Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:27:06 (3967435): wrapper (7.7.26015): starting
19:27:06 (3967435): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 19:27:06] Arguments: --nthreads 9
[2025-10-12 19:27:06] Threads: 9
[2025-10-12 19:27:06] Checking for CVMFS
[2025-10-12 19:27:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:27:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:27:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:27:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:27:07] 2.13.2.0 1643581 129919 533084 151594 -1663 1428 40518714 40960000 41756 16776704 0 483129523 99.778 291543092 17548 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 19:27:07] CVMFS is ok
[2025-10-12 19:27:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:27:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:27:07] Further information can be found at the LHC@home message board.
[2025-10-12 19:27:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:27:07] Checking for apptainer binary...
[2025-10-12 19:27:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:27:07] Running /usr/bin/apptainer --version
[2025-10-12 19:27:07] apptainer version 1.4.3-1.el9
[2025-10-12 19:27:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:27:08] c7-3-35.aglt2.org
[2025-10-12 19:27:08] apptainer works
[2025-10-12 19:27:08] Set ATHENA_PROC_NUMBER=9
[2025-10-12 19:27:08] Set ATHENA_CORE_NUMBER=9
[2025-10-12 19:27:08] Starting ATLAS job with PandaID=6840429815
[2025-10-12 19:27:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:32:06]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:32:06] 2025-10-13 03:30:57,189 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840429815/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:32:06] 2025-10-13 03:30:57,190 | INFO     | extracted standard info from prmon json
[2025-10-12 23:32:06] 2025-10-13 03:30:57,190 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:32:06] 2025-10-13 03:30:57,190 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:32:06] 2025-10-13 03:30:57,190 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:32:06] 2025-10-13 03:30:57,190 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:32:06] 2025-10-13 03:30:57,212 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:32:06] 2025-10-13 03:30:57,212 | INFO     | sum of square deviations: 4233013644.9288883
[2025-10-12 23:32:06] 2025-10-13 03:30:57,213 | INFO     | sum of deviations: 65959147912.092064
[2025-10-12 23:32:06] 2025-10-13 03:30:57,213 | INFO     | mean x: 1760318966.0669456
[2025-10-12 23:32:06] 2025-10-13 03:30:57,213 | INFO     | mean y: 2486294.619246862
[2025-10-12 23:32:06] 2025-10-13 03:30:57,213 | INFO     | -- intersect: -27426940774.289055
[2025-10-12 23:32:06] 2025-10-13 03:30:57,213 | INFO     | intersect: -27426940774.289055
[2025-10-12 23:32:06] 2025-10-13 03:30:57,214 | INFO     | chi2: 3.398302631763448
[2025-10-12 23:32:06] 2025-10-13 03:30:57,214 | INFO     | sum of square deviations: 3972855507.4060035
[2025-10-12 23:32:06] 2025-10-13 03:30:57,227 | INFO     | sum of deviations: 80489031231.94447
[2025-10-12 23:32:06] 2025-10-13 03:30:57,227 | INFO     | mean x: 1760318813.568376
[2025-10-12 23:32:06] 2025-10-13 03:30:57,227 | INFO     | mean y: 2494647.722222222
[2025-10-12 23:32:06] 2025-10-13 03:30:57,227 | INFO     | -- intersect: -35661111969.573494
[2025-10-12 23:32:06] 2025-10-13 03:30:57,228 | INFO     | intersect: -35661111969.573494
[2025-10-12 23:32:06] 2025-10-13 03:30:57,229 | INFO     | chi2: 2.5991044830242838
