload execution = 46 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . stage-out = 0 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . log creation = 0 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | ..............................
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 16:49:09] 2025-10-12 23:48:11,380 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6840834745/pilotlog.txt
[2025-10-12 16:49:09] 2025-10-12 23:48:11,415 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-12 16:49:09] - Log from pilotlog.txt -
[2025-10-12 16:49:09] 2025-10-12 23:48:11,377 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6840834745/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 16:49:09] 2025-10-12 23:48:11,377 | INFO     | extracted standard info from prmon json
[2025-10-12 16:49:09] 2025-10-12 23:48:11,378 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 16:49:09] 2025-10-12 23:48:11,378 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 16:49:09] 2025-10-12 23:48:11,378 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 16:49:09] 2025-10-12 23:48:11,378 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | WARNING  | wrong length of table data, x=[1760312729.0], y=[1556.0] (must be same and length>=4)
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | could have reported an average CPU frequency of 2403 MHz (4 samples)
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | ..............................
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . Timing measurements:
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . get job = 0 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . initial setup = 4 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . payload setup = 22 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . stage-in = 0 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . payload execution = 46 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . stage-out = 0 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . log creation = 0 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | ..............................
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 16:49:09] 2025-10-12 23:48:11,380 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6840834745/pilotlog.txt
[2025-10-12 16:49:09] 2025-10-12 23:48:11,415 | WARNING  | 
[2025-10-12 16:49:09] [begin log extracts]
[2025-10-12 16:49:09] - Log from pilotlog.txt -
[2025-10-12 16:49:09] 2025-10-12 23:48:11,377 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6840834745/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 16:49:09] 2025-10-12 23:48:11,377 | INFO     | extracted standard info from prmon json
[2025-10-12 16:49:09] 2025-10-12 23:48:11,378 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 16:49:09] 2025-10-12 23:48:11,378 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 16:49:09] 2025-10-12 23:48:11,378 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 16:49:09] 2025-10-12 23:48:11,378 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | WARNING  | wrong length of table data, x=[1760312729.0], y=[1556.0] (must be same and length>=4)
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | could have reported an average CPU frequency of 2403 MHz (4 samples)
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | ..............................
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . Timing measurements:
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . get job = 0 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . initial setup = 4 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . payload setup = 22 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . stage-in = 0 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . payload execution = 46 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . stage-out = 0 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | . log creation = 0 s
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | ..............................
[2025-10-12 16:49:09] 2025-10-12 23:48:11,379 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 16:49:09] 2025-10-12 23:48:11,380 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6840834745/pilotlog.txt
[2025-10-12 16:49:09] [end log extracts]
[2025-10-12 16:49:09] 2025-10-12 23:48:11,415 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-12 16:49:09] 2025-10-12 23:48:11,416 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-12 16:49:09] 2025-10-12 23:48:12,250 | INFO     | 
[2025-10-12 16:49:09] 2025-10-12 23:48:12,250 | INFO     | job summary report
[2025-10-12 16:49:09] 2025-10-12 23:48:12,250 | INFO     | --------------------------------------------------
[2025-10-12 16:49:09] 2025-10-12 23:48:12,250 | INFO     | PanDA job id: 6840834745
[2025-10-12 16:49:09] 2025-10-12 23:48:12,250 | INFO     | task id: 46676269
