Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:24:50 (3260086): wrapper (7.7.26015): starting
20:24:50 (3260086): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 20:24:51] Arguments: --nthreads 8
[2025-10-12 20:24:51] Threads: 8
[2025-10-12 20:24:51] Checking for CVMFS
[2025-10-12 20:24:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:24:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:24:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:24:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:24:53] 2.12.6.0 3376676 85635 286032 151642 3 64 15034968 18491392 25530 16776704 0 101488920 99.431 150351602 32019 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 20:24:53] CVMFS is ok
[2025-10-12 20:24:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:24:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:24:53] Further information can be found at the LHC@home message board.
[2025-10-12 20:24:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:24:53] Checking for apptainer binary...
[2025-10-12 20:24:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:24:53] Running /usr/bin/apptainer --version
[2025-10-12 20:24:53] apptainer version 1.4.1-1.el9
[2025-10-12 20:24:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:24:54] c-8-38.aglt2.org
[2025-10-12 20:24:54] apptainer works
[2025-10-12 20:24:54] Set ATHENA_PROC_NUMBER=8
[2025-10-12 20:24:54] Set ATHENA_CORE_NUMBER=8
[2025-10-12 20:24:54] Starting ATLAS job with PandaID=6840713266
[2025-10-12 20:24:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:53:31]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:53:31] 2025-10-13 03:52:55,934 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.149100000001
[2025-10-12 23:53:31] 2025-10-13 03:52:55,941 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840713266/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:53:31] 2025-10-13 03:52:55,942 | INFO     | extracted standard info from prmon json
[2025-10-12 23:53:31] 2025-10-13 03:52:55,942 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:53:31] 2025-10-13 03:52:55,942 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:53:31] 2025-10-13 03:52:55,942 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:53:31] 2025-10-13 03:52:55,943 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:53:31] 2025-10-13 03:52:55,946 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:53:31] 2025-10-13 03:52:55,947 | INFO     | sum of square deviations: 2555713774.618825
[2025-10-12 23:53:31] 2025-10-13 03:52:55,948 | INFO     | sum of deviations: -43373283784.81682
[2025-10-12 23:53:31] 2025-10-13 03:52:55,948 | INFO     | mean x: 1760321407.638614
[2025-10-12 23:53:31] 2025-10-13 03:52:55,948 | INFO     | mean y: 2191602.797029703
[2025-10-12 23:53:31] 2025-10-13 03:52:55,948 | INFO     | -- intersect: 29876788955.697105
[2025-10-12 23:53:31] 2025-10-13 03:52:55,948 | INFO     | intersect: 29876788955.697105
[2025-10-12 23:53:31] 2025-10-13 03:52:55,949 | INFO     | chi2: 3.163270363056894
[2025-10-12 23:53:31] 2025-10-13 03:52:55,949 | INFO     | sum of square deviations: 2370593262.020297
[2025-10-12 23:53:31] 2025-10-13 03:52:55,951 | INFO     | sum of deviations: -28466123949.77664
[2025-10-12 23:53:31] 2025-10-13 03:52:55,951 | INFO     | mean x: 1760321255.142132
[2025-10-12 23:53:31] 2025-10-13 03:52:55,951 | INFO     | mean y: 2203700.5634517767
[2025-10-12 23:53:31] 2025-10-13 03:52:55,951 | INFO     | -- intersect: 21140171079.07416
[2025-10-12 23:53:31] 2025-10-13 03:52:55,951 | INFO     | intersect: 21140171079.07416
[2025-10-12 23:53:31] 2025-10-13 03:52:55,951 | INFO     | chi2: 2.518004995112912