[2025-10-12 23:32:06] 2025-10-13 03:30:57,229 | INFO     | current chi2=2.5991044830242838 (change=23.5175684846068 %)
[2025-10-12 23:32:06] 2025-10-13 03:30:57,229 | INFO     | right removable region: 233
[2025-10-12 23:32:06] 2025-10-13 03:30:57,230 | INFO     | sum of square deviations: 3972845747.4060035
[2025-10-12 23:32:06] 2025-10-13 03:30:57,234 | INFO     | sum of deviations: 8060941359.423082
[2025-10-12 23:32:06] 2025-10-13 03:30:57,234 | INFO     | mean x: 1760319118.568376
[2025-10-12 23:32:06] 2025-10-13 03:30:57,234 | INFO     | mean y: 2520064.1923076925
[2025-10-12 23:32:06] 2025-10-13 03:30:57,237 | INFO     | -- intersect: -3569183971.363565
[2025-10-12 23:32:06] 2025-10-13 03:30:57,238 | INFO     | intersect: -3569183971.363565
[2025-10-12 23:32:06] 2025-10-13 03:30:57,238 | INFO     | chi2: 0.9259971387449273
[2025-10-12 23:32:06] 2025-10-13 03:30:57,239 | INFO     | current chi2=0.9259971387449273 (change=72.7511867221664 %)
[2025-10-12 23:32:06] 2025-10-13 03:30:57,239 | INFO     | sum of square deviations: 3723561774.8820963
[2025-10-12 23:32:06] 2025-10-13 03:30:57,243 | INFO     | sum of deviations: -2855033343.6681213
[2025-10-12 23:32:06] 2025-10-13 03:30:57,244 | INFO     | mean x: 1760319271.069869
[2025-10-12 23:32:06] 2025-10-13 03:30:57,244 | INFO     | mean y: 2526699.729257642
[2025-10-12 23:32:06] 2025-10-13 03:30:57,244 | INFO     | -- intersect: 1352247885.5863595
[2025-10-12 23:32:06] 2025-10-13 03:30:57,244 | INFO     | intersect: 1352247885.5863595
[2025-10-12 23:32:06] 2025-10-13 03:30:57,244 | INFO     | chi2: 0.8377007313624892
[2025-10-12 23:32:06] 2025-10-13 03:30:57,244 | INFO     | current chi2=0.8377007313624892 (change=9.535278640505599 %)
[2025-10-12 23:32:06] 2025-10-13 03:30:57,244 | INFO     | left removable region: 20
[2025-10-12 23:32:06] 2025-10-13 03:30:57,244 | INFO     | sum of square deviations: 2996309037.9436674
[2025-10-12 23:32:06] 2025-10-13 03:30:57,245 | INFO     | sum of deviations: 8425534247.774647
[2025-10-12 23:32:06] 2025-10-13 03:30:57,246 | INFO     | mean x: 1760319393.0704226
[2025-10-12 23:32:06] 2025-10-13 03:30:57,246 | INFO     | mean y: 2538823.2816901407
[2025-10-12 23:32:06] 2025-10-13 03:30:57,246 | INFO     | -- intersect: -4947428334.8174305
[2025-10-12 23:32:06] 2025-10-13 03:30:57,246 | INFO     | intersect: -4947428334.8174305
[2025-10-12 23:32:06] 2025-10-13 03:30:57,246 | INFO     | chi2: 0.006673041962702134
[2025-10-12 23:32:06] 2025-10-13 03:30:57,246 | INFO     | -- intersect: -4947428334.8174305
[2025-10-12 23:32:06] 2025-10-13 03:30:57,273 | INFO     | current memory leak: 2.81 B/s (using 213 data points, chi2=0.01)
[2025-10-12 23:32:06] 2025-10-13 03:30:57,275 | INFO     | could have reported an average CPU frequency of 3234 MHz (12 samples)
[2025-10-12 23:32:06] 2025-10-13 03:30:57,275 | INFO     | ..............................
[2025-10-12 23:32:06] 2025-10-13 03:30:57,275 | INFO     | . Timing measurements:
[2025-10-12 23:32:06] 2025-10-13 03:30:57,275 | INFO     | . get job = 0 s
[2025-10-12 23:32:06] 2025-10-13 03:30:57,275 | INFO     | . initial setup = 3 s
[2025-10-12 23:32:06] 2025-10-13 03:30:57,275 | INFO     | . payload setup = 18 s
[2025-10-12 23:32:06] 2025-10-13 03:30:57,277 | INFO     | . stage-in = 0 s
[2025-10-12 23:32:06] 2025-10-13 03:30:57,277 | INFO     | . payload execution = 14539 s
[2025-10-12 23:32:06] 2025-10-13 03:30:57,277 | INFO     | . stage-out = 3 s
[2025-10-12 23:32:06] 2025-10-13 03:30:57,277 | INFO     | . log creation = 0 s
[2025-10-12 23:32:06] 2025-10-13 03:30:57,277 | INFO     | ..............................