[2025-10-12 16:49:09] 2025-10-12 23:48:12,250 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-12 16:45:45,149 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-12 16:49:09] 2025-10-12 23:48:12,250 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 16:49:09] 2025-10-12 23:48:12,250 | INFO     | pilot state: failed 
[2025-10-12 16:49:09] 2025-10-12 23:48:12,250 | INFO     | transexitcode: 65
[2025-10-12 16:49:09] 2025-10-12 23:48:12,250 | INFO     | exeerrorcode: 65
[2025-10-12 16:49:09] 2025-10-12 23:48:12,250 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 16:49:09] 2025-10-12 23:48:12,250 | INFO     | exitcode: 65
[2025-10-12 16:49:09] 2025-10-12 23:48:12,250 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 16:49:09] 2025-10-12 23:48:12,251 | INFO     | cpuconsumptiontime: 19 s
[2025-10-12 16:49:09] 2025-10-12 23:48:12,251 | INFO     | nevents: 0
[2025-10-12 16:49:09] 2025-10-12 23:48:12,251 | INFO     | neventsw: 0
[2025-10-12 16:49:09] 2025-10-12 23:48:12,251 | INFO     | pid: 1807422
[2025-10-12 16:49:09] 2025-10-12 23:48:12,251 | INFO     | pgrp: 1807422
[2025-10-12 16:49:09] 2025-10-12 23:48:12,251 | INFO     | corecount: 12
[2025-10-12 16:49:09] 2025-10-12 23:48:12,251 | INFO     | event service: False
[2025-10-12 16:49:09] 2025-10-12 23:48:12,251 | INFO     | sizes: {0: 2348683, 1: 2348882, 12: 2348882, 15: 2349172, 23: 2349200, 72: 2372570, 74: 2376862, 76: 2376890, 210: 2377084}
[2025-10-12 16:49:09] 2025-10-12 23:48:12,251 | INFO     | --------------------------------------------------
[2025-10-12 16:49:09] 2025-10-12 23:48:12,251 | INFO     | 
[2025-10-12 16:49:09] 2025-10-12 23:48:12,251 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-12 16:49:09] 2025-10-12 23:48:12,436 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,436 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,436 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,436 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,436 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,437 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,437 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,437 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,437 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,437 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,437 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,437 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,437 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,437 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,437 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,437 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,437 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,437 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 16:49:09] 2025-10-12 23:48:12,437 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,437 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 16:49:09] 2025-10-12 23:48:12,437 | INFO     | job 6840834745 has completed (purged errors)
[2025-10-12 16:49:09] 2025-10-12 23:48:12,437 | INFO     | overall cleanup function is called
[2025-10-12 16:49:09] 2025-10-12 23:48:13,245 | INFO     | PID=1800757 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 16:49:09] 2025-10-12 23:48:13,245 | INFO     | .. there are 21 such processes running
[2025-10-12 16:49:09] 2025-10-12 23:48:13,446 | INFO     | --- collectZombieJob: --- 10, [1807422]
[2025-10-12 16:49:09] 2025-10-12 23:48:13,446 | INFO     | zombie collector waiting for pid 1807422
[2025-10-12 16:49:09] 2025-10-12 23:48:13,446 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:49:09] 2025-10-12 23:48:13,446 | INFO     | collected zombie processes
[2025-10-12 16:49:09] 2025-10-12 23:48:13,446 | INFO     | will attempt to kill all subprocesses of pid=1807422
[2025-10-12 16:49:09] 2025-10-12 23:48:13,778 | INFO     | process IDs to be killed: [1807422] (in reverse order)
[2025-10-12 16:49:09] 2025-10-12 23:48:13,849 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:49:09] 2025-10-12 23:48:13,850 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:49:09] 2025-10-12 23:48:13,871 | INFO     | did not find any defunct processes belonging to 1807422
[2025-10-12 16:49:09] 2025-10-12 23:48:13,898 | INFO     | did not find any defunct processes belonging to 1807422
[2025-10-12 16:49:09] 2025-10-12 23:48:13,898 | INFO     | ready for new job
[2025-10-12 16:49:09] 2025-10-12 23:48:13,898 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:49:09] 2025-10-12 23:48:13,900 | INFO     | ***************************************
[2025-10-12 16:49:09] 2025-10-12 23:48:13,900 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 16:49:09] 2025-10-12 23:48:13,900 | INFO     | ***************************************
[2025-10-12 16:49:09] 2025-10-12 23:48:13,900 | INFO     | 
