Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:11:02 (3588763): wrapper (7.7.26015): starting
11:11:02 (3588763): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 11:11:02] Arguments: --nthreads 4
[2025-10-13 11:11:02] Threads: 4
[2025-10-13 11:11:02] Checking for CVMFS
[2025-10-13 11:11:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 11:11:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 11:11:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 11:11:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 11:11:02] 2.9.2.0 1748675 5390 98252 151654 0 57 29735934 36864001 0 130560 0 4792051 99.990 308620 742 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 11:11:02] CVMFS is ok
[2025-10-13 11:11:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 11:11:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 11:11:02] Further information can be found at the LHC@home message board.
[2025-10-13 11:11:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 11:11:02] Checking for apptainer binary...
[2025-10-13 11:11:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 11:11:02] Running /usr/bin/apptainer --version
[2025-10-13 11:11:02] apptainer version 1.4.1-1.1
[2025-10-13 11:11:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 11:11:03] thA375a
[2025-10-13 11:11:03] apptainer works
[2025-10-13 11:11:03] Set ATHENA_PROC_NUMBER=4
[2025-10-13 11:11:03] Set ATHENA_CORE_NUMBER=4
[2025-10-13 11:11:03] Starting ATLAS job with PandaID=6840538118
[2025-10-13 11:11:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 12:23:22]  *** The last 200 lines of the pilot log: ***
[2025-10-13 12:23:22] 2025-10-13 10:22:44,567 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 12:23:22] 2025-10-13 10:22:44,567 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 12:23:22] 2025-10-13 10:22:44,567 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 12:23:22] 2025-10-13 10:22:44,567 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 12:23:22] 2025-10-13 10:22:44,567 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 12:23:22] 2025-10-13 10:22:44,567 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 12:23:22] 2025-10-13 10:22:44,567 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 12:23:22] 2025-10-13 10:22:44,567 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 12:23:22] 2025-10-13 10:22:44,567 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 12:23:22] 2025-10-13 10:22:44,567 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 12:23:22] 2025-10-13 10:22:44,567 | INFO     | job 6840538118 has completed (purged errors)
[2025-10-13 12:23:22] 2025-10-13 10:22:44,567 | INFO     | overall cleanup function is called
[2025-10-13 12:23:22] 2025-10-13 10:22:45,574 | INFO     | --- collectZombieJob: --- 10, [3599133]
[2025-10-13 12:23:22] 2025-10-13 10:22:45,575 | INFO     | zombie collector waiting for pid 3599133
[2025-10-13 12:23:22] 2025-10-13 10:22:45,575 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 12:23:22] 2025-10-13 10:22:45,575 | INFO     | collected zombie processes
[2025-10-13 12:23:22] 2025-10-13 10:22:45,575 | INFO     | will attempt to kill all subprocesses of pid=3599133
[2025-10-13 12:23:22] 2025-10-13 10:22:45,619 | INFO     | process IDs to be killed: [3599133] (in reverse order)
[2025-10-13 12:23:22] 2025-10-13 10:22:45,653 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 12:23:22] 2025-10-13 10:22:45,653 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 12:23:22] 2025-10-13 10:22:45,655 | INFO     | did not find any defunct processes belonging to 3599133