[2025-10-12 23:53:31] 2025-10-13 03:52:55,951 | INFO     | current chi2=2.518004995112912 (change=20.39867902155591 %)
[2025-10-12 23:53:31] 2025-10-13 03:52:55,951 | INFO     | right removable region: 196
[2025-10-12 23:53:31] 2025-10-13 03:52:55,952 | INFO     | sum of square deviations: 2370576182.020297
[2025-10-12 23:53:31] 2025-10-13 03:52:55,953 | INFO     | sum of deviations: -77963895491.21825
[2025-10-12 23:53:31] 2025-10-13 03:52:55,953 | INFO     | mean x: 1760321560.142132
[2025-10-12 23:53:31] 2025-10-13 03:52:55,953 | INFO     | mean y: 2219895.4720812184
[2025-10-12 23:53:31] 2025-10-13 03:52:55,953 | INFO     | -- intersect: 57895962010.47843
[2025-10-12 23:53:31] 2025-10-13 03:52:55,953 | INFO     | intersect: 57895962010.47843
[2025-10-12 23:53:31] 2025-10-13 03:52:55,954 | INFO     | chi2: 1.248700319649546
[2025-10-12 23:53:31] 2025-10-13 03:52:55,954 | INFO     | current chi2=1.248700319649546 (change=60.525020743315864 %)
[2025-10-12 23:53:31] 2025-10-13 03:52:55,954 | INFO     | sum of square deviations: 2194637476.744791
[2025-10-12 23:53:31] 2025-10-13 03:52:55,955 | INFO     | sum of deviations: -80926835719.66147
[2025-10-12 23:53:31] 2025-10-13 03:52:55,955 | INFO     | mean x: 1760321712.6302083
[2025-10-12 23:53:31] 2025-10-13 03:52:55,956 | INFO     | mean y: 2222369.2864583335
[2025-10-12 23:53:31] 2025-10-13 03:52:55,956 | INFO     | -- intersect: 64913747649.11471
[2025-10-12 23:53:31] 2025-10-13 03:52:55,956 | INFO     | intersect: 64913747649.11471
[2025-10-12 23:53:31] 2025-10-13 03:52:55,956 | INFO     | chi2: 1.1177613155386013
[2025-10-12 23:53:31] 2025-10-13 03:52:55,956 | INFO     | current chi2=1.1177613155386013 (change=10.486023111429452 %)
[2025-10-12 23:53:31] 2025-10-13 03:52:55,956 | INFO     | left removable region: 20
[2025-10-12 23:53:31] 2025-10-13 03:52:55,957 | INFO     | sum of square deviations: 1690406108.4488585
[2025-10-12 23:53:31] 2025-10-13 03:52:55,958 | INFO     | sum of deviations: -50859397512.329575
[2025-10-12 23:53:31] 2025-10-13 03:52:55,958 | INFO     | mean x: 1760321834.6420455
[2025-10-12 23:53:31] 2025-10-13 03:52:55,958 | INFO     | mean y: 2222660.6931818184
[2025-10-12 23:53:31] 2025-10-13 03:52:55,958 | INFO     | -- intersect: 52965180786.68229
[2025-10-12 23:53:31] 2025-10-13 03:52:55,958 | INFO     | intersect: 52965180786.68229
[2025-10-12 23:53:31] 2025-10-13 03:52:55,958 | INFO     | chi2: 0.4320548546214614
[2025-10-12 23:53:31] 2025-10-13 03:52:55,959 | INFO     | -- intersect: 52965180786.68229
[2025-10-12 23:53:31] 2025-10-13 03:52:55,959 | INFO     | current memory leak: -30.09 B/s (using 176 data points, chi2=0.43)
[2025-10-12 23:53:31] 2025-10-13 03:52:55,959 | INFO     | could have reported an average CPU frequency of 2600 MHz (10 samples)
[2025-10-12 23:53:31] 2025-10-13 03:52:55,959 | INFO     | ..............................
[2025-10-12 23:53:31] 2025-10-13 03:52:55,959 | INFO     | . Timing measurements:
[2025-10-12 23:53:31] 2025-10-13 03:52:55,960 | INFO     | . get job = 0 s
[2025-10-12 23:53:31] 2025-10-13 03:52:55,960 | INFO     | . initial setup = 4 s
[2025-10-12 23:53:31] 2025-10-13 03:52:55,960 | INFO     | . payload setup = 37 s
[2025-10-12 23:53:31] 2025-10-13 03:52:55,960 | INFO     | . stage-in = 0 s
[2025-10-12 23:53:31] 2025-10-13 03:52:55,960 | INFO     | . payload execution = 12292 s
[2025-10-12 23:53:31] 2025-10-13 03:52:55,960 | INFO     | . stage-out = 3 s
[2025-10-12 23:53:31] 2025-10-13 03:52:55,960 | INFO     | . log creation = 0 s
[2025-10-12 23:53:31] 2025-10-13 03:52:55,960 | INFO     | ..............................
