Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:34:17 (15045): wrapper (7.7.26015): starting
19:34:17 (15045): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 19:34:17] Arguments: --nthreads 12
[2025-10-12 19:34:17] Threads: 12
[2025-10-12 19:34:17] Checking for CVMFS
[2025-10-12 19:34:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:34:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:34:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:34:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:34:17] 2.11.2.0 6893 53461 86940 151641 1 56 13010316 20275200 1 130560 0 30053498 99.956 2530226 27973 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 19:34:17] CVMFS is ok
[2025-10-12 19:34:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:34:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:34:17] Further information can be found at the LHC@home message board.
[2025-10-12 19:34:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:34:17] Checking for apptainer binary...
[2025-10-12 19:34:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:34:17] Running /usr/bin/apptainer --version
[2025-10-12 19:34:18] apptainer version 1.3.2-1.el7
[2025-10-12 19:34:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:34:19] c-205-3.aglt2.org
[2025-10-12 19:34:19] apptainer works
[2025-10-12 19:34:19] Set ATHENA_PROC_NUMBER=12
[2025-10-12 19:34:19] Set ATHENA_CORE_NUMBER=12
[2025-10-12 19:34:19] Starting ATLAS job with PandaID=6840713304
[2025-10-12 19:34:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:44:47]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:44:47]  status=None
[2025-10-12 20:44:47]  status_code=0
[2025-10-12 20:44:47]  storage_token=
[2025-10-12 20:44:47]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840713304/log.46676269._087626.job.log.tgz.1
[2025-10-12 20:44:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/0c/log.46676269._087626.job.log.tgz.1
[2025-10-12 20:44:47]  workdir=None
[2025-10-12 20:44:47] ]
[2025-10-12 20:44:47] 2025-10-13 00:43:57,323 | INFO     | transferring file log.46676269._087626.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840713304/log.46676269._087626.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 20:44:47] 2025-10-13 00:43:57,324 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840713304/log.46676269._087626.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._087626.job
[2025-10-12 20:44:47] 2025-10-13 00:43:57,345 | INFO     | adding to output.list: log.46676269._087626.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/0c/log.46676269._087626.job.log.tg
[2025-10-12 20:44:47] 2025-10-13 00:43:57,346 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 20:44:47] 2025-10-13 00:43:57,346 | INFO     | summary of transferred files:
[2025-10-12 20:44:47] 2025-10-13 00:43:57,346 | INFO     |  -- lfn=log.46676269._087626.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 20:44:47] 2025-10-13 00:43:57,347 | INFO     | stage-out finished correctly
[2025-10-12 20:44:47] 2025-10-13 00:43:58,988 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 20:44:47] 2025-10-13 00:43:59,260 | INFO     | time since job start (4165s) is within the limit (172800.0s)
[2025-10-12 20:44:47] 2025-10-13 00:43:59,722 | INFO     | monitor loop #311: job 0:6840713304 is in state 'finished'
[2025-10-12 20:44:47] 2025-10-13 00:43:59,722 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:44:47] 2025-10-13 00:44:00,118 | INFO     | job 6840713304 has state=finished
[2025-10-12 20:44:47] 2025-10-13 00:44:00,118 | INFO     | preparing for final server update for job 6840713304 in state='finished'
[2025-10-12 20:44:47] 2025-10-13 00:44:00,119 | INFO     | this job has now completed (state=finished)
[2025-10-12 20:44:47] 2025-10-13 00:44:00,119 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 20:44:47] 2025-10-13 00:44:00,119 | INFO     | log transfer has been attempted: DONE