[2025-10-13 12:23:22] 2025-10-13 10:22:45,657 | INFO     | did not find any defunct processes belonging to 3599133
[2025-10-13 12:23:22] 2025-10-13 10:22:45,657 | INFO     | ready for new job
[2025-10-13 12:23:22] 2025-10-13 10:22:45,657 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 12:23:22] 2025-10-13 10:22:45,658 | INFO     | ***************************************
[2025-10-13 12:23:22] 2025-10-13 10:22:45,658 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 12:23:22] 2025-10-13 10:22:45,658 | INFO     | ***************************************
[2025-10-13 12:23:22] 2025-10-13 10:22:45,658 | INFO     | 
[2025-10-13 12:23:22] 2025-10-13 10:22:45,658 | INFO     | architecture information:
[2025-10-13 12:23:22] 2025-10-13 10:22:45,658 | INFO     | executing command: cat /etc/os-release
[2025-10-13 12:23:22] 2025-10-13 10:22:45,672 | INFO     | cat /etc/os-release:
[2025-10-13 12:23:22] NAME="CentOS Linux"
[2025-10-13 12:23:22] VERSION="7 (Core)"
[2025-10-13 12:23:22] ID="centos"
[2025-10-13 12:23:22] ID_LIKE="rhel fedora"
[2025-10-13 12:23:22] VERSION_ID="7"
[2025-10-13 12:23:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 12:23:22] ANSI_COLOR="0;31"
[2025-10-13 12:23:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 12:23:22] HOME_URL="https://www.centos.org/"
[2025-10-13 12:23:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 12:23:22] 
[2025-10-13 12:23:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 12:23:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 12:23:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 12:23:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 12:23:22] 
[2025-10-13 12:23:22] 2025-10-13 10:22:45,672 | INFO     | ***************************************
[2025-10-13 12:23:22] 2025-10-13 10:22:46,175 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 12:23:22] 2025-10-13 10:22:46,193 | INFO     | sufficient remaining disk space (229746147328 B)
[2025-10-13 12:23:22] 2025-10-13 10:22:46,193 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 12:23:22] 2025-10-13 10:22:46,193 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 12:23:22] 2025-10-13 10:22:46,193 | INFO     | update_server=False
[2025-10-13 12:23:22] 2025-10-13 10:22:46,193 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 12:23:22] 2025-10-13 10:22:46,193 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 12:23:22] 2025-10-13 10:22:46,193 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 12:23:22] 2025-10-13 10:22:46,194 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:23:22] 2025-10-13 10:22:46,261 | INFO     | all payload control threads have been joined
[2025-10-13 12:23:22] 2025-10-13 10:22:46,353 | INFO     | all job control threads have been joined
[2025-10-13 12:23:22] 2025-10-13 10:22:46,513 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 12:23:22] 2025-10-13 10:22:46,513 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 12:23:22] 2025-10-13 10:22:46,513 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:23:22] 2025-10-13 10:22:46,513 | INFO     | will abort loop
[2025-10-13 12:23:22] 2025-10-13 10:22:46,816 | INFO     | all data control threads have been joined
[2025-10-13 12:23:22] 2025-10-13 10:22:47,199 | INFO     | [job] retrieve thread has finished
[2025-10-13 12:23:22] 2025-10-13 10:22:47,200 | INFO     | [job] queue monitor thread has finished
[2025-10-13 12:23:22] 2025-10-13 10:22:47,267 | INFO     | [payload] control thread has finished
[2025-10-13 12:23:22] 2025-10-13 10:22:47,359 | INFO     | [job] control thread has finished
[2025-10-13 12:23:22] 2025-10-13 10:22:47,519 | INFO     | [job] job monitor thread has finished
