Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:38:45 (2800966): wrapper (7.7.26015): starting
10:38:45 (2800966): wrapper: running run_atlas (--nthreads 2)
[2025-10-13 10:38:45] Arguments: --nthreads 2
[2025-10-13 10:38:45] Threads: 2
[2025-10-13 10:38:45] Checking for CVMFS
[2025-10-13 10:38:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 10:38:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 10:38:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 10:38:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 10:38:46] 2.9.2.0 1499568 5540 59988 151654 3 57 30391609 36864001 0 130560 0 3343828 99.989 188714 869 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 10:38:46] CVMFS is ok
[2025-10-13 10:38:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 10:38:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 10:38:46] Further information can be found at the LHC@home message board.
[2025-10-13 10:38:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 10:38:46] Checking for apptainer binary...
[2025-10-13 10:38:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 10:38:46] Running /usr/bin/apptainer --version
[2025-10-13 10:38:46] apptainer version 1.4.1-1.1
[2025-10-13 10:38:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 10:38:46] thA389
[2025-10-13 10:38:46] apptainer works
[2025-10-13 10:38:46] Set ATHENA_PROC_NUMBER=2
[2025-10-13 10:38:46] Set ATHENA_CORE_NUMBER=2
[2025-10-13 10:38:46] Starting ATLAS job with PandaID=6840429336
[2025-10-13 10:38:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 12:45:21]  *** The last 200 lines of the pilot log: ***
[2025-10-13 12:45:21] 2025-10-13 10:44:49,379 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 12:45:21] 2025-10-13 10:44:49,379 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 12:45:21] 2025-10-13 10:44:49,379 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 12:45:21] 2025-10-13 10:44:49,379 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 12:45:21] 2025-10-13 10:44:49,379 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 12:45:21] 2025-10-13 10:44:49,379 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 12:45:21] 2025-10-13 10:44:49,379 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 12:45:21] 2025-10-13 10:44:49,379 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 12:45:21] 2025-10-13 10:44:49,379 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 12:45:21] 2025-10-13 10:44:49,379 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 12:45:21] 2025-10-13 10:44:49,379 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 12:45:21] 2025-10-13 10:44:49,379 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 12:45:21] 2025-10-13 10:44:49,379 | INFO     | job 6840429336 has completed (purged errors)
[2025-10-13 12:45:21] 2025-10-13 10:44:49,379 | INFO     | overall cleanup function is called
[2025-10-13 12:45:21] 2025-10-13 10:44:50,385 | INFO     | --- collectZombieJob: --- 10, [2811076]
[2025-10-13 12:45:21] 2025-10-13 10:44:50,386 | INFO     | zombie collector waiting for pid 2811076
[2025-10-13 12:45:21] 2025-10-13 10:44:50,386 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 12:45:21] 2025-10-13 10:44:50,386 | INFO     | collected zombie processes
[2025-10-13 12:45:21] 2025-10-13 10:44:50,386 | INFO     | will attempt to kill all subprocesses of pid=2811076
[2025-10-13 12:45:21] 2025-10-13 10:44:50,417 | INFO     | process IDs to be killed: [2811076] (in reverse order)
[2025-10-13 12:45:21] 2025-10-13 10:44:50,436 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 12:45:21] 2025-10-13 10:44:50,436 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 12:45:21] 2025-10-13 10:44:50,437 | INFO     | did not find any defunct processes belonging to 2811076
[2025-10-13 12:45:21] 2025-10-13 10:44:50,438 | INFO     | did not find any defunct processes belonging to 2811076
[2025-10-13 12:45:21] 2025-10-13 10:44:50,438 | INFO     | ready for new job
[2025-10-13 12:45:21] 2025-10-13 10:44:50,438 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 12:45:21] 2025-10-13 10:44:50,438 | INFO     | ***************************************
[2025-10-13 12:45:21] 2025-10-13 10:44:50,438 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 12:45:21] 2025-10-13 10:44:50,438 | INFO     | ***************************************
[2025-10-13 12:45:21] 2025-10-13 10:44:50,438 | INFO     | 
[2025-10-13 12:45:21] 2025-10-13 10:44:50,439 | INFO     | architecture information:
[2025-10-13 12:45:21] 2025-10-13 10:44:50,439 | INFO     | executing command: cat /etc/os-release
[2025-10-13 12:45:21] 2025-10-13 10:44:50,446 | INFO     | cat /etc/os-release:
[2025-10-13 12:45:21] NAME="CentOS Linux"
[2025-10-13 12:45:21] VERSION="7 (Core)"
[2025-10-13 12:45:21] ID="centos"
[2025-10-13 12:45:21] ID_LIKE="rhel fedora"
[2025-10-13 12:45:21] VERSION_ID="7"
[2025-10-13 12:45:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 12:45:21] ANSI_COLOR="0;31"
[2025-10-13 12:45:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 12:45:21] HOME_URL="https://www.centos.org/"
[2025-10-13 12:45:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 12:45:21] 
[2025-10-13 12:45:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 12:45:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 12:45:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 12:45:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 12:45:21] 