[2025-10-12 23:32:06] 2025-10-13 03:30:57,557 | INFO     | 
[2025-10-12 23:32:06] 2025-10-13 03:30:57,557 | INFO     | job summary report
[2025-10-12 23:32:06] 2025-10-13 03:30:57,557 | INFO     | --------------------------------------------------
[2025-10-12 23:32:06] 2025-10-13 03:30:57,557 | INFO     | PanDA job id: 6840429815
[2025-10-12 23:32:06] 2025-10-13 03:30:57,557 | INFO     | task id: 46676269
[2025-10-12 23:32:06] 2025-10-13 03:30:57,557 | INFO     | errors: (none)
[2025-10-12 23:32:06] 2025-10-13 03:30:57,557 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:32:06] 2025-10-13 03:30:57,557 | INFO     | pilot state: finished 
[2025-10-12 23:32:06] 2025-10-13 03:30:57,557 | INFO     | transexitcode: 0
[2025-10-12 23:32:06] 2025-10-13 03:30:57,557 | INFO     | exeerrorcode: 0
[2025-10-12 23:32:06] 2025-10-13 03:30:57,557 | INFO     | exeerrordiag: 
[2025-10-12 23:32:06] 2025-10-13 03:30:57,557 | INFO     | exitcode: 0
[2025-10-12 23:32:06] 2025-10-13 03:30:57,557 | INFO     | exitmsg: OK
[2025-10-12 23:32:06] 2025-10-13 03:30:57,557 | INFO     | cpuconsumptiontime: 34408 s
[2025-10-12 23:32:06] 2025-10-13 03:30:57,558 | INFO     | nevents: 400
[2025-10-12 23:32:06] 2025-10-13 03:30:57,558 | INFO     | neventsw: 0
[2025-10-12 23:32:06] 2025-10-13 03:30:57,558 | INFO     | pid: 3987510
[2025-10-12 23:32:06] 2025-10-13 03:30:57,558 | INFO     | pgrp: 3987510
[2025-10-12 23:32:06] 2025-10-13 03:30:57,558 | INFO     | corecount: 9
[2025-10-12 23:32:06] 2025-10-13 03:30:57,558 | INFO     | event service: False
[2025-10-12 23:32:06] 2025-10-13 03:30:57,558 | INFO     | sizes: {0: 2348806, 10: 2349068, 11: 2349096, 14561: 2380171, 14566: 2389225, 14581: 2389363}
[2025-10-12 23:32:06] 2025-10-13 03:30:57,558 | INFO     | --------------------------------------------------
[2025-10-12 23:32:06] 2025-10-13 03:30:57,558 | INFO     | 
[2025-10-12 23:32:06] 2025-10-13 03:30:57,558 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 23:32:06] 2025-10-13 03:30:57,687 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,687 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,687 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,687 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,687 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,687 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,687 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,687 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,687 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,687 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,688 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,688 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,688 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,688 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,688 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,688 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,688 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,688 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:32:06] 2025-10-13 03:30:57,688 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,688 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:32:06] 2025-10-13 03:30:57,688 | INFO     | job 6840429815 has completed (purged errors)
[2025-10-12 23:32:06] 2025-10-13 03:30:57,688 | INFO     | overall cleanup function is called
[2025-10-12 23:32:06] 2025-10-13 03:30:58,225 | INFO     | PID=3979465 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:32:06] 2025-10-13 03:30:58,225 | INFO     | .. there are 52 such processes running
[2025-10-12 23:32:06] 2025-10-13 03:30:58,700 | INFO     | --- collectZombieJob: --- 10, [3987510]
[2025-10-12 23:32:06] 2025-10-13 03:30:58,701 | INFO     | zombie collector waiting for pid 3987510