[2025-10-12 16:49:09] 2025-10-12 23:48:13,912 | INFO     | architecture information:
[2025-10-12 16:49:09] 2025-10-12 23:48:13,924 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:49:09] 2025-10-12 23:48:13,952 | INFO     | cat /etc/os-release:
[2025-10-12 16:49:09] NAME="CentOS Linux"
[2025-10-12 16:49:09] VERSION="7 (Core)"
[2025-10-12 16:49:09] ID="centos"
[2025-10-12 16:49:09] ID_LIKE="rhel fedora"
[2025-10-12 16:49:09] VERSION_ID="7"
[2025-10-12 16:49:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:49:09] ANSI_COLOR="0;31"
[2025-10-12 16:49:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:49:09] HOME_URL="https://www.centos.org/"
[2025-10-12 16:49:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:49:09] 
[2025-10-12 16:49:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:49:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:49:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:49:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:49:09] 
[2025-10-12 16:49:09] 2025-10-12 23:48:13,952 | INFO     | ***************************************
[2025-10-12 16:49:09] 2025-10-12 23:48:14,455 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-12 16:49:09] 2025-10-12 23:48:14,506 | INFO     | sufficient remaining disk space (1174262513664 B)
[2025-10-12 16:49:09] 2025-10-12 23:48:14,506 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:49:09] 2025-10-12 23:48:14,506 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:49:09] 2025-10-12 23:48:14,506 | INFO     | update_server=False
[2025-10-12 16:49:09] 2025-10-12 23:48:14,506 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:49:09] 2025-10-12 23:48:14,507 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:49:09] 2025-10-12 23:48:14,508 | INFO     | aborting loop
[2025-10-12 16:49:09] 2025-10-12 23:48:14,543 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:49:09] 2025-10-12 23:48:14,671 | INFO     | all data control threads have been joined
[2025-10-12 16:49:09] 2025-10-12 23:48:14,855 | INFO     | all job control threads have been joined
[2025-10-12 16:49:09] 2025-10-12 23:48:15,054 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:49:09] 2025-10-12 23:48:15,255 | INFO     | all payload control threads have been joined
[2025-10-12 16:49:09] 2025-10-12 23:48:15,512 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:49:09] 2025-10-12 23:48:15,514 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:49:09] 2025-10-12 23:48:15,677 | INFO     | [data] control thread has finished
[2025-10-12 16:49:09] 2025-10-12 23:48:15,749 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:49:09] 2025-10-12 23:48:15,808 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:49:09] 2025-10-12 23:48:15,862 | INFO     | [job] control thread has finished
[2025-10-12 16:49:09] 2025-10-12 23:48:16,048 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:49:09] 2025-10-12 23:48:16,261 | INFO     | [payload] control thread has finished
[2025-10-12 16:49:09] 2025-10-12 23:48:16,550 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:49:09] 2025-10-12 23:48:16,584 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:49:09] 2025-10-12 23:48:16,699 | INFO     | [job] validate thread has finished
[2025-10-12 16:49:09] 2025-10-12 23:48:16,765 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:49:09] 2025-10-12 23:48:16,931 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:49:09] 2025-10-12 23:48:16,981 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:49:09] 2025-10-12 23:48:17,028 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:49:09] 2025-10-12 23:48:17,937 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:49:09] 2025-10-12 23:48:19,063 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:49:09] 2025-10-12 23:48:44,303 | INFO     | 255s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 16:49:09] 2025-10-12 23:48:45,898 | INFO     | PID=1800757 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 16:49:09] 2025-10-12 23:48:45,901 | INFO     | .. there are 21 such processes running
[2025-10-12 16:49:09] 2025-10-12 23:48:45,901 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:49:09] 2025-10-12 23:48:45,901 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:49:09] 2025-10-12 23:48:45,901 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:49:09] 2025-10-12 23:49:03,163 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:49:09] 2025-10-12 23:49:03,273 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140643981076288)>', '<ExcThread(monitor, started 140643586266880)>']
[2025-10-12 16:49:09] 2025-10-12 23:49:04,007 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:49:09] 2025-10-12 23:49:04,007 | INFO     | [monitor] control thread has ended
[2025-10-12 16:49:09] 2025-10-12 23:49:08,299 | INFO     | all workflow threads have been joined