[2025-10-12 20:44:47] 2025-10-13 00:44:00,119 | INFO     | job 6840713304 has finished - writing final server update
[2025-10-12 20:44:47] 2025-10-13 00:44:00,120 | INFO     | total number of processed events: 400 (read)
[2025-10-12 20:44:47] 2025-10-13 00:44:00,121 | INFO     | executing command: lscpu
[2025-10-12 20:44:47] 2025-10-13 00:44:00,147 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 20:44:47] 2025-10-13 00:44:01,265 | INFO     | time since job start (4167s) is within the limit (172800.0s)
[2025-10-12 20:44:47] 2025-10-13 00:44:02,241 | INFO     | monitor loop #312: job 0:6840713304 is in state 'finished'
[2025-10-12 20:44:47] 2025-10-13 00:44:02,241 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:44:47] 2025-10-13 00:44:03,271 | INFO     | time since job start (4169s) is within the limit (172800.0s)
[2025-10-12 20:44:47] 2025-10-13 00:44:04,390 | INFO     | PID=18740 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 20:44:47] 2025-10-13 00:44:04,744 | INFO     | monitor loop #313: job 0:6840713304 is in state 'finished'
[2025-10-12 20:44:47] 2025-10-13 00:44:04,744 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:44:47] 2025-10-13 00:44:04,841 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 20:44:47] 2025-10-13 00:44:04,844 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-12 20:44:47] 2025-10-13 00:44:04,845 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840713304/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 20:44:47] 2025-10-13 00:44:04,846 | INFO     | extracted standard info from prmon json
[2025-10-12 20:44:47] 2025-10-13 00:44:04,846 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 20:44:47] 2025-10-13 00:44:04,846 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 20:44:47] 2025-10-13 00:44:04,846 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 20:44:47] 2025-10-13 00:44:04,846 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 20:44:47] 2025-10-13 00:44:04,848 | INFO     | fitting pss+swap vs Time
[2025-10-12 20:44:47] 2025-10-13 00:44:04,848 | INFO     | sum of square deviations: 70364110.0
[2025-10-12 20:44:47] 2025-10-13 00:44:04,849 | INFO     | sum of deviations: -5627682794.999997
[2025-10-12 20:44:47] 2025-10-13 00:44:04,849 | INFO     | mean x: 1760314238.0
[2025-10-12 20:44:47] 2025-10-13 00:44:04,849 | INFO     | mean y: 2847600.655737705
[2025-10-12 20:44:47] 2025-10-13 00:44:04,849 | INFO     | -- intersect: 140791811619.1892
[2025-10-12 20:44:47] 2025-10-13 00:44:04,849 | INFO     | intersect: 140791811619.1892
[2025-10-12 20:44:47] 2025-10-13 00:44:04,849 | INFO     | chi2: 0.0960999754042648
[2025-10-12 20:44:47] 2025-10-13 00:44:04,849 | INFO     | -- intersect: 140791811619.1892
[2025-10-12 20:44:47] 2025-10-13 00:44:04,850 | INFO     | current memory leak: -79.98 B/s (using 61 data points, chi2=0.10)
[2025-10-12 20:44:47] 2025-10-13 00:44:04,850 | INFO     | could have reported an average CPU frequency of 2028 MHz (6 samples)
[2025-10-12 20:44:47] 2025-10-13 00:44:04,850 | INFO     | ..............................
[2025-10-12 20:44:47] 2025-10-13 00:44:04,850 | INFO     | . Timing measurements:
[2025-10-12 20:44:47] 2025-10-13 00:44:04,850 | INFO     | . get job = 0 s
[2025-10-12 20:44:47] 2025-10-13 00:44:04,850 | INFO     | . initial setup = 2 s
[2025-10-12 20:44:47] 2025-10-13 00:44:04,851 | INFO     | . payload setup = 7 s
[2025-10-12 20:44:47] 2025-10-13 00:44:04,851 | INFO     | . stage-in = 0 s
[2025-10-12 20:44:47] 2025-10-13 00:44:04,851 | INFO     | . payload execution = 4134 s
[2025-10-12 20:44:47] 2025-10-13 00:44:04,851 | INFO     | . stage-out = 0 s
[2025-10-12 20:44:47] 2025-10-13 00:44:04,851 | INFO     | . log creation = 0 s
[2025-10-12 20:44:47] 2025-10-13 00:44:04,851 | INFO     | ..............................