[2025-10-12 23:32:06] 2025-10-13 03:30:58,701 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:32:06] 2025-10-13 03:30:58,701 | INFO     | collected zombie processes
[2025-10-12 23:32:06] 2025-10-13 03:30:58,701 | INFO     | will attempt to kill all subprocesses of pid=3987510
[2025-10-12 23:32:06] 2025-10-13 03:30:59,937 | INFO     | process IDs to be killed: [3987510] (in reverse order)
[2025-10-12 23:32:06] 2025-10-13 03:31:00,262 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:32:06] 2025-10-13 03:31:00,264 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:32:06] 2025-10-13 03:31:00,342 | INFO     | did not find any defunct processes belonging to 3987510
[2025-10-12 23:32:06] 2025-10-13 03:31:00,378 | INFO     | did not find any defunct processes belonging to 3987510
[2025-10-12 23:32:06] 2025-10-13 03:31:00,378 | INFO     | ready for new job
[2025-10-12 23:32:06] 2025-10-13 03:31:00,378 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:32:06] 2025-10-13 03:31:00,380 | INFO     | ***************************************
[2025-10-12 23:32:06] 2025-10-13 03:31:00,380 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:32:06] 2025-10-13 03:31:00,380 | INFO     | ***************************************
[2025-10-12 23:32:06] 2025-10-13 03:31:00,380 | INFO     | 
[2025-10-12 23:32:06] 2025-10-13 03:31:00,401 | INFO     | architecture information:
[2025-10-12 23:32:06] 2025-10-13 03:31:00,408 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:32:06] 2025-10-13 03:31:00,444 | INFO     | cat /etc/os-release:
[2025-10-12 23:32:06] NAME="CentOS Linux"
[2025-10-12 23:32:06] VERSION="7 (Core)"
[2025-10-12 23:32:06] ID="centos"
[2025-10-12 23:32:06] ID_LIKE="rhel fedora"
[2025-10-12 23:32:06] VERSION_ID="7"
[2025-10-12 23:32:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:32:06] ANSI_COLOR="0;31"
[2025-10-12 23:32:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:32:06] HOME_URL="https://www.centos.org/"
[2025-10-12 23:32:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:32:06] 
[2025-10-12 23:32:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:32:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:32:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:32:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:32:06] 
[2025-10-12 23:32:06] 2025-10-13 03:31:00,444 | INFO     | ***************************************
[2025-10-12 23:32:06] 2025-10-13 03:31:00,947 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 23:32:06] 2025-10-13 03:31:00,972 | INFO     | sufficient remaining disk space (127135645696 B)
[2025-10-12 23:32:06] 2025-10-13 03:31:00,972 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:32:06] 2025-10-13 03:31:00,972 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:32:06] 2025-10-13 03:31:00,972 | INFO     | update_server=False
[2025-10-12 23:32:06] 2025-10-13 03:31:00,972 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:32:06] 2025-10-13 03:31:01,108 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 23:32:06] 2025-10-13 03:31:01,109 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 23:32:06] 2025-10-13 03:31:01,109 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:32:06] 2025-10-13 03:31:01,109 | INFO     | will abort loop
[2025-10-12 23:32:06] 2025-10-13 03:31:01,143 | INFO     | all payload control threads have been joined
[2025-10-12 23:32:06] 2025-10-13 03:31:01,730 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:32:06] 2025-10-13 03:31:01,819 | INFO     | all data control threads have been joined
[2025-10-12 23:32:06] 2025-10-13 03:31:01,979 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:32:06] 2025-10-13 03:31:02,084 | INFO     | all job control threads have been joined
[2025-10-12 23:32:06] 2025-10-13 03:31:02,138 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:32:06] 2025-10-13 03:31:02,153 | INFO     | [payload] control thread has finished