[2025-10-12 16:49:09] 2025-10-12 23:49:08,299 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:49:09] 2025-10-12 23:49:08,299 | INFO     | traces error code: 0
[2025-10-12 16:49:09] 2025-10-12 23:49:08,299 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:49:09] 2025-10-12 23:49:08,675 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:49:09] 2025-10-12 23:49:08,678 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:49:09] 2025-10-12 23:49:08,681 [wrapper] pilotpid: 1800757
[2025-10-12 16:49:09] 2025-10-12 23:49:08,683 [wrapper] Pilot exit status: 0
[2025-10-12 16:49:09] 2025-10-12 23:49:08,731 [wrapper] pandaids: 6840834745
[2025-10-12 16:49:09] 2025-10-12 23:49:08,866 [wrapper] cleanup supervisor_pilot 1800763 1800758
[2025-10-12 16:49:09] 2025-10-12 23:49:08,869 [wrapper] Test setup, not cleaning
[2025-10-12 16:49:09] 2025-10-12 23:49:08,871 [wrapper] apfmon messages muted
[2025-10-12 16:49:09] 2025-10-12 23:49:08,874 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:49:09] 2025-10-12 23:49:08,876 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:49:09]  *** Error codes and diagnostics ***
[2025-10-12 16:49:09]     "exeErrorCode": 65,
[2025-10-12 16:49:09]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 16:49:09]     "pilotErrorCode": 1305,
[2025-10-12 16:49:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 16:49:09]  *** Listing of results directory ***
[2025-10-12 16:49:09] total 218516
[2025-10-12 16:49:09] -rw-r--r--. 1 boinc boinc    557409 Oct 12 14:31 pilot3.tar.gz
[2025-10-12 16:49:09] -rwx------. 1 boinc boinc     36292 Oct 12 14:48 runpilot2-wrapper.sh
[2025-10-12 16:49:09] -rw-r--r--. 1 boinc boinc      5112 Oct 12 14:48 queuedata.json
[2025-10-12 16:49:09] -rw-r--r--. 1 boinc boinc       100 Oct 12 16:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:49:09] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 16:43 run_atlas
[2025-10-12 16:49:09] -rw-r--r--. 1 boinc boinc       105 Oct 12 16:43 job.xml
[2025-10-12 16:49:09] -rw-r--r--. 1 boinc boinc      6594 Oct 12 16:43 init_data.xml
[2025-10-12 16:49:09] -rw-r--r--. 2 boinc boinc 219626182 Oct 12 16:43 EVNT.46676267._004842.pool.root.1
[2025-10-12 16:49:09] -rw-r--r--. 2 boinc boinc     15120 Oct 12 16:43 start_atlas.sh
[2025-10-12 16:49:09] drwxrwx--x. 2 boinc boinc      4096 Oct 12 16:43 shared
[2025-10-12 16:49:09] -rw-r--r--. 2 boinc boinc    569677 Oct 12 16:43 input.tar.gz
[2025-10-12 16:49:09] -rw-r--r--. 1 boinc boinc         0 Oct 12 16:43 boinc_lockfile
[2025-10-12 16:49:09] -rw-r--r--. 1 boinc boinc      2550 Oct 12 16:43 pandaJob.out
[2025-10-12 16:49:09] -rw-------. 1 boinc boinc    975603 Oct 12 16:43 agis_schedconf.cvmfs.json
[2025-10-12 16:49:09] -rw-------. 1 boinc boinc   1560580 Oct 12 16:44 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:49:09] drwx------. 5 boinc boinc      4096 Oct 12 16:44 pilot3
[2025-10-12 16:49:09] -rw-r--r--. 1 boinc boinc       523 Oct 12 16:45 boinc_task_state.xml
[2025-10-12 16:49:09] -rw-------. 1 boinc boinc       970 Oct 12 16:45 memory_monitor_summary.json
[2025-10-12 16:49:09] -rw-------. 1 boinc boinc     21548 Oct 12 16:45 log.46676269._090338.job.log.tgz.1
[2025-10-12 16:49:09] -rw-------. 1 boinc boinc        95 Oct 12 16:48 pilot_heartbeat.json
[2025-10-12 16:49:09] -rw-------. 1 boinc boinc      8394 Oct 12 16:48 heartbeat.json
[2025-10-12 16:49:09] -rw-r--r--. 1 boinc boinc        22 Oct 12 16:49 wrapper_checkpoint.txt
[2025-10-12 16:49:09] -rw-r--r--. 1 boinc boinc      8192 Oct 12 16:49 boinc_mmap_file
[2025-10-12 16:49:09] -rw-------. 1 boinc boinc      4937 Oct 12 16:49 pilotlog.txt
[2025-10-12 16:49:09] -rw-------. 1 boinc boinc     92187 Oct 12 16:49 log.46676269._090338.job.log.1
[2025-10-12 16:49:09] -rw-------. 1 boinc boinc       188 Oct 12 16:49 output.list
[2025-10-12 16:49:09] -rw-r--r--. 1 boinc boinc       620 Oct 12 16:49 runtime_log
[2025-10-12 16:49:09] -rw-------. 1 boinc boinc    133120 Oct 12 16:49 result.tar.gz
[2025-10-12 16:49:09] -rw-r--r--. 1 boinc boinc      8528 Oct 12 16:49 runtime_log.err
[2025-10-12 16:49:09] -rw-------. 1 boinc boinc       643 Oct 12 16:49 dgGLDmX6IS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQklNDmNbEzDo.diag
[2025-10-12 16:49:09] -rw-r--r--. 1 boinc boinc     21959 Oct 12 16:49 stderr.txt
[2025-10-12 16:49:09] No HITS result produced
[2025-10-12 16:49:09]  *** Contents of shared directory: ***
[2025-10-12 16:49:09] total 215192
[2025-10-12 16:49:09] -rw-r--r--. 2 boinc boinc 219626182 Oct 12 16:43 ATLAS.root_0
[2025-10-12 16:49:09] -rw-r--r--. 2 boinc boinc     15120 Oct 12 16:43 start_atlas.sh
[2025-10-12 16:49:09] -rw-r--r--. 2 boinc boinc    569677 Oct 12 16:43 input.tar.gz
[2025-10-12 16:49:09] -rw-------. 1 boinc boinc    133120 Oct 12 16:49 result.tar.gz
16:49:10 (1797063): run_atlas exited; CPU time 28.729631
16:49:10 (1797063): called boinc_finish(0)

</stderr_txt>
]]>

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