[2025-10-12 20:44:47] 2025-10-13 00:44:05,293 | INFO     | 
[2025-10-12 20:44:47] 2025-10-13 00:44:05,294 | INFO     | job summary report
[2025-10-12 20:44:47] 2025-10-13 00:44:05,294 | INFO     | --------------------------------------------------
[2025-10-12 20:44:47] 2025-10-13 00:44:05,294 | INFO     | PanDA job id: 6840713304
[2025-10-12 20:44:47] 2025-10-13 00:44:05,294 | INFO     | task id: 46676269
[2025-10-12 20:44:47] 2025-10-13 00:44:05,294 | INFO     | errors: (none)
[2025-10-12 20:44:47] 2025-10-13 00:44:05,294 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 20:44:47] 2025-10-13 00:44:05,295 | INFO     | pilot state: finished 
[2025-10-12 20:44:47] 2025-10-13 00:44:05,295 | INFO     | transexitcode: 0
[2025-10-12 20:44:47] 2025-10-13 00:44:05,295 | INFO     | exeerrorcode: 0
[2025-10-12 20:44:47] 2025-10-13 00:44:05,295 | INFO     | exeerrordiag: 
[2025-10-12 20:44:47] 2025-10-13 00:44:05,295 | INFO     | exitcode: 0
[2025-10-12 20:44:47] 2025-10-13 00:44:05,295 | INFO     | exitmsg: OK
[2025-10-12 20:44:47] 2025-10-13 00:44:05,296 | INFO     | cpuconsumptiontime: 44828 s
[2025-10-12 20:44:47] 2025-10-13 00:44:05,296 | INFO     | nevents: 400
[2025-10-12 20:44:47] 2025-10-13 00:44:05,296 | INFO     | neventsw: 0
[2025-10-12 20:44:47] 2025-10-13 00:44:05,296 | INFO     | pid: 26084
[2025-10-12 20:44:47] 2025-10-13 00:44:05,296 | INFO     | pgrp: 26084
[2025-10-12 20:44:47] 2025-10-13 00:44:05,296 | INFO     | corecount: 12
[2025-10-12 20:44:47] 2025-10-13 00:44:05,297 | INFO     | event service: False
[2025-10-12 20:44:47] 2025-10-13 00:44:05,297 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4144: 2375043, 4147: 2384041, 4148: 2384097, 4154: 2384419}
[2025-10-12 20:44:47] 2025-10-13 00:44:05,297 | INFO     | --------------------------------------------------
[2025-10-12 20:44:47] 2025-10-13 00:44:05,297 | INFO     | 
[2025-10-12 20:44:47] 2025-10-13 00:44:05,297 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 20:44:47] 2025-10-13 00:44:05,325 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,325 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,325 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,326 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,326 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,326 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,326 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,326 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,326 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,327 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,327 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,327 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,327 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,327 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,327 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,327 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,328 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,328 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 20:44:47] 2025-10-13 00:44:05,328 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,328 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 20:44:47] 2025-10-13 00:44:05,328 | INFO     | job 6840713304 has completed (purged errors)
[2025-10-12 20:44:47] 2025-10-13 00:44:05,328 | INFO     | overall cleanup function is called
[2025-10-12 20:44:47] 2025-10-13 00:44:06,337 | INFO     | --- collectZombieJob: --- 10, [26084]
[2025-10-12 20:44:47] 2025-10-13 00:44:06,337 | INFO     | zombie collector waiting for pid 26084
[2025-10-12 20:44:47] 2025-10-13 00:44:06,337 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:44:47] 2025-10-13 00:44:06,337 | INFO     | collected zombie processes