[2025-10-12 23:32:06] 2025-10-13 03:31:02,203 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:32:06] 2025-10-13 03:31:02,479 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:32:06] 2025-10-13 03:31:02,480 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:32:06] 2025-10-13 03:31:02,481 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:32:06] 2025-10-13 03:31:02,613 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:32:06] 2025-10-13 03:31:02,729 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:32:06] 2025-10-13 03:31:02,839 | INFO     | [data] control thread has finished
[2025-10-12 23:32:06] 2025-10-13 03:31:02,894 | INFO     | [job] validate thread has finished
[2025-10-12 23:32:06] 2025-10-13 03:31:03,090 | INFO     | [job] control thread has finished
[2025-10-12 23:32:06] 2025-10-13 03:31:03,124 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:32:06] 2025-10-13 03:31:03,188 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:32:06] 2025-10-13 03:31:03,620 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:32:06] 2025-10-13 03:31:04,488 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:32:06] 2025-10-13 03:31:05,748 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:32:06] 2025-10-13 03:31:11,476 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:32:06] 2025-10-13 03:31:12,482 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:32:06] 2025-10-13 03:31:31,474 | INFO     | PID=3979465 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:32:06] 2025-10-13 03:31:31,474 | INFO     | .. there are 52 such processes running
[2025-10-12 23:32:06] 2025-10-13 03:31:31,474 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:32:06] 2025-10-13 03:31:31,474 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:32:06] 2025-10-13 03:31:31,474 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:32:06] 2025-10-13 03:31:58,678 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:32:06] 2025-10-13 03:32:00,623 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139654113609536)>', '<ExcThread(monitor, started 139653411763968)>']
[2025-10-12 23:32:06] 2025-10-13 03:32:00,727 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:32:06] 2025-10-13 03:32:00,727 | INFO     | [monitor] control thread has ended
[2025-10-12 23:32:06] 2025-10-13 03:32:05,651 | INFO     | all workflow threads have been joined
[2025-10-12 23:32:06] 2025-10-13 03:32:05,652 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:32:06] 2025-10-13 03:32:05,652 | INFO     | traces error code: 0
[2025-10-12 23:32:06] 2025-10-13 03:32:05,652 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:32:06] 2025-10-13 03:32:06,132 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:32:06] 2025-10-13 03:32:06,137 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:32:06] 2025-10-13 03:32:06,144 [wrapper] pilotpid: 3979465
[2025-10-12 23:32:06] 2025-10-13 03:32:06,154 [wrapper] Pilot exit status: 0
[2025-10-12 23:32:06] 2025-10-13 03:32:06,241 [wrapper] pandaids: 6840429815
[2025-10-12 23:32:06] 2025-10-13 03:32:06,392 [wrapper] cleanup supervisor_pilot  815394 3979466
[2025-10-12 23:32:06] 2025-10-13 03:32:06,396 [wrapper] Test setup, not cleaning
[2025-10-12 23:32:06] 2025-10-13 03:32:06,399 [wrapper] apfmon messages muted
[2025-10-12 23:32:06] 2025-10-13 03:32:06,401 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:32:06] 2025-10-13 03:32:06,404 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:32:06]  *** Error codes and diagnostics ***
[2025-10-12 23:32:06]     "exeErrorCode": 0,
[2025-10-12 23:32:06]     "exeErrorDiag": "",
[2025-10-12 23:32:06]     "pilotErrorCode": 0,
[2025-10-12 23:32:06]     "pilotErrorDiag": "",
[2025-10-12 23:32:06]  *** Listing of results directory ***
[2025-10-12 23:32:06] total 416108
[2025-10-12 23:32:06] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 13:17 pilot3.tar.gz