[2025-10-12 23:53:31] 2025-10-13 03:52:56,234 | INFO     | 
[2025-10-12 23:53:31] 2025-10-13 03:52:56,234 | INFO     | job summary report
[2025-10-12 23:53:31] 2025-10-13 03:52:56,235 | INFO     | --------------------------------------------------
[2025-10-12 23:53:31] 2025-10-13 03:52:56,235 | INFO     | PanDA job id: 6840713266
[2025-10-12 23:53:31] 2025-10-13 03:52:56,235 | INFO     | task id: 46676269
[2025-10-12 23:53:31] 2025-10-13 03:52:56,235 | INFO     | errors: (none)
[2025-10-12 23:53:31] 2025-10-13 03:52:56,235 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:53:31] 2025-10-13 03:52:56,235 | INFO     | pilot state: finished 
[2025-10-12 23:53:31] 2025-10-13 03:52:56,235 | INFO     | transexitcode: 0
[2025-10-12 23:53:31] 2025-10-13 03:52:56,235 | INFO     | exeerrorcode: 0
[2025-10-12 23:53:31] 2025-10-13 03:52:56,235 | INFO     | exeerrordiag: 
[2025-10-12 23:53:31] 2025-10-13 03:52:56,236 | INFO     | exitcode: 0
[2025-10-12 23:53:31] 2025-10-13 03:52:56,236 | INFO     | exitmsg: OK
[2025-10-12 23:53:31] 2025-10-13 03:52:56,236 | INFO     | cpuconsumptiontime: 50588 s
[2025-10-12 23:53:31] 2025-10-13 03:52:56,236 | INFO     | nevents: 400
[2025-10-12 23:53:31] 2025-10-13 03:52:56,236 | INFO     | neventsw: 0
[2025-10-12 23:53:31] 2025-10-13 03:52:56,236 | INFO     | pid: 3278052
[2025-10-12 23:53:31] 2025-10-13 03:52:56,236 | INFO     | pgrp: 3278052
[2025-10-12 23:53:31] 2025-10-13 03:52:56,236 | INFO     | corecount: 8
[2025-10-12 23:53:31] 2025-10-13 03:52:56,236 | INFO     | event service: False
[2025-10-12 23:53:31] 2025-10-13 03:52:56,236 | INFO     | sizes: {0: 2348685, 1: 2348884, 12: 2348884, 23: 2348912, 27: 2349202, 34: 2349230, 12333: 2379341, 12334: 2379340, 12338: 2388394, 12340: 2388450, 12363: 2388644}
[2025-10-12 23:53:31] 2025-10-13 03:52:56,237 | INFO     | --------------------------------------------------
[2025-10-12 23:53:31] 2025-10-13 03:52:56,237 | INFO     | 
[2025-10-12 23:53:31] 2025-10-13 03:52:56,237 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 23:53:31] 2025-10-13 03:52:56,333 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,333 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,333 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,333 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,334 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,334 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,334 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,334 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,334 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,334 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,334 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,334 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,334 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,335 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,335 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,335 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,335 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,335 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:53:31] 2025-10-13 03:52:56,335 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,335 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:53:31] 2025-10-13 03:52:56,335 | INFO     | job 6840713266 has completed (purged errors)
[2025-10-12 23:53:31] 2025-10-13 03:52:56,336 | INFO     | overall cleanup function is called
[2025-10-12 23:53:31] 2025-10-13 03:52:57,352 | INFO     | --- collectZombieJob: --- 10, [3278052]
[2025-10-12 23:53:31] 2025-10-13 03:52:57,353 | INFO     | zombie collector waiting for pid 3278052
[2025-10-12 23:53:31] 2025-10-13 03:52:57,353 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:53:31] 2025-10-13 03:52:57,353 | INFO     | collected zombie processes
[2025-10-12 23:53:31] 2025-10-13 03:52:57,353 | INFO     | will attempt to kill all subprocesses of pid=3278052
[2025-10-12 23:53:31] 2025-10-13 03:52:57,793 | INFO     | PID=3269106 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:53:31] 2025-10-13 03:52:57,794 | INFO     | .. there are 36 such processes running
[2025-10-12 23:53:31] 2025-10-13 03:52:58,109 | INFO     | process IDs to be killed: [3278052] (in reverse order)
[2025-10-12 23:53:31] 2025-10-13 03:52:58,345 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:53:31] 2025-10-13 03:52:58,345 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:53:31] 2025-10-13 03:52:58,359 | INFO     | did not find any defunct processes belonging to 3278052
[2025-10-12 23:53:31] 2025-10-13 03:52:58,395 | INFO     | did not find any defunct processes belonging to 3278052
[2025-10-12 23:53:31] 2025-10-13 03:52:58,395 | INFO     | ready for new job
[2025-10-12 23:53:31] 2025-10-13 03:52:58,395 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:53:31] 2025-10-13 03:52:58,401 | INFO     | ***************************************
[2025-10-12 23:53:31] 2025-10-13 03:52:58,401 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:53:31] 2025-10-13 03:52:58,402 | INFO     | ***************************************
[2025-10-12 23:53:31] 2025-10-13 03:52:58,402 | INFO     | 
[2025-10-12 23:53:31] 2025-10-13 03:52:58,404 | INFO     | architecture information:
[2025-10-12 23:53:31] 2025-10-13 03:52:58,412 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:53:31] 2025-10-13 03:52:58,450 | INFO     | cat /etc/os-release:
[2025-10-12 23:53:31] NAME="CentOS Linux"
[2025-10-12 23:53:31] VERSION="7 (Core)"
[2025-10-12 23:53:31] ID="centos"
[2025-10-12 23:53:31] ID_LIKE="rhel fedora"
[2025-10-12 23:53:31] VERSION_ID="7"
[2025-10-12 23:53:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:53:31] ANSI_COLOR="0;31"
[2025-10-12 23:53:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:53:31] HOME_URL="https://www.centos.org/"
[2025-10-12 23:53:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:53:31] 
[2025-10-12 23:53:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:53:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:53:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:53:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:53:31] 
[2025-10-12 23:53:31] 2025-10-13 03:52:58,451 | INFO     | ***************************************
[2025-10-12 23:53:31] 2025-10-13 03:52:58,955 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 23:53:31] 2025-10-13 03:52:59,023 | INFO     | sufficient remaining disk space (95265226752 B)
[2025-10-12 23:53:31] 2025-10-13 03:52:59,023 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:53:31] 2025-10-13 03:52:59,023 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:53:31] 2025-10-13 03:52:59,023 | INFO     | update_server=False
[2025-10-12 23:53:31] 2025-10-13 03:52:59,024 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:53:31] 2025-10-13 03:52:59,024 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:53:31] 2025-10-13 03:52:59,298 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 23:53:31] 2025-10-13 03:52:59,299 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 23:53:31] 2025-10-13 03:52:59,299 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:53:31] 2025-10-13 03:52:59,299 | INFO     | will abort loop
[2025-10-12 23:53:31] 2025-10-13 03:52:59,484 | INFO     | all payload control threads have been joined
[2025-10-12 23:53:31] 2025-10-13 03:52:59,688 | INFO     | all job control threads have been joined
[2025-10-12 23:53:31] 2025-10-13 03:52:59,887 | INFO     | all data control threads have been joined
[2025-10-12 23:53:31] 2025-10-13 03:53:00,029 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:53:31] 2025-10-13 03:53:00,307 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:53:31] 2025-10-13 03:53:00,490 | INFO     | [payload] control thread has finished
[2025-10-12 23:53:31] 2025-10-13 03:53:00,532 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:53:31] 2025-10-13 03:53:00,617 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:53:31] 2025-10-13 03:53:00,622 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:53:31] 2025-10-13 03:53:00,695 | INFO     | [job] control thread has finished
[2025-10-12 23:53:31] 2025-10-13 03:53:00,721 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:53:31] 2025-10-13 03:53:00,893 | INFO     | [data] control thread has finished
[2025-10-12 23:53:31] 2025-10-13 03:53:01,034 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:53:31] 2025-10-13 03:53:01,051 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:53:31] 2025-10-13 03:53:01,052 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:53:31] 2025-10-13 03:53:01,159 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:53:31] 2025-10-13 03:53:01,247 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:53:31] 2025-10-13 03:53:01,483 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:53:31] 2025-10-13 03:53:01,513 | INFO     | [job] validate thread has finished
[2025-10-12 23:53:31] 2025-10-13 03:53:02,271 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:53:31] 2025-10-13 03:53:05,500 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:53:31] 2025-10-13 03:53:14,199 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:53:31] 2025-10-13 03:53:15,159 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139714408134464)>', '<ExcThread(monitor, started 139714027820800)>']
[2025-10-12 23:53:31] 2025-10-13 03:53:20,187 | INFO     | all workflow threads have been joined
[2025-10-12 23:53:31] 2025-10-13 03:53:20,188 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:53:31] 2025-10-13 03:53:20,189 | INFO     | traces error code: 0
[2025-10-12 23:53:31] 2025-10-13 03:53:20,189 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:53:31] 2025-10-13 03:53:30,453 | INFO     | PID=3269106 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:53:31] 2025-10-13 03:53:30,454 | INFO     | .. there are 36 such processes running
[2025-10-12 23:53:31] 2025-10-13 03:53:30,454 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:53:31] 2025-10-13 03:53:30,454 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:53:31] 2025-10-13 03:53:30,454 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:53:31] 2025-10-13 03:53:30,454 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:53:31] 2025-10-13 03:53:30,455 | INFO     | [monitor] control thread has ended
[2025-10-12 23:53:31] 2025-10-13 03:53:30,608 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:53:31] 2025-10-13 03:53:30,611 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:53:31] 2025-10-13 03:53:30,614 [wrapper] pilotpid: 3269106
[2025-10-12 23:53:31] 2025-10-13 03:53:30,617 [wrapper] Pilot exit status: 0
[2025-10-12 23:53:31] 2025-10-13 03:53:30,722 [wrapper] pandaids: 6840713266
[2025-10-12 23:53:31] 2025-10-13 03:53:30,951 [wrapper] cleanup supervisor_pilot 3800075 3269107
[2025-10-12 23:53:31] 2025-10-13 03:53:30,978 [wrapper] Test setup, not cleaning
[2025-10-12 23:53:31] 2025-10-13 03:53:31,012 [wrapper] apfmon messages muted
[2025-10-12 23:53:31] 2025-10-13 03:53:31,032 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:53:31] 2025-10-13 03:53:31,051 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:53:31]  *** Error codes and diagnostics ***
[2025-10-12 23:53:31]     "exeErrorCode": 0,
[2025-10-12 23:53:31]     "exeErrorDiag": "",
[2025-10-12 23:53:31]     "pilotErrorCode": 0,
[2025-10-12 23:53:31]     "pilotErrorDiag": "",
[2025-10-12 23:53:31]  *** Listing of results directory ***
[2025-10-12 23:53:31] total 412536
[2025-10-12 23:53:31] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 15:28 pilot3.tar.gz
[2025-10-12 23:53:31] -rwx------. 1 boincer umatlas     36292 Oct 12 15:32 runpilot2-wrapper.sh
[2025-10-12 23:53:31] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 15:32 queuedata.json
[2025-10-12 23:53:31] -rw-r--r--. 1 boincer umatlas       100 Oct 12 20:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:53:31] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 20:24 run_atlas
[2025-10-12 23:53:31] -rw-r--r--. 1 boincer umatlas       105 Oct 12 20:24 job.xml
[2025-10-12 23:53:31] -rw-r--r--. 2 boincer umatlas 218433266 Oct 12 20:24 EVNT.46676267._004458.pool.root.1
[2025-10-12 23:53:31] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 20:24 start_atlas.sh
[2025-10-12 23:53:31] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 20:24 shared
[2025-10-12 23:53:31] -rw-r--r--. 2 boincer umatlas    569675 Oct 12 20:24 input.tar.gz
[2025-10-12 23:53:31] -rw-r--r--. 1 boincer umatlas         0 Oct 12 20:24 boinc_lockfile
[2025-10-12 23:53:31] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 20:24 pandaJob.out
[2025-10-12 23:53:31] -rw-------. 1 boincer umatlas    975603 Oct 12 20:25 agis_schedconf.cvmfs.json
[2025-10-12 23:53:31] drwx------. 5 boincer umatlas      4096 Oct 12 20:25 pilot3
[2025-10-12 23:53:31] -rw-r--r--. 1 boincer umatlas      6659 Oct 12 23:49 init_data.xml
[2025-10-12 23:53:31] -rw-------. 1 boincer umatlas 195945487 Oct 12 23:51 HITS.46676269._087588.pool.root.1
[2025-10-12 23:53:31] -rw-r--r--. 1 boincer umatlas       531 Oct 12 23:51 boinc_task_state.xml
[2025-10-12 23:53:31] -rw-------. 1 boincer umatlas      1044 Oct 12 23:52 memory_monitor_summary.json
[2025-10-12 23:53:31] -rw-------. 1 boincer umatlas   1560580 Oct 12 23:52 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:53:31] -rw-------. 1 boincer umatlas    430100 Oct 12 23:52 log.46676269._087588.job.log.tgz.1
[2025-10-12 23:53:31] -rw-------. 1 boincer umatlas        95 Oct 12 23:52 pilot_heartbeat.json
[2025-10-12 23:53:31] -rw-------. 1 boincer umatlas      7829 Oct 12 23:52 heartbeat.json
[2025-10-12 23:53:31] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 23:53 boinc_mmap_file
[2025-10-12 23:53:31] -rw-r--r--. 1 boincer umatlas        28 Oct 12 23:53 wrapper_checkpoint.txt
[2025-10-12 23:53:31] -rw-------. 1 boincer umatlas       823 Oct 12 23:53 pilotlog.txt
[2025-10-12 23:53:31] -rw-------. 1 boincer umatlas   1644666 Oct 12 23:53 log.46676269._087588.job.log.1
[2025-10-12 23:53:31] -rw-------. 1 boincer umatlas       357 Oct 12 23:53 output.list
[2025-10-12 23:53:31] -rw-r--r--. 1 boincer umatlas       620 Oct 12 23:53 runtime_log
[2025-10-12 23:53:31] -rw-------. 1 boincer umatlas   2099200 Oct 12 23:53 result.tar.gz
[2025-10-12 23:53:31] -rw-r--r--. 1 boincer umatlas      8694 Oct 12 23:53 runtime_log.err
[2025-10-12 23:53:31] -rw-------. 1 boincer umatlas       652 Oct 12 23:53 B7fLDmsyGS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0HlNDmqapFGo.diag
[2025-10-12 23:53:31] -rw-r--r--. 1 boincer umatlas     21320 Oct 12 23:53 stderr.txt
[2025-10-12 23:53:31] HITS file was successfully produced:
[2025-10-12 23:53:31] -rw-------. 1 boincer umatlas 195945487 Oct 12 23:51 shared/HITS.pool.root.1
[2025-10-12 23:53:31]  *** Contents of shared directory: ***
[2025-10-12 23:53:31] total 407304
[2025-10-12 23:53:31] -rw-r--r--. 2 boincer umatlas 218433266 Oct 12 20:24 ATLAS.root_0
[2025-10-12 23:53:31] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 20:24 start_atlas.sh
[2025-10-12 23:53:31] -rw-r--r--. 2 boincer umatlas    569675 Oct 12 20:24 input.tar.gz
[2025-10-12 23:53:31] -rw-------. 1 boincer umatlas 195945487 Oct 12 23:51 HITS.pool.root.1
[2025-10-12 23:53:31] -rw-------. 1 boincer umatlas   2099200 Oct 12 23:53 result.tar.gz
23:53:33 (3260086): run_atlas exited; CPU time 51145.411680
23:53:33 (3260086): called boinc_finish(0)

</stderr_txt>
]]>

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