[2025-10-13 12:23:22] 2025-10-13 10:22:47,652 | INFO     | [data] copytool_in thread has finished
[2025-10-13 12:23:22] 2025-10-13 10:22:47,822 | INFO     | [data] control thread has finished
[2025-10-13 12:23:22] 2025-10-13 10:22:47,830 | INFO     | [payload] validate_post thread has finished
[2025-10-13 12:23:22] 2025-10-13 10:22:48,199 | INFO     | [data] copytool_out thread has finished
[2025-10-13 12:23:22] 2025-10-13 10:22:48,326 | INFO     | [payload] failed_post thread has finished
[2025-10-13 12:23:22] 2025-10-13 10:22:48,453 | INFO     | [job] validate thread has finished
[2025-10-13 12:23:22] 2025-10-13 10:22:48,576 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 12:23:22] 2025-10-13 10:22:48,691 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 12:23:22] 2025-10-13 10:22:48,700 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 12:23:22] 2025-10-13 10:22:50,200 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 12:23:22] 2025-10-13 10:22:57,215 | INFO     | job.realtimelogging is not enabled
[2025-10-13 12:23:22] 2025-10-13 10:22:58,220 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 12:23:22] 2025-10-13 10:23:15,891 | INFO     | PID=3592555 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 12:23:22] 2025-10-13 10:23:15,892 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 12:23:22] 2025-10-13 10:23:15,892 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 12:23:22] 2025-10-13 10:23:15,892 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 12:23:22] 2025-10-13 10:23:16,296 | INFO     | [monitor] cgroup control has ended
[2025-10-13 12:23:22] 2025-10-13 10:23:16,994 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140438178314048)>', '<ExcThread(monitor, started 140437662701312)>']
[2025-10-13 12:23:22] 2025-10-13 10:23:17,903 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 12:23:22] 2025-10-13 10:23:17,903 | INFO     | [monitor] control thread has ended
[2025-10-13 12:23:22] 2025-10-13 10:23:22,019 | INFO     | all workflow threads have been joined
[2025-10-13 12:23:22] 2025-10-13 10:23:22,019 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 12:23:22] 2025-10-13 10:23:22,020 | INFO     | traces error code: 0
[2025-10-13 12:23:22] 2025-10-13 10:23:22,020 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 12:23:22] 2025-10-13 10:23:22,102 [wrapper] ==== pilot stdout END ====
[2025-10-13 12:23:22] 2025-10-13 10:23:22,106 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 12:23:22] 2025-10-13 10:23:22,110 [wrapper] pilotpid: 3592555
[2025-10-13 12:23:22] 2025-10-13 10:23:22,114 [wrapper] Pilot exit status: 0
[2025-10-13 12:23:22] 2025-10-13 10:23:22,126 [wrapper] pandaids: 6840538118
[2025-10-13 12:23:22] 2025-10-13 10:23:22,149 [wrapper] cleanup supervisor_pilot 3609344 3592556
[2025-10-13 12:23:22] 2025-10-13 10:23:22,153 [wrapper] Test setup, not cleaning
[2025-10-13 12:23:22] 2025-10-13 10:23:22,157 [wrapper] apfmon messages muted
[2025-10-13 12:23:22] 2025-10-13 10:23:22,161 [wrapper] ==== wrapper stdout END ====
[2025-10-13 12:23:22] 2025-10-13 10:23:22,165 [wrapper] ==== wrapper stderr END ====
[2025-10-13 12:23:22]  *** Error codes and diagnostics ***
[2025-10-13 12:23:22]     "exeErrorCode": 0,
[2025-10-13 12:23:22]     "exeErrorDiag": "",
[2025-10-13 12:23:22]     "pilotErrorCode": 0,
[2025-10-13 12:23:22]     "pilotErrorDiag": "",
[2025-10-13 12:23:22]  *** Listing of results directory ***
[2025-10-13 12:23:22] total 410356
[2025-10-13 12:23:22] -rw-r--r-- 1 boinc boinc    557409 Oct 12 20:53 pilot3.tar.gz
[2025-10-13 12:23:22] -rw-r--r-- 1 boinc boinc      5112 Oct 12 21:03 queuedata.json