[2025-10-12 23:32:06] -rwx------. 1 boincer umatlas     36292 Oct 12 13:31 runpilot2-wrapper.sh
[2025-10-12 23:32:06] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 13:31 queuedata.json
[2025-10-12 23:32:06] -rw-r--r--. 1 boincer umatlas       100 Oct 12 19:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:32:06] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 19:27 run_atlas
[2025-10-12 23:32:06] -rw-r--r--. 1 boincer umatlas       105 Oct 12 19:27 job.xml
[2025-10-12 23:32:06] -rw-r--r--. 2 boincer umatlas 220297590 Oct 12 19:27 EVNT.46676267._004822.pool.root.1
[2025-10-12 23:32:06] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 19:27 start_atlas.sh
[2025-10-12 23:32:06] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 19:27 shared
[2025-10-12 23:32:06] -rw-r--r--. 2 boincer umatlas    569675 Oct 12 19:27 input.tar.gz
[2025-10-12 23:32:06] -rw-r--r--. 1 boincer umatlas         0 Oct 12 19:27 boinc_lockfile
[2025-10-12 23:32:06] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 19:27 pandaJob.out
[2025-10-12 23:32:06] -rw-------. 1 boincer umatlas    975512 Oct 12 19:27 agis_schedconf.cvmfs.json
[2025-10-12 23:32:06] drwx------. 5 boincer umatlas      4096 Oct 12 19:27 pilot3
[2025-10-12 23:32:06] -rw-r--r--. 1 boincer umatlas      6938 Oct 12 23:28 init_data.xml
[2025-10-12 23:32:06] -rw-------. 1 boincer umatlas 197061131 Oct 12 23:29 HITS.46676269._084928.pool.root.1
[2025-10-12 23:32:06] -rw-r--r--. 1 boincer umatlas       530 Oct 12 23:29 boinc_task_state.xml
[2025-10-12 23:32:06] -rw-------. 1 boincer umatlas      1048 Oct 12 23:30 memory_monitor_summary.json
[2025-10-12 23:32:06] -rw-------. 1 boincer umatlas   1560580 Oct 12 23:30 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:32:06] -rw-------. 1 boincer umatlas    473715 Oct 12 23:30 log.46676269._084928.job.log.tgz.1
[2025-10-12 23:32:06] -rw-------. 1 boincer umatlas        95 Oct 12 23:30 pilot_heartbeat.json
[2025-10-12 23:32:06] -rw-------. 1 boincer umatlas      7802 Oct 12 23:30 heartbeat.json
[2025-10-12 23:32:06] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 23:32 boinc_mmap_file
[2025-10-12 23:32:06] -rw-r--r--. 1 boincer umatlas        28 Oct 12 23:32 wrapper_checkpoint.txt
[2025-10-12 23:32:06] -rw-------. 1 boincer umatlas      5083 Oct 12 23:32 pilotlog.txt
[2025-10-12 23:32:06] -rw-------. 1 boincer umatlas   1941799 Oct 12 23:32 log.46676269._084928.job.log.1
[2025-10-12 23:32:06] -rw-------. 1 boincer umatlas       357 Oct 12 23:32 output.list
[2025-10-12 23:32:06] -rw-r--r--. 1 boincer umatlas       620 Oct 12 23:32 runtime_log
[2025-10-12 23:32:06] -rw-------. 1 boincer umatlas   2437120 Oct 12 23:32 result.tar.gz
[2025-10-12 23:32:06] -rw-r--r--. 1 boincer umatlas      8699 Oct 12 23:32 runtime_log.err
[2025-10-12 23:32:06] -rw-------. 1 boincer umatlas       657 Oct 12 23:32 DXjMDmS6ES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmptkNDmVn1tlm.diag
[2025-10-12 23:32:06] -rw-r--r--. 1 boincer umatlas     21230 Oct 12 23:32 stderr.txt
[2025-10-12 23:32:06] HITS file was successfully produced:
[2025-10-12 23:32:06] -rw-------. 1 boincer umatlas 197061131 Oct 12 23:29 shared/HITS.pool.root.1
[2025-10-12 23:32:06]  *** Contents of shared directory: ***
[2025-10-12 23:32:06] total 410540
[2025-10-12 23:32:06] -rw-r--r--. 2 boincer umatlas 220297590 Oct 12 19:27 ATLAS.root_0
[2025-10-12 23:32:06] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 19:27 start_atlas.sh
[2025-10-12 23:32:06] -rw-r--r--. 2 boincer umatlas    569675 Oct 12 19:27 input.tar.gz
[2025-10-12 23:32:06] -rw-------. 1 boincer umatlas 197061131 Oct 12 23:29 HITS.pool.root.1
[2025-10-12 23:32:06] -rw-------. 1 boincer umatlas   2437120 Oct 12 23:32 result.tar.gz
23:32:08 (3967435): run_atlas exited; CPU time 34985.951229
23:32:08 (3967435): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN