Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:13:58 (4124064): wrapper (7.7.26015): starting
20:13:58 (4124064): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 20:13:58] Arguments: --nthreads 9
[2025-10-12 20:13:58] Threads: 9
[2025-10-12 20:13:58] Checking for CVMFS
[2025-10-12 20:13:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:13:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:13:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:14:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:14:00] 2.13.2.0 2059728 129949 416236 151641 0 490 24556401 32935937 42550 16776704 0 304859916 99.636 288004148 20245 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 20:14:00] CVMFS is ok
[2025-10-12 20:14:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:14:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:14:00] Further information can be found at the LHC@home message board.
[2025-10-12 20:14:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:14:00] Checking for apptainer binary...
[2025-10-12 20:14:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:14:00] Running /usr/bin/apptainer --version
[2025-10-12 20:14:00] apptainer version 1.4.3-1.el9
[2025-10-12 20:14:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:14:01] c6-12-29-1.aglt2.org
[2025-10-12 20:14:01] apptainer works
[2025-10-12 20:14:01] Set ATHENA_PROC_NUMBER=9
[2025-10-12 20:14:01] Set ATHENA_CORE_NUMBER=9
[2025-10-12 20:14:01] Starting ATLAS job with PandaID=6840711743
[2025-10-12 20:14:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:55:29]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:55:29] 2025-10-13 03:54:41,090 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 23:55:29] 2025-10-13 03:54:41,112 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2605.7364999999995
[2025-10-12 23:55:29] 2025-10-13 03:54:41,230 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6840711743/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:55:29] 2025-10-13 03:54:41,245 | INFO     | extracted standard info from prmon json
[2025-10-12 23:55:29] 2025-10-13 03:54:41,246 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:55:29] 2025-10-13 03:54:41,246 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:55:29] 2025-10-13 03:54:41,246 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:55:29] 2025-10-13 03:54:41,246 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:55:29] 2025-10-13 03:54:41,251 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:55:29] 2025-10-13 03:54:41,251 | INFO     | sum of square deviations: 3038927011.308417
[2025-10-12 23:55:29] 2025-10-13 03:54:41,269 | INFO     | sum of deviations: 5706917379.224291
[2025-10-12 23:55:29] 2025-10-13 03:54:41,270 | INFO     | mean x: 1760321110.8878505
[2025-10-12 23:55:29] 2025-10-13 03:54:41,270 | INFO     | mean y: 2137086.0093457946
[2025-10-12 23:55:29] 2025-10-13 03:54:41,270 | INFO     | -- intersect: -3303637321.654349
[2025-10-12 23:55:29] 2025-10-13 03:54:41,270 | INFO     | intersect: -3303637321.654349
[2025-10-12 23:55:29] 2025-10-13 03:54:41,271 | INFO     | chi2: 3.260967329649329
[2025-10-12 23:55:29] 2025-10-13 03:54:41,271 | INFO     | sum of square deviations: 2830870131.8277564
[2025-10-12 23:55:29] 2025-10-13 03:54:41,289 | INFO     | sum of deviations: 19980043030.062206
[2025-10-12 23:55:29] 2025-10-13 03:54:41,289 | INFO     | mean x: 1760320958.3923445
[2025-10-12 23:55:29] 2025-10-13 03:54:41,289 | INFO     | mean y: 2147401.913875598
[2025-10-12 23:55:29] 2025-10-13 03:54:41,290 | INFO     | -- intersect: -12422049702.7025
[2025-10-12 23:55:29] 2025-10-13 03:54:41,290 | INFO     | intersect: -12422049702.7025