[2025-10-13 12:23:22] -rwx------ 1 boinc boinc     36292 Oct 12 21:04 runpilot2-wrapper.sh
[2025-10-13 12:23:22] -rw-r--r-- 1 boinc boinc       100 Oct 13 11:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 12:23:22] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 11:11 run_atlas
[2025-10-13 12:23:22] -rw-r--r-- 1 boinc boinc       105 Oct 13 11:11 job.xml
[2025-10-13 12:23:22] -rw-r--r-- 2 boinc boinc 221435060 Oct 13 11:11 EVNT.46676267._004439.pool.root.1
[2025-10-13 12:23:22] drwxrwx--x 2 boinc boinc      4096 Oct 13 11:11 shared
[2025-10-13 12:23:22] -rw-r--r-- 2 boinc boinc    569683 Oct 13 11:11 input.tar.gz
[2025-10-13 12:23:22] -rw-r--r-- 2 boinc boinc     15120 Oct 13 11:11 start_atlas.sh
[2025-10-13 12:23:22] -rw-r--r-- 1 boinc boinc         0 Oct 13 11:11 boinc_setup_complete
[2025-10-13 12:23:22] -rw-r--r-- 1 boinc boinc      6378 Oct 13 11:11 init_data.xml
[2025-10-13 12:23:22] -rw-r--r-- 1 boinc boinc         0 Oct 13 11:11 boinc_lockfile
[2025-10-13 12:23:22] -rw-r--r-- 1 boinc boinc      2549 Oct 13 11:11 pandaJob.out
[2025-10-13 12:23:22] -rw------- 1 boinc boinc    972857 Oct 13 11:11 agis_schedconf.cvmfs.json
[2025-10-13 12:23:22] -rw------- 1 boinc boinc   1560580 Oct 13 11:11 agis_ddmendpoints.agis.ALL.json
[2025-10-13 12:23:22] drwx------ 5 boinc boinc      4096 Oct 13 11:11 pilot3
[2025-10-13 12:23:22] -rw------- 1 boinc boinc 193092514 Oct 13 12:22 HITS.46676269._086990.pool.root.1
[2025-10-13 12:23:22] -rw-r--r-- 1 boinc boinc       530 Oct 13 12:22 boinc_task_state.xml
[2025-10-13 12:23:22] -rw------- 1 boinc boinc        95 Oct 13 12:22 pilot_heartbeat.json
[2025-10-13 12:23:22] -rw------- 1 boinc boinc      1019 Oct 13 12:22 memory_monitor_summary.json
[2025-10-13 12:23:22] -rw------- 1 boinc boinc    257999 Oct 13 12:22 log.46676269._086990.job.log.tgz.1
[2025-10-13 12:23:22] -rw------- 1 boinc boinc      7756 Oct 13 12:22 heartbeat.json
[2025-10-13 12:23:22] -rw-r--r-- 1 boinc boinc      8192 Oct 13 12:22 boinc_mmap_file
[2025-10-13 12:23:22] -rw-r--r-- 1 boinc boinc        27 Oct 13 12:22 wrapper_checkpoint.txt
[2025-10-13 12:23:22] -rw------- 1 boinc boinc      5010 Oct 13 12:23 pilotlog.txt
[2025-10-13 12:23:22] -rw------- 1 boinc boinc    637815 Oct 13 12:23 log.46676269._086990.job.log.1
[2025-10-13 12:23:22] -rw------- 1 boinc boinc       357 Oct 13 12:23 output.list
[2025-10-13 12:23:22] -rw-r--r-- 1 boinc boinc       620 Oct 13 12:23 runtime_log
[2025-10-13 12:23:22] -rw------- 1 boinc boinc    911360 Oct 13 12:23 result.tar.gz
[2025-10-13 12:23:22] -rw-r--r-- 1 boinc boinc      8782 Oct 13 12:23 runtime_log.err
[2025-10-13 12:23:22] -rw------- 1 boinc boinc       659 Oct 13 12:23 51WMDmuXGS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgDlNDmrZ08km.diag
[2025-10-13 12:23:22] -rw-r--r-- 1 boinc boinc     12153 Oct 13 12:23 stderr.txt
[2025-10-13 12:23:22] HITS file was successfully produced:
[2025-10-13 12:23:22] -rw------- 1 boinc boinc 193092514 Oct 13 12:22 shared/HITS.pool.root.1
[2025-10-13 12:23:22]  *** Contents of shared directory: ***
[2025-10-13 12:23:22] total 406292
[2025-10-13 12:23:22] -rw-r--r-- 2 boinc boinc 221435060 Oct 13 11:11 ATLAS.root_0
[2025-10-13 12:23:22] -rw-r--r-- 2 boinc boinc    569683 Oct 13 11:11 input.tar.gz
[2025-10-13 12:23:22] -rw-r--r-- 2 boinc boinc     15120 Oct 13 11:11 start_atlas.sh
[2025-10-13 12:23:22] -rw------- 1 boinc boinc 193092514 Oct 13 12:22 HITS.pool.root.1
[2025-10-13 12:23:22] -rw------- 1 boinc boinc    911360 Oct 13 12:23 result.tar.gz
12:23:23 (3588763): run_atlas exited; CPU time 15909.026239
12:23:23 (3588763): called boinc_finish(0)

</stderr_txt>
]]>

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