[2025-10-12 20:44:47] 2025-10-13 00:44:06,337 | INFO     | will attempt to kill all subprocesses of pid=26084
[2025-10-12 20:44:47] 2025-10-13 00:44:06,428 | INFO     | process IDs to be killed: [26084] (in reverse order)
[2025-10-12 20:44:47] 2025-10-13 00:44:06,479 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:44:47] 2025-10-13 00:44:06,480 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:44:47] 2025-10-13 00:44:06,483 | INFO     | did not find any defunct processes belonging to 26084
[2025-10-12 20:44:47] 2025-10-13 00:44:06,486 | INFO     | did not find any defunct processes belonging to 26084
[2025-10-12 20:44:47] 2025-10-13 00:44:06,486 | INFO     | ready for new job
[2025-10-12 20:44:47] 2025-10-13 00:44:06,486 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:44:47] 2025-10-13 00:44:06,488 | INFO     | ***************************************
[2025-10-12 20:44:47] 2025-10-13 00:44:06,488 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:44:47] 2025-10-13 00:44:06,488 | INFO     | ***************************************
[2025-10-12 20:44:47] 2025-10-13 00:44:06,488 | INFO     | 
[2025-10-12 20:44:47] 2025-10-13 00:44:06,489 | INFO     | architecture information:
[2025-10-12 20:44:47] 2025-10-13 00:44:06,489 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:44:47] 2025-10-13 00:44:06,504 | INFO     | cat /etc/os-release:
[2025-10-12 20:44:47] NAME="CentOS Linux"
[2025-10-12 20:44:47] VERSION="7 (Core)"
[2025-10-12 20:44:47] ID="centos"
[2025-10-12 20:44:47] ID_LIKE="rhel fedora"
[2025-10-12 20:44:47] VERSION_ID="7"
[2025-10-12 20:44:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:44:47] ANSI_COLOR="0;31"
[2025-10-12 20:44:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:44:47] HOME_URL="https://www.centos.org/"
[2025-10-12 20:44:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:44:47] 
[2025-10-12 20:44:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:44:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:44:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:44:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:44:47] 
[2025-10-12 20:44:47] 2025-10-13 00:44:06,504 | INFO     | ***************************************
[2025-10-12 20:44:47] 2025-10-13 00:44:07,007 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 20:44:47] 2025-10-13 00:44:07,025 | INFO     | sufficient remaining disk space (29499588608 B)
[2025-10-12 20:44:47] 2025-10-13 00:44:07,025 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:44:47] 2025-10-13 00:44:07,026 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:44:47] 2025-10-13 00:44:07,026 | INFO     | update_server=False
[2025-10-12 20:44:47] 2025-10-13 00:44:07,026 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:44:47] 2025-10-13 00:44:07,250 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 20:44:47] 2025-10-13 00:44:07,251 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 20:44:47] 2025-10-13 00:44:07,251 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:44:47] 2025-10-13 00:44:07,251 | INFO     | will abort loop
[2025-10-12 20:44:47] 2025-10-13 00:44:07,352 | INFO     | all payload control threads have been joined
[2025-10-12 20:44:47] 2025-10-13 00:44:07,500 | INFO     | all data control threads have been joined
[2025-10-12 20:44:47] 2025-10-13 00:44:07,946 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:44:47] 2025-10-13 00:44:08,032 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:44:47] 2025-10-13 00:44:08,046 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:44:47] 2025-10-13 00:44:08,151 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:44:47] 2025-10-13 00:44:08,154 | INFO     | [job] validate thread has finished