[2025-10-12 23:55:29] 2025-10-13 03:54:41,290 | INFO     | chi2: 2.575845639106308
[2025-10-12 23:55:29] 2025-10-13 03:54:41,290 | INFO     | current chi2=2.575845639106308 (change=21.009768614170575 %)
[2025-10-12 23:55:29] 2025-10-13 03:54:41,290 | INFO     | right removable region: 208
[2025-10-12 23:55:29] 2025-10-13 03:54:41,291 | INFO     | sum of square deviations: 2830832678.0382824
[2025-10-12 23:55:29] 2025-10-13 03:54:41,307 | INFO     | sum of deviations: -34998314068.746414
[2025-10-12 23:55:29] 2025-10-13 03:54:41,308 | INFO     | mean x: 1760321263.3971293
[2025-10-12 23:55:29] 2025-10-13 03:54:41,308 | INFO     | mean y: 2166763.7559808614
[2025-10-12 23:55:29] 2025-10-13 03:54:41,308 | INFO     | -- intersect: 21765472280.265236
[2025-10-12 23:55:29] 2025-10-13 03:54:41,308 | INFO     | intersect: 21765472280.265236
[2025-10-12 23:55:29] 2025-10-13 03:54:41,308 | INFO     | chi2: 1.1194347710904053
[2025-10-12 23:55:29] 2025-10-13 03:54:41,309 | INFO     | current chi2=1.1194347710904053 (change=65.6716962199439 %)
[2025-10-12 23:55:29] 2025-10-13 03:54:41,309 | INFO     | sum of square deviations: 2632459457.2304025
[2025-10-12 23:55:29] 2025-10-13 03:54:41,311 | INFO     | sum of deviations: -46096933687.00003
[2025-10-12 23:55:29] 2025-10-13 03:54:41,311 | INFO     | mean x: 1760321415.9068627
[2025-10-12 23:55:29] 2025-10-13 03:54:41,311 | INFO     | mean y: 2175203.0
[2025-10-12 23:55:29] 2025-10-13 03:54:41,311 | INFO     | -- intersect: 30827120808.14043
[2025-10-12 23:55:29] 2025-10-13 03:54:41,311 | INFO     | intersect: 30827120808.14043
[2025-10-12 23:55:29] 2025-10-13 03:54:41,328 | INFO     | chi2: 0.8510573017690026
[2025-10-12 23:55:29] 2025-10-13 03:54:41,328 | INFO     | current chi2=0.8510573017690026 (change=23.974373161554098 %)
[2025-10-12 23:55:29] 2025-10-13 03:54:41,328 | INFO     | left removable region: 20
[2025-10-12 23:55:29] 2025-10-13 03:54:41,329 | INFO     | sum of square deviations: 2060355154.957453
[2025-10-12 23:55:29] 2025-10-13 03:54:41,330 | INFO     | sum of deviations: -22373417632.308514
[2025-10-12 23:55:29] 2025-10-13 03:54:41,346 | INFO     | mean x: 1760321537.9255319
[2025-10-12 23:55:29] 2025-10-13 03:54:41,346 | INFO     | mean y: 2180193.335106383
[2025-10-12 23:55:29] 2025-10-13 03:54:41,347 | INFO     | -- intersect: 19117529719.55251
[2025-10-12 23:55:29] 2025-10-13 03:54:41,347 | INFO     | intersect: 19117529719.55251
[2025-10-12 23:55:29] 2025-10-13 03:54:41,347 | INFO     | chi2: 0.12479815725889995
[2025-10-12 23:55:29] 2025-10-13 03:54:41,347 | INFO     | -- intersect: 19117529719.55251
[2025-10-12 23:55:29] 2025-10-13 03:54:41,347 | INFO     | current memory leak: -10.86 B/s (using 188 data points, chi2=0.12)
[2025-10-12 23:55:29] 2025-10-13 03:54:41,348 | INFO     | could have reported an average CPU frequency of 2624 MHz (11 samples)
[2025-10-12 23:55:29] 2025-10-13 03:54:41,348 | INFO     | ..............................
[2025-10-12 23:55:29] 2025-10-13 03:54:41,349 | INFO     | . Timing measurements:
[2025-10-12 23:55:29] 2025-10-13 03:54:41,349 | INFO     | . get job = 0 s
[2025-10-12 23:55:29] 2025-10-13 03:54:41,349 | INFO     | . initial setup = 4 s
[2025-10-12 23:55:29] 2025-10-13 03:54:41,349 | INFO     | . payload setup = 34 s
[2025-10-12 23:55:29] 2025-10-13 03:54:41,349 | INFO     | . stage-in = 0 s
[2025-10-12 23:55:29] 2025-10-13 03:54:41,349 | INFO     | . payload execution = 13038 s
[2025-10-12 23:55:29] 2025-10-13 03:54:41,349 | INFO     | . stage-out = 5 s
[2025-10-12 23:55:29] 2025-10-13 03:54:41,361 | INFO     | . log creation = 0 s
[2025-10-12 23:55:29] 2025-10-13 03:54:41,362 | INFO     | ..............................
[2025-10-12 23:55:29] 2025-10-13 03:54:42,200 | INFO     | 
[2025-10-12 23:55:29] 2025-10-13 03:54:42,200 | INFO     | job summary report
[2025-10-12 23:55:29] 2025-10-13 03:54:42,201 | INFO     | --------------------------------------------------
[2025-10-12 23:55:29] 2025-10-13 03:54:42,201 | INFO     | PanDA job id: 6840711743
[2025-10-12 23:55:29] 2025-10-13 03:54:42,201 | INFO     | task id: 46676269
[2025-10-12 23:55:29] 2025-10-13 03:54:42,201 | INFO     | errors: (none)
[2025-10-12 23:55:29] 2025-10-13 03:54:42,201 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:55:29] 2025-10-13 03:54:42,201 | INFO     | pilot state: finished 
[2025-10-12 23:55:29] 2025-10-13 03:54:42,201 | INFO     | transexitcode: 0
[2025-10-12 23:55:29] 2025-10-13 03:54:42,201 | INFO     | exeerrorcode: 0
[2025-10-12 23:55:29] 2025-10-13 03:54:42,201 | INFO     | exeerrordiag: 
[2025-10-12 23:55:29] 2025-10-13 03:54:42,201 | INFO     | exitcode: 0
[2025-10-12 23:55:29] 2025-10-13 03:54:42,201 | INFO     | exitmsg: OK
[2025-10-12 23:55:29] 2025-10-13 03:54:42,201 | INFO     | cpuconsumptiontime: 43426 s
[2025-10-12 23:55:29] 2025-10-13 03:54:42,201 | INFO     | nevents: 400
[2025-10-12 23:55:29] 2025-10-13 03:54:42,202 | INFO     | neventsw: 0
[2025-10-12 23:55:29] 2025-10-13 03:54:42,202 | INFO     | pid: 4155165
[2025-10-12 23:55:29] 2025-10-13 03:54:42,202 | INFO     | pgrp: 4155165
[2025-10-12 23:55:29] 2025-10-13 03:54:42,202 | INFO     | corecount: 9
[2025-10-12 23:55:29] 2025-10-13 03:54:42,202 | INFO     | event service: False
[2025-10-12 23:55:29] 2025-10-13 03:54:42,202 | INFO     | sizes: {0: 2348029, 1: 2348714, 2: 2348913, 13: 2348913, 24: 2348969, 28: 2349259, 35: 2349415, 13078: 2379258, 13079: 2379257, 13087: 2388311, 13089: 2388367, 131
[2025-10-12 23:55:29] 2025-10-13 03:54:42,202 | INFO     | --------------------------------------------------
[2025-10-12 23:55:29] 2025-10-13 03:54:42,202 | INFO     | 
[2025-10-12 23:55:29] 2025-10-13 03:54:42,202 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 23:55:29] 2025-10-13 03:54:42,232 | INFO     | time since job start (13188s) is within the limit (172800.0s)
[2025-10-12 23:55:29] 2025-10-13 03:54:42,394 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,394 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,394 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,394 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,394 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,394 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,395 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,395 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,395 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,395 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,395 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,395 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,395 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,395 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,395 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,395 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,396 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,396 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:55:29] 2025-10-13 03:54:42,396 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,396 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:55:29] 2025-10-13 03:54:42,396 | INFO     | job 6840711743 has completed (purged errors)
[2025-10-12 23:55:29] 2025-10-13 03:54:42,396 | INFO     | overall cleanup function is called
[2025-10-12 23:55:29] 2025-10-13 03:54:43,454 | INFO     | --- collectZombieJob: --- 10, [4155165]
[2025-10-12 23:55:29] 2025-10-13 03:54:43,455 | INFO     | zombie collector waiting for pid 4155165
[2025-10-12 23:55:29] 2025-10-13 03:54:43,455 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:55:29] 2025-10-13 03:54:43,455 | INFO     | collected zombie processes
[2025-10-12 23:55:29] 2025-10-13 03:54:43,455 | INFO     | will attempt to kill all subprocesses of pid=4155165
[2025-10-12 23:55:29] 2025-10-13 03:54:48,347 | INFO     | PID=4132157 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:55:29] 2025-10-13 03:54:48,347 | INFO     | .. there are 58 such processes running
[2025-10-12 23:55:29] 2025-10-13 03:54:48,366 | INFO     | process IDs to be killed: [4155165] (in reverse order)
[2025-10-12 23:55:29] 2025-10-13 03:54:49,754 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:55:29] 2025-10-13 03:54:49,755 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:55:29] 2025-10-13 03:54:49,792 | INFO     | did not find any defunct processes belonging to 4155165
[2025-10-12 23:55:29] 2025-10-13 03:54:49,863 | INFO     | did not find any defunct processes belonging to 4155165
[2025-10-12 23:55:29] 2025-10-13 03:54:49,864 | INFO     | ready for new job
[2025-10-12 23:55:29] 2025-10-13 03:54:49,864 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:55:29] 2025-10-13 03:54:49,876 | INFO     | ***************************************
[2025-10-12 23:55:29] 2025-10-13 03:54:49,877 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:55:29] 2025-10-13 03:54:49,877 | INFO     | ***************************************
[2025-10-12 23:55:29] 2025-10-13 03:54:49,877 | INFO     | 
[2025-10-12 23:55:29] 2025-10-13 03:54:49,889 | INFO     | architecture information:
[2025-10-12 23:55:29] 2025-10-13 03:54:49,909 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:55:29] 2025-10-13 03:54:50,047 | INFO     | cat /etc/os-release:
[2025-10-12 23:55:29] NAME="CentOS Linux"
[2025-10-12 23:55:29] VERSION="7 (Core)"
[2025-10-12 23:55:29] ID="centos"
[2025-10-12 23:55:29] ID_LIKE="rhel fedora"
[2025-10-12 23:55:29] VERSION_ID="7"
[2025-10-12 23:55:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:55:29] ANSI_COLOR="0;31"
[2025-10-12 23:55:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:55:29] HOME_URL="https://www.centos.org/"
[2025-10-12 23:55:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:55:29] 
[2025-10-12 23:55:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:55:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:55:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:55:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:55:29] 
[2025-10-12 23:55:29] 2025-10-13 03:54:50,047 | INFO     | ***************************************
[2025-10-12 23:55:29] 2025-10-13 03:54:50,550 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 23:55:29] 2025-10-13 03:54:50,680 | INFO     | sufficient remaining disk space (94142201856 B)
[2025-10-12 23:55:29] 2025-10-13 03:54:50,685 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:55:29] 2025-10-13 03:54:50,685 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:55:29] 2025-10-13 03:54:50,685 | INFO     | update_server=False
[2025-10-12 23:55:29] 2025-10-13 03:54:50,685 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:55:29] 2025-10-13 03:54:50,686 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:55:29] 2025-10-13 03:54:50,699 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:55:29] 2025-10-13 03:54:50,876 | INFO     | all data control threads have been joined
[2025-10-12 23:55:29] 2025-10-13 03:54:51,246 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:55:29] 2025-10-13 03:54:51,315 | INFO     | all job control threads have been joined
[2025-10-12 23:55:29] 2025-10-13 03:54:51,351 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:55:29] 2025-10-13 03:54:51,352 | INFO     | aborting loop
[2025-10-12 23:55:29] 2025-10-13 03:54:51,691 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:55:29] 2025-10-13 03:54:51,862 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:55:29] 2025-10-13 03:54:51,886 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:55:29] 2025-10-13 03:54:51,907 | INFO     | [data] control thread has finished
[2025-10-12 23:55:29] 2025-10-13 03:54:51,958 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:55:29] 2025-10-13 03:54:52,025 | INFO     | all payload control threads have been joined
[2025-10-12 23:55:29] 2025-10-13 03:54:52,253 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:55:29] 2025-10-13 03:54:52,321 | INFO     | [job] control thread has finished
[2025-10-12 23:55:29] 2025-10-13 03:54:52,356 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:55:29] 2025-10-13 03:54:52,420 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:55:29] 2025-10-13 03:54:52,421 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:55:29] 2025-10-13 03:54:52,693 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:55:29] 2025-10-13 03:54:52,788 | INFO     | [job] validate thread has finished
[2025-10-12 23:55:29] 2025-10-13 03:54:52,851 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:55:29] 2025-10-13 03:54:52,968 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:55:29] 2025-10-13 03:54:53,031 | INFO     | [payload] control thread has finished
[2025-10-12 23:55:29] 2025-10-13 03:54:54,720 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:55:29] 2025-10-13 03:55:17,776 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:55:29] 2025-10-13 03:55:19,625 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140701966763840)>', '<ExcThread(monitor, started 140701090170624)>']
[2025-10-12 23:55:29] 2025-10-13 03:55:22,229 | INFO     | PID=4132157 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:55:29] 2025-10-13 03:55:22,229 | INFO     | .. there are 58 such processes running
[2025-10-12 23:55:29] 2025-10-13 03:55:22,230 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:55:29] 2025-10-13 03:55:22,230 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:55:29] 2025-10-13 03:55:22,230 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:55:29] 2025-10-13 03:55:22,230 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:55:29] 2025-10-13 03:55:22,231 | INFO     | [monitor] control thread has ended
[2025-10-12 23:55:29] 2025-10-13 03:55:24,678 | INFO     | all workflow threads have been joined
[2025-10-12 23:55:29] 2025-10-13 03:55:24,679 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:55:29] 2025-10-13 03:55:24,679 | INFO     | traces error code: 0
[2025-10-12 23:55:29] 2025-10-13 03:55:24,679 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:55:29] 2025-10-13 03:55:26,963 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:55:29] 2025-10-13 03:55:27,015 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:55:29] 2025-10-13 03:55:27,030 [wrapper] pilotpid: 4132157
[2025-10-12 23:55:29] 2025-10-13 03:55:27,051 [wrapper] Pilot exit status: 0
[2025-10-12 23:55:29] 2025-10-13 03:55:27,255 [wrapper] pandaids: 6840711743
[2025-10-12 23:55:29] 2025-10-13 03:55:28,085 [wrapper] cleanup supervisor_pilot  720845 4132158
[2025-10-12 23:55:29] 2025-10-13 03:55:28,164 [wrapper] Test setup, not cleaning
[2025-10-12 23:55:29] 2025-10-13 03:55:28,209 [wrapper] apfmon messages muted
[2025-10-12 23:55:29] 2025-10-13 03:55:28,254 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:55:29] 2025-10-13 03:55:28,321 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:55:29]  *** Error codes and diagnostics ***
[2025-10-12 23:55:29]     "exeErrorCode": 0,
[2025-10-12 23:55:29]     "exeErrorDiag": "",
[2025-10-12 23:55:29]     "pilotErrorCode": 0,
[2025-10-12 23:55:29]     "pilotErrorDiag": "",
[2025-10-12 23:55:29]  *** Listing of results directory ***
[2025-10-12 23:55:29] total 411536
[2025-10-12 23:55:29] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 14:53 pilot3.tar.gz
[2025-10-12 23:55:29] -rwx------. 1 boincer umatlas     36292 Oct 12 15:23 runpilot2-wrapper.sh
[2025-10-12 23:55:29] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 15:23 queuedata.json
[2025-10-12 23:55:29] -rw-r--r--. 1 boincer umatlas       100 Oct 12 20:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:55:29] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 20:13 run_atlas
[2025-10-12 23:55:29] -rw-r--r--. 1 boincer umatlas       105 Oct 12 20:13 job.xml
[2025-10-12 23:55:29] -rw-r--r--. 2 boincer umatlas 219355432 Oct 12 20:13 EVNT.46676267._004447.pool.root.1
[2025-10-12 23:55:29] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 20:13 start_atlas.sh
[2025-10-12 23:55:29] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 20:13 shared
[2025-10-12 23:55:29] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 20:13 input.tar.gz
[2025-10-12 23:55:29] -rw-r--r--. 1 boincer umatlas         0 Oct 12 20:13 boinc_lockfile
[2025-10-12 23:55:29] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 20:14 pandaJob.out
[2025-10-12 23:55:29] -rw-------. 1 boincer umatlas    975603 Oct 12 20:14 agis_schedconf.cvmfs.json
[2025-10-12 23:55:29] drwx------. 5 boincer umatlas      4096 Oct 12 20:14 pilot3
[2025-10-12 23:55:29] -rw-r--r--. 1 boincer umatlas      6861 Oct 12 23:47 init_data.xml
[2025-10-12 23:55:29] -rw-------. 1 boincer umatlas 194100499 Oct 12 23:52 HITS.46676269._087311.pool.root.1
[2025-10-12 23:55:29] -rw-r--r--. 1 boincer umatlas       530 Oct 12 23:52 boinc_task_state.xml
[2025-10-12 23:55:29] -rw-------. 1 boincer umatlas      1047 Oct 12 23:53 memory_monitor_summary.json
[2025-10-12 23:55:29] -rw-------. 1 boincer umatlas   1560580 Oct 12 23:53 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:55:29] -rw-------. 1 boincer umatlas    442041 Oct 12 23:53 log.46676269._087311.job.log.tgz.1
[2025-10-12 23:55:29] -rw-------. 1 boincer umatlas      7842 Oct 12 23:54 heartbeat.json
[2025-10-12 23:55:29] -rw-------. 1 boincer umatlas        95 Oct 12 23:55 pilot_heartbeat.json
[2025-10-12 23:55:29] -rw-------. 1 boincer umatlas      4824 Oct 12 23:55 pilotlog.txt
[2025-10-12 23:55:29] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 23:55 boinc_mmap_file
[2025-10-12 23:55:29] -rw-r--r--. 1 boincer umatlas        28 Oct 12 23:55 wrapper_checkpoint.txt
[2025-10-12 23:55:29] -rw-------. 1 boincer umatlas   1584695 Oct 12 23:55 log.46676269._087311.job.log.1
[2025-10-12 23:55:29] -rw-------. 1 boincer umatlas       357 Oct 12 23:55 output.list
[2025-10-12 23:55:29] -rw-r--r--. 1 boincer umatlas       620 Oct 12 23:55 runtime_log
[2025-10-12 23:55:29] -rw-------. 1 boincer umatlas   2048000 Oct 12 23:55 result.tar.gz
[2025-10-12 23:55:29] -rw-------. 1 boincer umatlas       657 Oct 12 23:55 x5MLDmGqGS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmjnUMDmQsz7sm.diag
[2025-10-12 23:55:29] -rw-r--r--. 1 boincer umatlas      8714 Oct 12 23:55 runtime_log.err
[2025-10-12 23:55:29] -rw-r--r--. 1 boincer umatlas     21312 Oct 12 23:55 stderr.txt
[2025-10-12 23:55:29] HITS file was successfully produced:
[2025-10-12 23:55:29] -rw-------. 1 boincer umatlas 194100499 Oct 12 23:52 shared/HITS.pool.root.1
[2025-10-12 23:55:29]  *** Contents of shared directory: ***
[2025-10-12 23:55:29] total 406352
[2025-10-12 23:55:29] -rw-r--r--. 2 boincer umatlas 219355432 Oct 12 20:13 ATLAS.root_0
[2025-10-12 23:55:29] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 20:13 start_atlas.sh
[2025-10-12 23:55:29] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 20:13 input.tar.gz
[2025-10-12 23:55:29] -rw-------. 1 boincer umatlas 194100499 Oct 12 23:52 HITS.pool.root.1
[2025-10-12 23:55:29] -rw-------. 1 boincer umatlas   2048000 Oct 12 23:55 result.tar.gz
23:55:31 (4124064): run_atlas exited; CPU time 44052.856265
23:55:31 (4124064): called boinc_finish(0)

</stderr_txt>
]]>

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