Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:57:22 (3346748): wrapper (7.7.26015): starting
09:57:22 (3346748): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 09:57:22] Arguments: --nthreads 3
[2025-10-13 09:57:22] Threads: 3
[2025-10-13 09:57:22] Checking for CVMFS
[2025-10-13 09:57:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 09:57:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 09:57:22] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 09:57:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 09:57:22] 2.9.2.0 1676327 5454 86028 151653 0 57 29671457 36864000 0 130560 0 4397755 99.991 186720 697 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 09:57:22] CVMFS is ok
[2025-10-13 09:57:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 09:57:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 09:57:22] Further information can be found at the LHC@home message board.
[2025-10-13 09:57:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 09:57:22] Checking for apptainer binary...
[2025-10-13 09:57:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 09:57:22] Running /usr/bin/apptainer --version
[2025-10-13 09:57:22] apptainer version 1.4.1-1.1
[2025-10-13 09:57:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 09:57:22] atlasA303a
[2025-10-13 09:57:22] apptainer works
[2025-10-13 09:57:22] Set ATHENA_PROC_NUMBER=3
[2025-10-13 09:57:22] Set ATHENA_CORE_NUMBER=3
[2025-10-13 09:57:22] Starting ATLAS job with PandaID=6840713452
[2025-10-13 09:57:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 11:19:39]  *** The last 200 lines of the pilot log: ***
[2025-10-13 11:19:39] 2025-10-13 09:18:52,925 | INFO     | [data] copytool_in thread has finished
[2025-10-13 11:19:39] 2025-10-13 09:18:53,130 | INFO     | [job] validate thread has finished
[2025-10-13 11:19:39] 2025-10-13 09:18:53,182 | INFO     | [data] control thread has finished
[2025-10-13 11:19:39] 2025-10-13 09:18:53,271 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 11:19:39] 2025-10-13 09:18:53,326 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 11:19:39] 2025-10-13 09:18:53,351 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 11:19:39] 2025-10-13 09:18:53,354 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 11:19:39] 2025-10-13 09:18:53,529 | INFO     | [data] copytool_out thread has finished
[2025-10-13 11:19:39] 2025-10-13 09:18:53,880 | INFO     | [payload] failed_post thread has finished
[2025-10-13 11:19:39] 2025-10-13 09:18:57,358 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 11:19:39] 2025-10-13 09:19:02,168 | INFO     | job.realtimelogging is not enabled
[2025-10-13 11:19:39] 2025-10-13 09:19:03,174 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 11:19:39] 2025-10-13 09:19:22,404 | INFO     | PID=3350459 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 11:19:39] 2025-10-13 09:19:22,405 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 11:19:39] 2025-10-13 09:19:22,405 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 11:19:39] 2025-10-13 09:19:22,405 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 11:19:39] 2025-10-13 09:19:33,360 | INFO     | [monitor] cgroup control has ended
[2025-10-13 11:19:39] 2025-10-13 09:19:34,366 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139809909237568)>', '<ExcThread(monitor, started 139808835892992)>']
[2025-10-13 11:19:39] 2025-10-13 09:19:34,469 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 11:19:39] 2025-10-13 09:19:34,469 | INFO     | [monitor] control thread has ended
[2025-10-13 11:19:39] 2025-10-13 09:19:39,391 | INFO     | all workflow threads have been joined
[2025-10-13 11:19:39] 2025-10-13 09:19:39,392 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 11:19:39] 2025-10-13 09:19:39,392 | INFO     | traces error code: 0
[2025-10-13 11:19:39] 2025-10-13 09:19:39,392 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 11:19:39] 2025-10-13 09:19:39,443 [wrapper] ==== pilot stdout END ====
[2025-10-13 11:19:39] 2025-10-13 09:19:39,446 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 11:19:39] 2025-10-13 09:19:39,449 [wrapper] pilotpid: 3350459
[2025-10-13 11:19:39] 2025-10-13 09:19:39,451 [wrapper] Pilot exit status: 0
[2025-10-13 11:19:39] 2025-10-13 09:19:39,459 [wrapper] pandaids: 6840713452
[2025-10-13 11:19:39] 2025-10-13 09:19:39,477 [wrapper] cleanup supervisor_pilot 3368812 3350460
[2025-10-13 11:19:39] 2025-10-13 09:19:39,479 [wrapper] Test setup, not cleaning