[2025-10-12 20:44:47] 2025-10-13 00:44:08,157 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:44:47] 2025-10-13 00:44:08,255 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:44:47] 2025-10-13 00:44:08,357 | INFO     | [payload] control thread has finished
[2025-10-12 20:44:47] 2025-10-13 00:44:08,358 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:44:47] 2025-10-13 00:44:08,505 | INFO     | [data] control thread has finished
[2025-10-12 20:44:47] 2025-10-13 00:44:08,535 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:44:47] 2025-10-13 00:44:08,717 | INFO     | all job control threads have been joined
[2025-10-12 20:44:47] 2025-10-13 00:44:09,060 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:44:47] 2025-10-13 00:44:09,576 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:44:47] 2025-10-13 00:44:09,723 | INFO     | [job] control thread has finished
[2025-10-12 20:44:47] 2025-10-13 00:44:09,943 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:44:47] 2025-10-13 00:44:09,951 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:44:47] 2025-10-13 00:44:10,958 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:44:47] 2025-10-13 00:44:13,582 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:44:47] 2025-10-13 00:44:17,809 | INFO     | job.realtimelogging is not enabled
[2025-10-12 20:44:47] 2025-10-13 00:44:18,814 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:44:47] 2025-10-13 00:44:36,579 | INFO     | PID=18740 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 20:44:47] 2025-10-13 00:44:36,579 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:44:47] 2025-10-13 00:44:36,579 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:44:47] 2025-10-13 00:44:36,580 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:44:47] 2025-10-13 00:44:40,614 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:44:47] 2025-10-13 00:44:41,766 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140011281536832)>', '<ExcThread(monitor, started 140010598676224)>']
[2025-10-12 20:44:47] 2025-10-13 00:44:42,609 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:44:47] 2025-10-13 00:44:42,609 | INFO     | [monitor] control thread has ended
[2025-10-12 20:44:47] 2025-10-13 00:44:46,790 | INFO     | all workflow threads have been joined
[2025-10-12 20:44:47] 2025-10-13 00:44:46,790 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:44:47] 2025-10-13 00:44:46,800 | INFO     | traces error code: 0
[2025-10-12 20:44:47] 2025-10-13 00:44:46,800 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:44:47] 2025-10-13 00:44:46,884 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:44:47] 2025-10-13 00:44:46,888 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:44:47] 2025-10-13 00:44:46,892 [wrapper] pilotpid: 18740
[2025-10-12 20:44:47] 2025-10-13 00:44:46,896 [wrapper] Pilot exit status: 0
[2025-10-12 20:44:47] 2025-10-13 00:44:46,911 [wrapper] pandaids: 6840713304
[2025-10-12 20:44:47] 2025-10-13 00:44:46,951 [wrapper] cleanup supervisor_pilot 30637 18741
[2025-10-12 20:44:47] 2025-10-13 00:44:46,955 [wrapper] Test setup, not cleaning
[2025-10-12 20:44:47] 2025-10-13 00:44:46,959 [wrapper] apfmon messages muted
[2025-10-12 20:44:47] 2025-10-13 00:44:46,963 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:44:47] 2025-10-13 00:44:46,967 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:44:47]  *** Error codes and diagnostics ***
[2025-10-12 20:44:47]     "exeErrorCode": 0,
[2025-10-12 20:44:47]     "exeErrorDiag": "",
[2025-10-12 20:44:47]     "pilotErrorCode": 0,
[2025-10-12 20:44:47]     "pilotErrorDiag": "",
[2025-10-12 20:44:47]  *** Listing of results directory ***
[2025-10-12 20:44:47] total 403004
[2025-10-12 20:44:47] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 15:28 pilot3.tar.gz
[2025-10-12 20:44:47] -rwx------ 1 boincer umatlas     36292 Oct 12 15:35 runpilot2-wrapper.sh
