Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:28:06 (14458): wrapper (7.7.26015): starting
19:28:06 (14458): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 19:28:06] Arguments: --nthreads 12
[2025-10-12 19:28:06] Threads: 12
[2025-10-12 19:28:06] Checking for CVMFS
[2025-10-12 19:28:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:28:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:28:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:28:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:28:06] 2.11.2.0 2998 223495 103468 151641 1 56 15701463 20275201 1 130560 1 109540836 99.984 13395607 12711 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 19:28:06] CVMFS is ok
[2025-10-12 19:28:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:28:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:28:06] Further information can be found at the LHC@home message board.
[2025-10-12 19:28:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:28:06] Checking for apptainer binary...
[2025-10-12 19:28:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:28:06] Running /usr/bin/apptainer --version
[2025-10-12 19:28:06] apptainer version 1.3.2-1.el7
[2025-10-12 19:28:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:28:08] c-205-25.aglt2.org
[2025-10-12 19:28:08] apptainer works
[2025-10-12 19:28:08] Set ATHENA_PROC_NUMBER=12
[2025-10-12 19:28:08] Set ATHENA_CORE_NUMBER=12
[2025-10-12 19:28:08] Starting ATLAS job with PandaID=6840713332
[2025-10-12 19:28:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:42:36]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:42:36]  protocol_id=None
[2025-10-12 20:42:36]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 20:42:36]  replicas=None
[2025-10-12 20:42:36]  scope=mc23_13p6TeV
[2025-10-12 20:42:36]  status=None
[2025-10-12 20:42:36]  status_code=0
[2025-10-12 20:42:36]  storage_token=
[2025-10-12 20:42:36]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840713332/log.46676269._087654.job.log.tgz.1
[2025-10-12 20:42:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/28/7b/log.46676269._087654.job.log.tgz.1
[2025-10-12 20:42:36]  workdir=None
[2025-10-12 20:42:36] ]
[2025-10-12 20:42:36] 2025-10-13 00:41:51,997 | INFO     | transferring file log.46676269._087654.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840713332/log.46676269._087654.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 20:42:36] 2025-10-13 00:41:51,998 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840713332/log.46676269._087654.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._087654.job
[2025-10-12 20:42:36] 2025-10-13 00:41:52,021 | INFO     | adding to output.list: log.46676269._087654.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/28/7b/log.46676269._087654.job.log.tg
[2025-10-12 20:42:36] 2025-10-13 00:41:52,022 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 20:42:36] 2025-10-13 00:41:52,022 | INFO     | summary of transferred files:
[2025-10-12 20:42:36] 2025-10-13 00:41:52,022 | INFO     |  -- lfn=log.46676269._087654.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 20:42:36] 2025-10-13 00:41:52,023 | INFO     | stage-out finished correctly
[2025-10-12 20:42:36] 2025-10-13 00:41:52,108 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 20:42:36] 2025-10-13 00:41:53,154 | INFO     | time since job start (4410s) is within the limit (172800.0s)
[2025-10-12 20:42:36] 2025-10-13 00:41:53,352 | WARNING  | process 24500 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 20:42:36] 2025-10-13 00:41:53,352 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840713332/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 20:42:36] 2025-10-13 00:41:53,440 | INFO     | number of running child processes to parent process 24500: 1
[2025-10-12 20:42:36] 2025-10-13 00:41:53,440 | INFO     | maximum number of monitored processes: 6
[2025-10-12 20:42:36] 2025-10-13 00:41:53,724 | INFO     | job 6840713332 has state=finished
[2025-10-12 20:42:36] 2025-10-13 00:41:53,724 | INFO     | preparing for final server update for job 6840713332 in state='finished'
[2025-10-12 20:42:36] 2025-10-13 00:41:53,725 | INFO     | this job has now completed (state=finished)
[2025-10-12 20:42:36] 2025-10-13 00:41:53,725 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 20:42:36] 2025-10-13 00:41:53,725 | INFO     | log transfer has been attempted: DONE
[2025-10-12 20:42:36] 2025-10-13 00:41:53,725 | INFO     | job 6840713332 has finished - writing final server update
[2025-10-12 20:42:36] 2025-10-13 00:41:53,726 | INFO     | total number of processed events: 400 (read)
[2025-10-12 20:42:36] 2025-10-13 00:41:53,726 | INFO     | executing command: lscpu
[2025-10-12 20:42:36] 2025-10-13 00:41:53,753 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 20:42:36] 2025-10-13 00:41:55,160 | INFO     | time since job start (4412s) is within the limit (172800.0s)
[2025-10-12 20:42:36] 2025-10-13 00:41:55,943 | INFO     | monitor loop #328: job 0:6840713332 is in state 'finished'
[2025-10-12 20:42:36] 2025-10-13 00:41:55,943 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:42:36] 2025-10-13 00:41:57,165 | INFO     | time since job start (4414s) is within the limit (172800.0s)
[2025-10-12 20:42:36] 2025-10-13 00:41:58,360 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 20:42:36] 2025-10-13 00:41:58,364 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 20:42:36] 2025-10-13 00:41:58,366 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840713332/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 20:42:36] 2025-10-13 00:41:58,366 | INFO     | extracted standard info from prmon json
[2025-10-12 20:42:36] 2025-10-13 00:41:58,366 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 20:42:36] 2025-10-13 00:41:58,366 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 20:42:36] 2025-10-13 00:41:58,367 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 20:42:36] 2025-10-13 00:41:58,367 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 20:42:36] 2025-10-13 00:41:58,368 | INFO     | fitting pss+swap vs Time
[2025-10-12 20:42:36] 2025-10-13 00:41:58,369 | INFO     | sum of square deviations: 85136480.0
[2025-10-12 20:42:36] 2025-10-13 00:41:58,369 | INFO     | sum of deviations: -5278170668.0
[2025-10-12 20:42:36] 2025-10-13 00:41:58,369 | INFO     | mean x: 1760313989.0
[2025-10-12 20:42:36] 2025-10-13 00:41:58,369 | INFO     | mean y: 2875061.0
[2025-10-12 20:42:36] 2025-10-13 00:41:58,369 | INFO     | -- intersect: 109136323650.95667
[2025-10-12 20:42:36] 2025-10-13 00:41:58,369 | INFO     | intersect: 109136323650.95667
[2025-10-12 20:42:36] 2025-10-13 00:41:58,370 | INFO     | chi2: 0.1050971268529472
[2025-10-12 20:42:36] 2025-10-13 00:41:58,370 | INFO     | -- intersect: 109136323650.95667
[2025-10-12 20:42:36] 2025-10-13 00:41:58,370 | INFO     | current memory leak: -62.00 B/s (using 65 data points, chi2=0.11)
[2025-10-12 20:42:36] 2025-10-13 00:41:58,370 | INFO     | could have reported an average CPU frequency of 2043 MHz (6 samples)
[2025-10-12 20:42:36] 2025-10-13 00:41:58,370 | INFO     | ..............................
[2025-10-12 20:42:36] 2025-10-13 00:41:58,370 | INFO     | . Timing measurements:
[2025-10-12 20:42:36] 2025-10-13 00:41:58,371 | INFO     | . get job = 0 s
[2025-10-12 20:42:36] 2025-10-13 00:41:58,371 | INFO     | . initial setup = 2 s
[2025-10-12 20:42:36] 2025-10-13 00:41:58,371 | INFO     | . payload setup = 7 s
[2025-10-12 20:42:36] 2025-10-13 00:41:58,371 | INFO     | . stage-in = 0 s
[2025-10-12 20:42:36] 2025-10-13 00:41:58,371 | INFO     | . payload execution = 4380 s
[2025-10-12 20:42:36] 2025-10-13 00:41:58,371 | INFO     | . stage-out = 0 s
[2025-10-12 20:42:36] 2025-10-13 00:41:58,371 | INFO     | . log creation = 0 s
[2025-10-12 20:42:36] 2025-10-13 00:41:58,371 | INFO     | ..............................
[2025-10-12 20:42:36] 2025-10-13 00:41:58,454 | INFO     | 
[2025-10-12 20:42:36] 2025-10-13 00:41:58,455 | INFO     | job summary report
[2025-10-12 20:42:36] 2025-10-13 00:41:58,455 | INFO     | --------------------------------------------------
[2025-10-12 20:42:36] 2025-10-13 00:41:58,455 | INFO     | PanDA job id: 6840713332
[2025-10-12 20:42:36] 2025-10-13 00:41:58,455 | INFO     | task id: 46676269
[2025-10-12 20:42:36] 2025-10-13 00:41:58,455 | INFO     | errors: (none)
[2025-10-12 20:42:36] 2025-10-13 00:41:58,456 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 20:42:36] 2025-10-13 00:41:58,456 | INFO     | pilot state: finished 
[2025-10-12 20:42:36] 2025-10-13 00:41:58,456 | INFO     | transexitcode: 0
[2025-10-12 20:42:36] 2025-10-13 00:41:58,456 | INFO     | exeerrorcode: 0
[2025-10-12 20:42:36] 2025-10-13 00:41:58,456 | INFO     | exeerrordiag: 
[2025-10-12 20:42:36] 2025-10-13 00:41:58,456 | INFO     | exitcode: 0
[2025-10-12 20:42:36] 2025-10-13 00:41:58,456 | INFO     | exitmsg: OK
[2025-10-12 20:42:36] 2025-10-13 00:41:58,457 | INFO     | cpuconsumptiontime: 47332 s
[2025-10-12 20:42:36] 2025-10-13 00:41:58,457 | INFO     | nevents: 400
[2025-10-12 20:42:36] 2025-10-13 00:41:58,457 | INFO     | neventsw: 0
[2025-10-12 20:42:36] 2025-10-13 00:41:58,457 | INFO     | pid: 24500
[2025-10-12 20:42:36] 2025-10-13 00:41:58,457 | INFO     | pgrp: 24500
[2025-10-12 20:42:36] 2025-10-13 00:41:58,457 | INFO     | corecount: 12
[2025-10-12 20:42:36] 2025-10-13 00:41:58,458 | INFO     | event service: False
[2025-10-12 20:42:36] 2025-10-13 00:41:58,458 | INFO     | sizes: {0: 2348029, 1: 2348885, 6: 2349147, 12: 2349175, 4392: 2375224, 4393: 2384406, 4400: 2384544}
[2025-10-12 20:42:36] 2025-10-13 00:41:58,458 | INFO     | --------------------------------------------------
[2025-10-12 20:42:36] 2025-10-13 00:41:58,458 | INFO     | 
[2025-10-12 20:42:36] 2025-10-13 00:41:58,458 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 20:42:36] 2025-10-13 00:41:58,482 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,483 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,483 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,483 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,483 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,483 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,483 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,484 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,484 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,484 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,484 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,484 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,484 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,485 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,485 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,485 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,485 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 20:42:36] 2025-10-13 00:41:58,485 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,486 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 20:42:36] 2025-10-13 00:41:58,486 | INFO     | job 6840713332 has completed (purged errors)
[2025-10-12 20:42:36] 2025-10-13 00:41:58,486 | INFO     | overall cleanup function is called
[2025-10-12 20:42:36] 2025-10-13 00:41:59,494 | INFO     | --- collectZombieJob: --- 10, [24500]
[2025-10-12 20:42:36] 2025-10-13 00:41:59,494 | INFO     | zombie collector waiting for pid 24500
[2025-10-12 20:42:36] 2025-10-13 00:41:59,494 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:42:36] 2025-10-13 00:41:59,495 | INFO     | collected zombie processes
[2025-10-12 20:42:36] 2025-10-13 00:41:59,495 | INFO     | will attempt to kill all subprocesses of pid=24500
[2025-10-12 20:42:36] 2025-10-13 00:41:59,586 | INFO     | process IDs to be killed: [24500] (in reverse order)
[2025-10-12 20:42:36] 2025-10-13 00:41:59,637 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:42:36] 2025-10-13 00:41:59,637 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:42:36] 2025-10-13 00:41:59,640 | INFO     | did not find any defunct processes belonging to 24500
[2025-10-12 20:42:36] 2025-10-13 00:41:59,643 | INFO     | did not find any defunct processes belonging to 24500
[2025-10-12 20:42:36] 2025-10-13 00:41:59,643 | INFO     | ready for new job
[2025-10-12 20:42:36] 2025-10-13 00:41:59,643 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:42:36] 2025-10-13 00:41:59,644 | INFO     | ***************************************
[2025-10-12 20:42:36] 2025-10-13 00:41:59,644 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:42:36] 2025-10-13 00:41:59,645 | INFO     | ***************************************
[2025-10-12 20:42:36] 2025-10-13 00:41:59,645 | INFO     | 
[2025-10-12 20:42:36] 2025-10-13 00:41:59,645 | INFO     | architecture information:
[2025-10-12 20:42:36] 2025-10-13 00:41:59,646 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:42:36] 2025-10-13 00:41:59,659 | INFO     | cat /etc/os-release:
[2025-10-12 20:42:36] NAME="CentOS Linux"
[2025-10-12 20:42:36] VERSION="7 (Core)"
[2025-10-12 20:42:36] ID="centos"
[2025-10-12 20:42:36] ID_LIKE="rhel fedora"
[2025-10-12 20:42:36] VERSION_ID="7"
[2025-10-12 20:42:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:42:36] ANSI_COLOR="0;31"
[2025-10-12 20:42:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:42:36] HOME_URL="https://www.centos.org/"
[2025-10-12 20:42:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:42:36] 
[2025-10-12 20:42:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:42:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:42:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:42:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:42:36] 
[2025-10-12 20:42:36] 2025-10-13 00:41:59,660 | INFO     | ***************************************
[2025-10-12 20:42:36] 2025-10-13 00:42:00,163 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 20:42:36] 2025-10-13 00:42:00,179 | INFO     | sufficient remaining disk space (29353836544 B)
[2025-10-12 20:42:36] 2025-10-13 00:42:00,179 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:42:36] 2025-10-13 00:42:00,179 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:42:36] 2025-10-13 00:42:00,180 | INFO     | update_server=False
[2025-10-12 20:42:36] 2025-10-13 00:42:00,180 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:42:36] 2025-10-13 00:42:00,180 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:42:36] 2025-10-13 00:42:00,180 | INFO     | aborting loop
[2025-10-12 20:42:36] 2025-10-13 00:42:00,181 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:42:36] 2025-10-13 00:42:00,181 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:42:36] 2025-10-13 00:42:00,629 | INFO     | all payload control threads have been joined
[2025-10-12 20:42:36] 2025-10-13 00:42:00,907 | INFO     | all data control threads have been joined
[2025-10-12 20:42:36] 2025-10-13 00:42:01,185 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:42:36] 2025-10-13 00:42:01,186 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:42:36] 2025-10-13 00:42:01,186 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:42:36] 2025-10-13 00:42:01,388 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:42:36] 2025-10-13 00:42:01,416 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:42:36] 2025-10-13 00:42:01,635 | INFO     | [payload] control thread has finished
[2025-10-12 20:42:36] 2025-10-13 00:42:01,883 | INFO     | all job control threads have been joined
[2025-10-12 20:42:36] 2025-10-13 00:42:01,912 | INFO     | [data] control thread has finished
[2025-10-12 20:42:36] 2025-10-13 00:42:01,996 | INFO     | [job] validate thread has finished
[2025-10-12 20:42:36] 2025-10-13 00:42:02,166 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:42:36] 2025-10-13 00:42:02,186 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:42:36] 2025-10-13 00:42:02,337 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:42:36] 2025-10-13 00:42:02,369 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:42:36] 2025-10-13 00:42:02,416 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:42:36] 2025-10-13 00:42:02,649 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:42:36] 2025-10-13 00:42:02,697 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:42:36] 2025-10-13 00:42:02,888 | INFO     | [job] control thread has finished
[2025-10-12 20:42:36] 2025-10-13 00:42:06,703 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:42:36] 2025-10-13 00:42:29,911 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:42:36] 2025-10-13 00:42:30,368 | INFO     | PID=18148 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 20:42:36] 2025-10-13 00:42:30,369 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:42:36] 2025-10-13 00:42:30,369 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:42:36] 2025-10-13 00:42:30,369 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:42:36] 2025-10-13 00:42:30,839 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140276466399040)>', '<ExcThread(monitor, started 140276031018752)>']
[2025-10-12 20:42:36] 2025-10-13 00:42:31,374 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:42:36] 2025-10-13 00:42:31,374 | INFO     | [monitor] control thread has ended
[2025-10-12 20:42:36] 2025-10-13 00:42:35,853 | INFO     | all workflow threads have been joined
[2025-10-12 20:42:36] 2025-10-13 00:42:35,853 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:42:36] 2025-10-13 00:42:35,853 | INFO     | traces error code: 0
[2025-10-12 20:42:36] 2025-10-13 00:42:35,853 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:42:36] 2025-10-13 00:42:35,940 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:42:36] 2025-10-13 00:42:35,944 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:42:36] 2025-10-13 00:42:35,947 [wrapper] pilotpid: 18148
[2025-10-12 20:42:36] 2025-10-13 00:42:35,951 [wrapper] Pilot exit status: 0
[2025-10-12 20:42:36] 2025-10-13 00:42:35,965 [wrapper] pandaids: 6840713332
[2025-10-12 20:42:36] 2025-10-13 00:42:36,005 [wrapper] cleanup supervisor_pilot 29038 18149
[2025-10-12 20:42:36] 2025-10-13 00:42:36,009 [wrapper] Test setup, not cleaning
[2025-10-12 20:42:36] 2025-10-13 00:42:36,013 [wrapper] apfmon messages muted
[2025-10-12 20:42:36] 2025-10-13 00:42:36,017 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:42:36] 2025-10-13 00:42:36,020 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:42:36]  *** Error codes and diagnostics ***
[2025-10-12 20:42:36]     "exeErrorCode": 0,
[2025-10-12 20:42:36]     "exeErrorDiag": "",
[2025-10-12 20:42:36]     "pilotErrorCode": 0,
[2025-10-12 20:42:36]     "pilotErrorDiag": "",
[2025-10-12 20:42:36]  *** Listing of results directory ***
[2025-10-12 20:42:36] total 416348
[2025-10-12 20:42:36] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 15:28 pilot3.tar.gz
[2025-10-12 20:42:36] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 15:36 queuedata.json
[2025-10-12 20:42:36] -rwx------ 1 boincer umatlas     36292 Oct 12 15:36 runpilot2-wrapper.sh
[2025-10-12 20:42:36] -rw-r--r-- 1 boincer umatlas       100 Oct 12 19:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:42:36] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 19:28 run_atlas
[2025-10-12 20:42:36] -rw-r--r-- 1 boincer umatlas       105 Oct 12 19:28 job.xml
[2025-10-12 20:42:36] -rw-r--r-- 2 boincer umatlas 224040375 Oct 12 19:28 EVNT.46676267._004460.pool.root.1
[2025-10-12 20:42:36] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 19:28 start_atlas.sh
[2025-10-12 20:42:36] drwxrwx--x 2 boincer umatlas      4096 Oct 12 19:28 shared
[2025-10-12 20:42:36] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 19:28 input.tar.gz
[2025-10-12 20:42:36] -rw-r--r-- 1 boincer umatlas         0 Oct 12 19:28 boinc_lockfile
[2025-10-12 20:42:36] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 19:28 pandaJob.out
[2025-10-12 20:42:36] -rw------- 1 boincer umatlas    975603 Oct 12 19:28 agis_schedconf.cvmfs.json
[2025-10-12 20:42:36] -rw------- 1 boincer umatlas   1560580 Oct 12 19:28 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:42:36] drwx------ 5 boincer umatlas      4096 Oct 12 19:28 pilot3
[2025-10-12 20:42:36] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 20:38 init_data.xml
[2025-10-12 20:42:36] -rw------- 1 boincer umatlas 196317221 Oct 12 20:41 HITS.46676269._087654.pool.root.1
[2025-10-12 20:42:36] -rw-r--r-- 1 boincer umatlas       529 Oct 12 20:41 boinc_task_state.xml
[2025-10-12 20:42:36] -rw------- 1 boincer umatlas      1048 Oct 12 20:41 memory_monitor_summary.json
[2025-10-12 20:42:36] -rw------- 1 boincer umatlas    398403 Oct 12 20:41 log.46676269._087654.job.log.tgz.1
[2025-10-12 20:42:36] -rw------- 1 boincer umatlas      7861 Oct 12 20:41 heartbeat.json
[2025-10-12 20:42:36] -rw------- 1 boincer umatlas        95 Oct 12 20:42 pilot_heartbeat.json
[2025-10-12 20:42:36] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 20:42 boinc_mmap_file
[2025-10-12 20:42:36] -rw-r--r-- 1 boincer umatlas        27 Oct 12 20:42 wrapper_checkpoint.txt
[2025-10-12 20:42:36] -rw------- 1 boincer umatlas      4746 Oct 12 20:42 pilotlog.txt
[2025-10-12 20:42:36] -rw------- 1 boincer umatlas    640401 Oct 12 20:42 log.46676269._087654.job.log.1
[2025-10-12 20:42:36] -rw------- 1 boincer umatlas       357 Oct 12 20:42 output.list
[2025-10-12 20:42:36] -rw-r--r-- 1 boincer umatlas       620 Oct 12 20:42 runtime_log
[2025-10-12 20:42:36] -rw------- 1 boincer umatlas   1054720 Oct 12 20:42 result.tar.gz
[2025-10-12 20:42:36] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 20:42 runtime_log.err
[2025-10-12 20:42:36] -rw------- 1 boincer umatlas       659 Oct 12 20:42 eBVMDmK3GS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmbqUMDmGpi17n.diag
[2025-10-12 20:42:36] -rw-r--r-- 1 boincer umatlas     21773 Oct 12 20:42 stderr.txt
[2025-10-12 20:42:36] HITS file was successfully produced:
[2025-10-12 20:42:36] -rw------- 1 boincer umatlas 196317221 Oct 12 20:41 shared/HITS.pool.root.1
[2025-10-12 20:42:36]  *** Contents of shared directory: ***
[2025-10-12 20:42:36] total 412124
[2025-10-12 20:42:36] -rw-r--r-- 2 boincer umatlas 224040375 Oct 12 19:28 ATLAS.root_0
[2025-10-12 20:42:36] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 19:28 start_atlas.sh
[2025-10-12 20:42:36] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 19:28 input.tar.gz
[2025-10-12 20:42:36] -rw------- 1 boincer umatlas 196317221 Oct 12 20:41 HITS.pool.root.1
[2025-10-12 20:42:36] -rw------- 1 boincer umatlas   1054720 Oct 12 20:42 result.tar.gz
20:42:37 (14458): run_atlas exited; CPU time 47305.061586
20:42:37 (14458): called boinc_finish(0)

</stderr_txt>
]]>

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