[2025-10-13 11:19:39] 2025-10-13 09:19:39,482 [wrapper] apfmon messages muted
[2025-10-13 11:19:39] 2025-10-13 09:19:39,484 [wrapper] ==== wrapper stdout END ====
[2025-10-13 11:19:39] 2025-10-13 09:19:39,487 [wrapper] ==== wrapper stderr END ====
[2025-10-13 11:19:39]  *** Error codes and diagnostics ***
[2025-10-13 11:19:39]     "exeErrorCode": 0,
[2025-10-13 11:19:39]     "exeErrorDiag": "",
[2025-10-13 11:19:39]     "pilotErrorCode": 0,
[2025-10-13 11:19:39]     "pilotErrorDiag": "",
[2025-10-13 11:19:39]  *** Listing of results directory ***
[2025-10-13 11:19:39] total 417036
[2025-10-13 11:19:39] -rw-r--r-- 1 boinc boinc    557409 Oct 12 21:28 pilot3.tar.gz
[2025-10-13 11:19:39] -rw-r--r-- 1 boinc boinc      5112 Oct 12 21:45 queuedata.json
[2025-10-13 11:19:39] -rwx------ 1 boinc boinc     36292 Oct 12 21:45 runpilot2-wrapper.sh
[2025-10-13 11:19:39] -rw-r--r-- 1 boinc boinc       100 Oct 13 09:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 11:19:39] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 09:57 run_atlas
[2025-10-13 11:19:39] -rw-r--r-- 1 boinc boinc       105 Oct 13 09:57 job.xml
[2025-10-13 11:19:39] -rw-r--r-- 2 boinc boinc 224317575 Oct 13 09:57 EVNT.46676267._004465.pool.root.1
[2025-10-13 11:19:39] drwxrwx--x 2 boinc boinc      4096 Oct 13 09:57 shared
[2025-10-13 11:19:39] -rw-r--r-- 2 boinc boinc    569686 Oct 13 09:57 input.tar.gz
[2025-10-13 11:19:39] -rw-r--r-- 2 boinc boinc     15120 Oct 13 09:57 start_atlas.sh
[2025-10-13 11:19:39] -rw-r--r-- 1 boinc boinc         0 Oct 13 09:57 boinc_setup_complete
[2025-10-13 11:19:39] -rw-r--r-- 1 boinc boinc      6450 Oct 13 09:57 init_data.xml
[2025-10-13 11:19:39] -rw-r--r-- 1 boinc boinc         0 Oct 13 09:57 boinc_lockfile
[2025-10-13 11:19:39] -rw-r--r-- 1 boinc boinc      2550 Oct 13 09:57 pandaJob.out
[2025-10-13 11:19:39] -rw------- 1 boinc boinc    972849 Oct 13 09:57 agis_schedconf.cvmfs.json
[2025-10-13 11:19:39] -rw------- 1 boinc boinc   1560580 Oct 13 09:57 agis_ddmendpoints.agis.ALL.json
[2025-10-13 11:19:39] drwx------ 5 boinc boinc      4096 Oct 13 09:57 pilot3
[2025-10-13 11:19:39] -rw------- 1 boinc boinc 196886188 Oct 13 11:18 HITS.46676269._087774.pool.root.1
[2025-10-13 11:19:39] -rw-r--r-- 1 boinc boinc       529 Oct 13 11:18 boinc_task_state.xml
[2025-10-13 11:19:39] -rw------- 1 boinc boinc      1017 Oct 13 11:18 memory_monitor_summary.json
[2025-10-13 11:19:39] -rw------- 1 boinc boinc    259346 Oct 13 11:18 log.46676269._087774.job.log.tgz.1
[2025-10-13 11:19:39] -rw------- 1 boinc boinc      7761 Oct 13 11:18 heartbeat.json
[2025-10-13 11:19:39] -rw------- 1 boinc boinc        95 Oct 13 11:19 pilot_heartbeat.json
[2025-10-13 11:19:39] -rw-r--r-- 1 boinc boinc      8192 Oct 13 11:19 boinc_mmap_file
[2025-10-13 11:19:39] -rw-r--r-- 1 boinc boinc        27 Oct 13 11:19 wrapper_checkpoint.txt
[2025-10-13 11:19:39] -rw------- 1 boinc boinc      4824 Oct 13 11:19 pilotlog.txt
[2025-10-13 11:19:39] -rw------- 1 boinc boinc    717213 Oct 13 11:19 log.46676269._087774.job.log.1
[2025-10-13 11:19:39] -rw------- 1 boinc boinc       357 Oct 13 11:19 output.list
[2025-10-13 11:19:39] -rw-r--r-- 1 boinc boinc       620 Oct 13 11:19 runtime_log
[2025-10-13 11:19:39] -rw------- 1 boinc boinc    993280 Oct 13 11:19 result.tar.gz
[2025-10-13 11:19:39] -rw-r--r-- 1 boinc boinc      8797 Oct 13 11:19 runtime_log.err
[2025-10-13 11:19:39] -rw------- 1 boinc boinc       662 Oct 13 11:19 hzNNDmmBHS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmGrUMDmMRBCNm.diag
[2025-10-13 11:19:39] -rw-r--r-- 1 boinc boinc      5946 Oct 13 11:19 stderr.txt
[2025-10-13 11:19:39] HITS file was successfully produced:
[2025-10-13 11:19:39] -rw------- 1 boinc boinc 196886188 Oct 13 11:18 shared/HITS.pool.root.1
[2025-10-13 11:19:39]  *** Contents of shared directory: ***
[2025-10-13 11:19:39] total 412892
[2025-10-13 11:19:39] -rw-r--r-- 2 boinc boinc 224317575 Oct 13 09:57 ATLAS.root_0
[2025-10-13 11:19:39] -rw-r--r-- 2 boinc boinc    569686 Oct 13 09:57 input.tar.gz
[2025-10-13 11:19:39] -rw-r--r-- 2 boinc boinc     15120 Oct 13 09:57 start_atlas.sh
[2025-10-13 11:19:39] -rw------- 1 boinc boinc 196886188 Oct 13 11:18 HITS.pool.root.1
[2025-10-13 11:19:39] -rw------- 1 boinc boinc    993280 Oct 13 11:19 result.tar.gz
11:19:41 (3346748): run_atlas exited; CPU time 13993.706375
11:19:41 (3346748): called boinc_finish(0)

</stderr_txt>
]]>

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