[2025-10-12 20:44:47] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 15:35 queuedata.json
[2025-10-12 20:44:47] -rw-r--r-- 1 boincer umatlas       100 Oct 12 19:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:44:47] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 19:34 run_atlas
[2025-10-12 20:44:47] -rw-r--r-- 1 boincer umatlas       105 Oct 12 19:34 job.xml
[2025-10-12 20:44:47] -rw-r--r-- 2 boincer umatlas 220097463 Oct 12 19:34 EVNT.46676267._004459.pool.root.1
[2025-10-12 20:44:47] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 19:34 start_atlas.sh
[2025-10-12 20:44:47] drwxrwx--x 2 boincer umatlas      4096 Oct 12 19:34 shared
[2025-10-12 20:44:47] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 19:34 input.tar.gz
[2025-10-12 20:44:47] -rw-r--r-- 1 boincer umatlas         0 Oct 12 19:34 boinc_lockfile
[2025-10-12 20:44:47] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 19:34 pandaJob.out
[2025-10-12 20:44:47] -rw------- 1 boincer umatlas    975603 Oct 12 19:34 agis_schedconf.cvmfs.json
[2025-10-12 20:44:47] -rw------- 1 boincer umatlas   1560580 Oct 12 19:34 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:44:47] drwx------ 5 boincer umatlas      4096 Oct 12 19:34 pilot3
[2025-10-12 20:44:47] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 20:36 init_data.xml
[2025-10-12 20:44:47] -rw------- 1 boincer umatlas 186685793 Oct 12 20:43 HITS.46676269._087626.pool.root.1
[2025-10-12 20:44:47] -rw------- 1 boincer umatlas      1049 Oct 12 20:43 memory_monitor_summary.json
[2025-10-12 20:44:47] -rw-r--r-- 1 boincer umatlas       530 Oct 12 20:43 boinc_task_state.xml
[2025-10-12 20:44:47] -rw------- 1 boincer umatlas    387357 Oct 12 20:43 log.46676269._087626.job.log.tgz.1
[2025-10-12 20:44:47] -rw------- 1 boincer umatlas      7854 Oct 12 20:44 heartbeat.json
[2025-10-12 20:44:47] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 20:44 boinc_mmap_file
[2025-10-12 20:44:47] -rw-r--r-- 1 boincer umatlas        27 Oct 12 20:44 wrapper_checkpoint.txt
[2025-10-12 20:44:47] -rw------- 1 boincer umatlas        95 Oct 12 20:44 pilot_heartbeat.json
[2025-10-12 20:44:47] -rw------- 1 boincer umatlas      5004 Oct 12 20:44 pilotlog.txt
[2025-10-12 20:44:47] -rw------- 1 boincer umatlas    609184 Oct 12 20:44 log.46676269._087626.job.log.1
[2025-10-12 20:44:47] -rw------- 1 boincer umatlas       357 Oct 12 20:44 output.list
[2025-10-12 20:44:47] -rw-r--r-- 1 boincer umatlas       620 Oct 12 20:44 runtime_log
[2025-10-12 20:44:47] -rw------- 1 boincer umatlas   1013760 Oct 12 20:44 result.tar.gz
[2025-10-12 20:44:47] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 20:44 runtime_log.err
[2025-10-12 20:44:47] -rw------- 1 boincer umatlas       658 Oct 12 20:44 AJeNDmo1GS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmPqUMDm1ookjn.diag
[2025-10-12 20:44:47] -rw-r--r-- 1 boincer umatlas     22067 Oct 12 20:44 stderr.txt
[2025-10-12 20:44:47] HITS file was successfully produced:
[2025-10-12 20:44:47] -rw------- 1 boincer umatlas 186685793 Oct 12 20:43 shared/HITS.pool.root.1
[2025-10-12 20:44:47]  *** Contents of shared directory: ***
[2025-10-12 20:44:47] total 398824
[2025-10-12 20:44:47] -rw-r--r-- 2 boincer umatlas 220097463 Oct 12 19:34 ATLAS.root_0
[2025-10-12 20:44:47] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 19:34 start_atlas.sh
[2025-10-12 20:44:47] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 19:34 input.tar.gz
[2025-10-12 20:44:47] -rw------- 1 boincer umatlas 186685793 Oct 12 20:43 HITS.pool.root.1
[2025-10-12 20:44:47] -rw------- 1 boincer umatlas   1013760 Oct 12 20:44 result.tar.gz
20:44:48 (15045): run_atlas exited; CPU time 44808.464700
20:44:48 (15045): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN