Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:30:15 (4644): wrapper (7.7.26015): starting
19:30:15 (4644): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 19:30:15] Arguments: --nthreads 12
[2025-10-12 19:30:15] Threads: 12
[2025-10-12 19:30:15] Checking for CVMFS
[2025-10-12 19:30:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:30:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:30:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:30:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:30:15] 2.11.2.0 2924 223497 103256 151641 3 56 15967738 20275201 1 130560 4 110694816 99.984 13818559 12972 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 19:30:15] CVMFS is ok
[2025-10-12 19:30:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:30:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:30:15] Further information can be found at the LHC@home message board.
[2025-10-12 19:30:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:30:15] Checking for apptainer binary...
[2025-10-12 19:30:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:30:15] Running /usr/bin/apptainer --version
[2025-10-12 19:30:15] apptainer version 1.3.2-1.el7
[2025-10-12 19:30:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:30:16] c-205-28.aglt2.org
[2025-10-12 19:30:16] apptainer works
[2025-10-12 19:30:16] Set ATHENA_PROC_NUMBER=12
[2025-10-12 19:30:16] Set ATHENA_CORE_NUMBER=12
[2025-10-12 19:30:17] Starting ATLAS job with PandaID=6840429247
[2025-10-12 19:30:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:40:59]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:40:59]  status_code=0
[2025-10-12 20:40:59]  storage_token=
[2025-10-12 20:40:59]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840429247/log.46676269._084593.job.log.tgz.1
[2025-10-12 20:40:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/04/40/log.46676269._084593.job.log.tgz.1
[2025-10-12 20:40:59]  workdir=None
[2025-10-12 20:40:59] ]
[2025-10-12 20:40:59] 2025-10-13 00:40:17,553 | INFO     | transferring file log.46676269._084593.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840429247/log.46676269._084593.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 20:40:59] 2025-10-13 00:40:17,553 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840429247/log.46676269._084593.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._084593.job
[2025-10-12 20:40:59] 2025-10-13 00:40:17,575 | INFO     | adding to output.list: log.46676269._084593.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/04/40/log.46676269._084593.job.log.tg
[2025-10-12 20:40:59] 2025-10-13 00:40:17,576 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 20:40:59] 2025-10-13 00:40:17,576 | INFO     | summary of transferred files:
[2025-10-12 20:40:59] 2025-10-13 00:40:17,577 | INFO     |  -- lfn=log.46676269._084593.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 20:40:59] 2025-10-13 00:40:17,577 | INFO     | stage-out finished correctly
[2025-10-12 20:40:59] 2025-10-13 00:40:17,737 | INFO     | time since job start (4185s) is within the limit (172800.0s)
[2025-10-12 20:40:59] 2025-10-13 00:40:17,906 | INFO     | monitor loop #313: job 0:6840429247 is in state 'finished'
[2025-10-12 20:40:59] 2025-10-13 00:40:17,906 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:40:59] 2025-10-13 00:40:19,485 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 20:40:59] 2025-10-13 00:40:19,742 | INFO     | time since job start (4187s) is within the limit (172800.0s)
[2025-10-12 20:40:59] 2025-10-13 00:40:20,409 | INFO     | monitor loop #314: job 0:6840429247 is in state 'finished'
[2025-10-12 20:40:59] 2025-10-13 00:40:20,410 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:40:59] 2025-10-13 00:40:21,748 | INFO     | time since job start (4189s) is within the limit (172800.0s)
[2025-10-12 20:40:59] 2025-10-13 00:40:22,113 | INFO     | job 6840429247 has state=finished
[2025-10-12 20:40:59] 2025-10-13 00:40:22,113 | INFO     | preparing for final server update for job 6840429247 in state='finished'
[2025-10-12 20:40:59] 2025-10-13 00:40:22,114 | INFO     | this job has now completed (state=finished)
[2025-10-12 20:40:59] 2025-10-13 00:40:22,114 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 20:40:59] 2025-10-13 00:40:22,114 | INFO     | log transfer has been attempted: DONE
[2025-10-12 20:40:59] 2025-10-13 00:40:22,115 | INFO     | job 6840429247 has finished - writing final server update
[2025-10-12 20:40:59] 2025-10-13 00:40:22,115 | INFO     | total number of processed events: 400 (read)
[2025-10-12 20:40:59] 2025-10-13 00:40:22,116 | INFO     | executing command: lscpu
[2025-10-12 20:40:59] 2025-10-13 00:40:22,145 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 20:40:59] 2025-10-13 00:40:22,918 | INFO     | monitor loop #315: job 0:6840429247 is in state 'finished'
[2025-10-12 20:40:59] 2025-10-13 00:40:22,918 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:40:59] 2025-10-13 00:40:23,754 | INFO     | time since job start (4191s) is within the limit (172800.0s)
[2025-10-12 20:40:59] 2025-10-13 00:40:24,871 | INFO     | PID=8323 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 20:40:59] 2025-10-13 00:40:25,421 | INFO     | monitor loop #316: job 0:6840429247 is in state 'finished'
[2025-10-12 20:40:59] 2025-10-13 00:40:25,421 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:40:59] 2025-10-13 00:40:25,871 | INFO     | time since job start (4193s) is within the limit (172800.0s)
[2025-10-12 20:40:59] 2025-10-13 00:40:26,777 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 20:40:59] 2025-10-13 00:40:26,781 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-12 20:40:59] 2025-10-13 00:40:26,783 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840429247/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 20:40:59] 2025-10-13 00:40:26,784 | INFO     | extracted standard info from prmon json
[2025-10-12 20:40:59] 2025-10-13 00:40:26,784 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 20:40:59] 2025-10-13 00:40:26,784 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 20:40:59] 2025-10-13 00:40:26,785 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 20:40:59] 2025-10-13 00:40:26,785 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 20:40:59] 2025-10-13 00:40:26,786 | INFO     | fitting pss+swap vs Time
[2025-10-12 20:40:59] 2025-10-13 00:40:26,786 | INFO     | sum of square deviations: 73882315.5
[2025-10-12 20:40:59] 2025-10-13 00:40:26,787 | INFO     | sum of deviations: -6003237469.0
[2025-10-12 20:40:59] 2025-10-13 00:40:26,787 | INFO     | mean x: 1760314025.5
[2025-10-12 20:40:59] 2025-10-13 00:40:26,787 | INFO     | mean y: 2843470.064516129
[2025-10-12 20:40:59] 2025-10-13 00:40:26,787 | INFO     | -- intersect: 143035489964.3101
[2025-10-12 20:40:59] 2025-10-13 00:40:26,787 | INFO     | intersect: 143035489964.3101
[2025-10-12 20:40:59] 2025-10-13 00:40:26,787 | INFO     | chi2: 0.09831016437095172
[2025-10-12 20:40:59] 2025-10-13 00:40:26,787 | INFO     | -- intersect: 143035489964.3101
[2025-10-12 20:40:59] 2025-10-13 00:40:26,788 | INFO     | current memory leak: -81.25 B/s (using 62 data points, chi2=0.10)
[2025-10-12 20:40:59] 2025-10-13 00:40:26,788 | INFO     | could have reported an average CPU frequency of 2056 MHz (6 samples)
[2025-10-12 20:40:59] 2025-10-13 00:40:26,788 | INFO     | ..............................
[2025-10-12 20:40:59] 2025-10-13 00:40:26,788 | INFO     | . Timing measurements:
[2025-10-12 20:40:59] 2025-10-13 00:40:26,788 | INFO     | . get job = 0 s
[2025-10-12 20:40:59] 2025-10-13 00:40:26,788 | INFO     | . initial setup = 2 s
[2025-10-12 20:40:59] 2025-10-13 00:40:26,788 | INFO     | . payload setup = 7 s
[2025-10-12 20:40:59] 2025-10-13 00:40:26,788 | INFO     | . stage-in = 0 s
[2025-10-12 20:40:59] 2025-10-13 00:40:26,789 | INFO     | . payload execution = 4158 s
[2025-10-12 20:40:59] 2025-10-13 00:40:26,789 | INFO     | . stage-out = 0 s
[2025-10-12 20:40:59] 2025-10-13 00:40:26,789 | INFO     | . log creation = 0 s
[2025-10-12 20:40:59] 2025-10-13 00:40:26,789 | INFO     | ..............................
[2025-10-12 20:40:59] 2025-10-13 00:40:26,871 | INFO     | 
[2025-10-12 20:40:59] 2025-10-13 00:40:26,871 | INFO     | job summary report
[2025-10-12 20:40:59] 2025-10-13 00:40:26,871 | INFO     | --------------------------------------------------
[2025-10-12 20:40:59] 2025-10-13 00:40:26,871 | INFO     | PanDA job id: 6840429247
[2025-10-12 20:40:59] 2025-10-13 00:40:26,872 | INFO     | task id: 46676269
[2025-10-12 20:40:59] 2025-10-13 00:40:26,872 | INFO     | errors: (none)
[2025-10-12 20:40:59] 2025-10-13 00:40:26,872 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 20:40:59] 2025-10-13 00:40:26,872 | INFO     | pilot state: finished 
[2025-10-12 20:40:59] 2025-10-13 00:40:26,872 | INFO     | transexitcode: 0
[2025-10-12 20:40:59] 2025-10-13 00:40:26,873 | INFO     | exeerrorcode: 0
[2025-10-12 20:40:59] 2025-10-13 00:40:26,873 | INFO     | exeerrordiag: 
[2025-10-12 20:40:59] 2025-10-13 00:40:26,873 | INFO     | exitcode: 0
[2025-10-12 20:40:59] 2025-10-13 00:40:26,873 | INFO     | exitmsg: OK
[2025-10-12 20:40:59] 2025-10-13 00:40:26,873 | INFO     | cpuconsumptiontime: 45001 s
[2025-10-12 20:40:59] 2025-10-13 00:40:26,873 | INFO     | nevents: 400
[2025-10-12 20:40:59] 2025-10-13 00:40:26,873 | INFO     | neventsw: 0
[2025-10-12 20:40:59] 2025-10-13 00:40:26,873 | INFO     | pid: 14676
[2025-10-12 20:40:59] 2025-10-13 00:40:26,873 | INFO     | pgrp: 14676
[2025-10-12 20:40:59] 2025-10-13 00:40:26,873 | INFO     | corecount: 12
[2025-10-12 20:40:59] 2025-10-13 00:40:26,874 | INFO     | event service: False
[2025-10-12 20:40:59] 2025-10-13 00:40:26,874 | INFO     | sizes: {0: 2348630, 1: 2348885, 6: 2349147, 12: 2349175, 4169: 2375100, 4170: 2384098, 4172: 2384282, 4179: 2384476}
[2025-10-12 20:40:59] 2025-10-13 00:40:26,874 | INFO     | --------------------------------------------------
[2025-10-12 20:40:59] 2025-10-13 00:40:26,874 | INFO     | 
[2025-10-12 20:40:59] 2025-10-13 00:40:26,874 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 20:40:59] 2025-10-13 00:40:26,897 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,898 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,898 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,898 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,898 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,898 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,899 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,899 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,899 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,899 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,899 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,900 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,900 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,900 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,900 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,900 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,900 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,901 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 20:40:59] 2025-10-13 00:40:26,901 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,901 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 20:40:59] 2025-10-13 00:40:26,901 | INFO     | job 6840429247 has completed (purged errors)
[2025-10-12 20:40:59] 2025-10-13 00:40:26,901 | INFO     | overall cleanup function is called
[2025-10-12 20:40:59] 2025-10-13 00:40:27,910 | INFO     | --- collectZombieJob: --- 10, [14676]
[2025-10-12 20:40:59] 2025-10-13 00:40:27,910 | INFO     | zombie collector waiting for pid 14676
[2025-10-12 20:40:59] 2025-10-13 00:40:27,910 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:40:59] 2025-10-13 00:40:27,910 | INFO     | collected zombie processes
[2025-10-12 20:40:59] 2025-10-13 00:40:27,910 | INFO     | will attempt to kill all subprocesses of pid=14676
[2025-10-12 20:40:59] 2025-10-13 00:40:28,000 | INFO     | process IDs to be killed: [14676] (in reverse order)
[2025-10-12 20:40:59] 2025-10-13 00:40:28,052 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:40:59] 2025-10-13 00:40:28,053 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:40:59] 2025-10-13 00:40:28,055 | INFO     | did not find any defunct processes belonging to 14676
[2025-10-12 20:40:59] 2025-10-13 00:40:28,058 | INFO     | did not find any defunct processes belonging to 14676
[2025-10-12 20:40:59] 2025-10-13 00:40:28,058 | INFO     | ready for new job
[2025-10-12 20:40:59] 2025-10-13 00:40:28,058 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:40:59] 2025-10-13 00:40:28,059 | INFO     | ***************************************
[2025-10-12 20:40:59] 2025-10-13 00:40:28,059 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:40:59] 2025-10-13 00:40:28,059 | INFO     | ***************************************
[2025-10-12 20:40:59] 2025-10-13 00:40:28,059 | INFO     | 
[2025-10-12 20:40:59] 2025-10-13 00:40:28,060 | INFO     | architecture information:
[2025-10-12 20:40:59] 2025-10-13 00:40:28,060 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:40:59] 2025-10-13 00:40:28,075 | INFO     | cat /etc/os-release:
[2025-10-12 20:40:59] NAME="CentOS Linux"
[2025-10-12 20:40:59] VERSION="7 (Core)"
[2025-10-12 20:40:59] ID="centos"
[2025-10-12 20:40:59] ID_LIKE="rhel fedora"
[2025-10-12 20:40:59] VERSION_ID="7"
[2025-10-12 20:40:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:40:59] ANSI_COLOR="0;31"
[2025-10-12 20:40:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:40:59] HOME_URL="https://www.centos.org/"
[2025-10-12 20:40:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:40:59] 
[2025-10-12 20:40:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:40:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:40:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:40:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:40:59] 
[2025-10-12 20:40:59] 2025-10-13 00:40:28,075 | INFO     | ***************************************
[2025-10-12 20:40:59] 2025-10-13 00:40:28,578 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 20:40:59] 2025-10-13 00:40:28,597 | INFO     | sufficient remaining disk space (29375856640 B)
[2025-10-12 20:40:59] 2025-10-13 00:40:28,598 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:40:59] 2025-10-13 00:40:28,598 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:40:59] 2025-10-13 00:40:28,598 | INFO     | update_server=False
[2025-10-12 20:40:59] 2025-10-13 00:40:28,598 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:40:59] 2025-10-13 00:40:28,599 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:40:59] 2025-10-13 00:40:28,599 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:40:59] 2025-10-13 00:40:28,795 | INFO     | all payload control threads have been joined
[2025-10-12 20:40:59] 2025-10-13 00:40:28,935 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:40:59] 2025-10-13 00:40:28,935 | INFO     | aborting loop
[2025-10-12 20:40:59] 2025-10-13 00:40:29,051 | INFO     | all data control threads have been joined
[2025-10-12 20:40:59] 2025-10-13 00:40:29,604 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:40:59] 2025-10-13 00:40:29,604 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:40:59] 2025-10-13 00:40:29,752 | INFO     | [job] validate thread has finished
[2025-10-12 20:40:59] 2025-10-13 00:40:29,754 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:40:59] 2025-10-13 00:40:29,800 | INFO     | [payload] control thread has finished
[2025-10-12 20:40:59] 2025-10-13 00:40:29,903 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:40:59] 2025-10-13 00:40:29,904 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:40:59] 2025-10-13 00:40:29,936 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:40:59] 2025-10-13 00:40:29,963 | INFO     | all job control threads have been joined
[2025-10-12 20:40:59] 2025-10-13 00:40:30,057 | INFO     | [data] control thread has finished
[2025-10-12 20:40:59] 2025-10-13 00:40:30,076 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:40:59] 2025-10-13 00:40:30,388 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:40:59] 2025-10-13 00:40:30,527 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:40:59] 2025-10-13 00:40:30,605 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:40:59] 2025-10-13 00:40:30,641 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:40:59] 2025-10-13 00:40:30,968 | INFO     | [job] control thread has finished
[2025-10-12 20:40:59] 2025-10-13 00:40:31,028 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:40:59] 2025-10-13 00:40:34,082 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:40:59] 2025-10-13 00:40:38,257 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:40:59] 2025-10-13 00:40:38,456 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140419419232064)>', '<ExcThread(monitor, started 140418847074048)>']
[2025-10-12 20:40:59] 2025-10-13 00:40:43,477 | INFO     | all workflow threads have been joined
[2025-10-12 20:40:59] 2025-10-13 00:40:43,477 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:40:59] 2025-10-13 00:40:43,477 | INFO     | traces error code: 0
[2025-10-12 20:40:59] 2025-10-13 00:40:43,477 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:40:59] 2025-10-13 00:40:59,063 | INFO     | PID=8323 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 20:40:59] 2025-10-13 00:40:59,064 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:40:59] 2025-10-13 00:40:59,064 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:40:59] 2025-10-13 00:40:59,064 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:40:59] 2025-10-13 00:40:59,064 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:40:59] 2025-10-13 00:40:59,064 | INFO     | [monitor] control thread has ended
[2025-10-12 20:40:59] 2025-10-13 00:40:59,156 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:40:59] 2025-10-13 00:40:59,160 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:40:59] 2025-10-13 00:40:59,163 [wrapper] pilotpid: 8323
[2025-10-12 20:40:59] 2025-10-13 00:40:59,167 [wrapper] Pilot exit status: 0
[2025-10-12 20:40:59] 2025-10-13 00:40:59,182 [wrapper] pandaids: 6840429247
[2025-10-12 20:40:59] 2025-10-13 00:40:59,220 [wrapper] cleanup supervisor_pilot 29978 8324
[2025-10-12 20:40:59] 2025-10-13 00:40:59,224 [wrapper] Test setup, not cleaning
[2025-10-12 20:40:59] 2025-10-13 00:40:59,228 [wrapper] apfmon messages muted
[2025-10-12 20:40:59] 2025-10-13 00:40:59,232 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:40:59] 2025-10-13 00:40:59,235 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:40:59]  *** Error codes and diagnostics ***
[2025-10-12 20:40:59]     "exeErrorCode": 0,
[2025-10-12 20:40:59]     "exeErrorDiag": "",
[2025-10-12 20:40:59]     "pilotErrorCode": 0,
[2025-10-12 20:40:59]     "pilotErrorDiag": "",
[2025-10-12 20:40:59]  *** Listing of results directory ***
[2025-10-12 20:40:59] total 403160
[2025-10-12 20:40:59] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 12:49 pilot3.tar.gz
[2025-10-12 20:40:59] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 13:15 queuedata.json
[2025-10-12 20:40:59] -rwx------ 1 boincer umatlas     36292 Oct 12 13:16 runpilot2-wrapper.sh
[2025-10-12 20:40:59] -rw-r--r-- 1 boincer umatlas       100 Oct 12 19:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:40:59] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 19:30 run_atlas
[2025-10-12 20:40:59] -rw-r--r-- 1 boincer umatlas       105 Oct 12 19:30 job.xml
[2025-10-12 20:40:59] -rw-r--r-- 2 boincer umatlas 218703695 Oct 12 19:30 EVNT.46676267._004808.pool.root.1
[2025-10-12 20:40:59] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 19:30 start_atlas.sh
[2025-10-12 20:40:59] drwxrwx--x 2 boincer umatlas      4096 Oct 12 19:30 shared
[2025-10-12 20:40:59] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 19:30 input.tar.gz
[2025-10-12 20:40:59] -rw-r--r-- 1 boincer umatlas         0 Oct 12 19:30 boinc_lockfile
[2025-10-12 20:40:59] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 19:30 pandaJob.out
[2025-10-12 20:40:59] -rw------- 1 boincer umatlas    975603 Oct 12 19:30 agis_schedconf.cvmfs.json
[2025-10-12 20:40:59] -rw------- 1 boincer umatlas   1560580 Oct 12 19:30 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:40:59] drwx------ 5 boincer umatlas      4096 Oct 12 19:30 pilot3
[2025-10-12 20:40:59] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 20:39 init_data.xml
[2025-10-12 20:40:59] -rw------- 1 boincer umatlas 188227024 Oct 12 20:39 HITS.46676269._084593.pool.root.1
[2025-10-12 20:40:59] -rw-r--r-- 1 boincer umatlas       529 Oct 12 20:40 boinc_task_state.xml
[2025-10-12 20:40:59] -rw------- 1 boincer umatlas      1050 Oct 12 20:40 memory_monitor_summary.json
[2025-10-12 20:40:59] -rw------- 1 boincer umatlas    389446 Oct 12 20:40 log.46676269._084593.job.log.tgz.1
[2025-10-12 20:40:59] -rw------- 1 boincer umatlas      7851 Oct 12 20:40 heartbeat.json
[2025-10-12 20:40:59] -rw------- 1 boincer umatlas        95 Oct 12 20:40 pilot_heartbeat.json
[2025-10-12 20:40:59] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 20:40 boinc_mmap_file
[2025-10-12 20:40:59] -rw-r--r-- 1 boincer umatlas        27 Oct 12 20:40 wrapper_checkpoint.txt
[2025-10-12 20:40:59] -rw------- 1 boincer umatlas       744 Oct 12 20:40 pilotlog.txt
[2025-10-12 20:40:59] -rw------- 1 boincer umatlas    613852 Oct 12 20:40 log.46676269._084593.job.log.1
[2025-10-12 20:40:59] -rw------- 1 boincer umatlas       357 Oct 12 20:40 output.list
[2025-10-12 20:40:59] -rw-r--r-- 1 boincer umatlas       620 Oct 12 20:40 runtime_log
[2025-10-12 20:40:59] -rw------- 1 boincer umatlas   1024000 Oct 12 20:40 result.tar.gz
[2025-10-12 20:40:59] -rw------- 1 boincer umatlas       659 Oct 12 20:40 StQLDmRrES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFqkNDms58dwm.diag
[2025-10-12 20:40:59] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 20:40 runtime_log.err
[2025-10-12 20:40:59] -rw-r--r-- 1 boincer umatlas     22214 Oct 12 20:40 stderr.txt
[2025-10-12 20:40:59] HITS file was successfully produced:
[2025-10-12 20:40:59] -rw------- 1 boincer umatlas 188227024 Oct 12 20:39 shared/HITS.pool.root.1
[2025-10-12 20:40:59]  *** Contents of shared directory: ***
[2025-10-12 20:40:59] total 398976
[2025-10-12 20:40:59] -rw-r--r-- 2 boincer umatlas 218703695 Oct 12 19:30 ATLAS.root_0
[2025-10-12 20:40:59] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 19:30 start_atlas.sh
[2025-10-12 20:40:59] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 19:30 input.tar.gz
[2025-10-12 20:40:59] -rw------- 1 boincer umatlas 188227024 Oct 12 20:39 HITS.pool.root.1
[2025-10-12 20:40:59] -rw------- 1 boincer umatlas   1024000 Oct 12 20:40 result.tar.gz
20:41:01 (4644): run_atlas exited; CPU time 44973.213640
20:41:01 (4644): called boinc_finish(0)

</stderr_txt>
]]>

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