[2025-10-13 12:45:21] 2025-10-13 10:44:50,446 | INFO     | ***************************************
[2025-10-13 12:45:21] 2025-10-13 10:44:50,949 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 12:45:21] 2025-10-13 10:44:50,961 | INFO     | sufficient remaining disk space (831661277184 B)
[2025-10-13 12:45:21] 2025-10-13 10:44:50,961 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 12:45:21] 2025-10-13 10:44:50,961 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 12:45:21] 2025-10-13 10:44:50,961 | INFO     | update_server=False
[2025-10-13 12:45:21] 2025-10-13 10:44:50,961 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 12:45:21] 2025-10-13 10:44:50,962 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:45:21] 2025-10-13 10:44:51,029 | INFO     | all data control threads have been joined
[2025-10-13 12:45:21] 2025-10-13 10:44:51,377 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 12:45:21] 2025-10-13 10:44:51,930 | INFO     | all payload control threads have been joined
[2025-10-13 12:45:21] 2025-10-13 10:44:51,933 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:45:21] 2025-10-13 10:44:51,933 | INFO     | aborting loop
[2025-10-13 12:45:21] 2025-10-13 10:44:51,967 | INFO     | [job] retrieve thread has finished
[2025-10-13 12:45:21] 2025-10-13 10:44:51,968 | INFO     | [job] queue monitor thread has finished
[2025-10-13 12:45:21] 2025-10-13 10:44:52,035 | INFO     | [data] control thread has finished
[2025-10-13 12:45:21] 2025-10-13 10:44:52,291 | INFO     | all job control threads have been joined
[2025-10-13 12:45:21] 2025-10-13 10:44:52,568 | INFO     | [payload] validate_post thread has finished
[2025-10-13 12:45:21] 2025-10-13 10:44:52,936 | INFO     | [payload] control thread has finished
[2025-10-13 12:45:21] 2025-10-13 10:44:52,939 | INFO     | [job] job monitor thread has finished
[2025-10-13 12:45:21] 2025-10-13 10:44:53,141 | INFO     | [job] validate thread has finished
[2025-10-13 12:45:21] 2025-10-13 10:44:53,216 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 12:45:21] 2025-10-13 10:44:53,297 | INFO     | [job] control thread has finished
[2025-10-13 12:45:21] 2025-10-13 10:44:53,308 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 12:45:21] 2025-10-13 10:44:53,344 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 12:45:21] 2025-10-13 10:44:53,350 | INFO     | [data] copytool_in thread has finished
[2025-10-13 12:45:21] 2025-10-13 10:44:53,384 | INFO     | [data] copytool_out thread has finished
[2025-10-13 12:45:21] 2025-10-13 10:44:53,425 | INFO     | [payload] failed_post thread has finished
[2025-10-13 12:45:21] 2025-10-13 10:44:53,954 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 12:45:21] 2025-10-13 10:44:57,961 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 12:45:21] 2025-10-13 10:45:01,906 | INFO     | job.realtimelogging is not enabled
[2025-10-13 12:45:21] 2025-10-13 10:45:02,912 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 12:45:21] 2025-10-13 10:45:08,862 | INFO     | [monitor] cgroup control has ended
[2025-10-13 12:45:21] 2025-10-13 10:45:10,819 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140269054871360)>', '<ExcThread(monitor, started 140268565149440)>']
[2025-10-13 12:45:21] 2025-10-13 10:45:15,845 | INFO     | all workflow threads have been joined
[2025-10-13 12:45:21] 2025-10-13 10:45:15,846 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 12:45:21] 2025-10-13 10:45:15,847 | INFO     | traces error code: 0
[2025-10-13 12:45:21] 2025-10-13 10:45:15,847 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 12:45:21] 2025-10-13 10:45:20,953 | INFO     | PID=2804667 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 12:45:21] 2025-10-13 10:45:20,953 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 12:45:21] 2025-10-13 10:45:20,954 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 12:45:21] 2025-10-13 10:45:20,954 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 12:45:21] 2025-10-13 10:45:20,954 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 12:45:21] 2025-10-13 10:45:20,954 | INFO     | [monitor] control thread has ended
[2025-10-13 12:45:21] 2025-10-13 10:45:20,992 [wrapper] ==== pilot stdout END ====
[2025-10-13 12:45:21] 2025-10-13 10:45:20,994 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 12:45:21] 2025-10-13 10:45:20,996 [wrapper] pilotpid: 2804667
[2025-10-13 12:45:21] 2025-10-13 10:45:20,998 [wrapper] Pilot exit status: 0
[2025-10-13 12:45:21] 2025-10-13 10:45:21,003 [wrapper] pandaids: 6840429336
[2025-10-13 12:45:21] 2025-10-13 10:45:21,014 [wrapper] cleanup supervisor_pilot 2825670 2804668
[2025-10-13 12:45:21] 2025-10-13 10:45:21,016 [wrapper] Test setup, not cleaning
[2025-10-13 12:45:21] 2025-10-13 10:45:21,018 [wrapper] apfmon messages muted
[2025-10-13 12:45:21] 2025-10-13 10:45:21,019 [wrapper] ==== wrapper stdout END ====
[2025-10-13 12:45:21] 2025-10-13 10:45:21,021 [wrapper] ==== wrapper stderr END ====
[2025-10-13 12:45:21]  *** Error codes and diagnostics ***
[2025-10-13 12:45:21]     "exeErrorCode": 0,
[2025-10-13 12:45:21]     "exeErrorDiag": "",
[2025-10-13 12:45:21]     "pilotErrorCode": 0,
[2025-10-13 12:45:21]     "pilotErrorDiag": "",
[2025-10-13 12:45:21]  *** Listing of results directory ***
[2025-10-13 12:45:21] total 414012
[2025-10-13 12:45:21] -rw-r--r-- 1 boinc boinc    557409 Oct 12 19:17 pilot3.tar.gz
[2025-10-13 12:45:21] -rw-r--r-- 1 boinc boinc      5112 Oct 12 19:19 queuedata.json
[2025-10-13 12:45:21] -rwx------ 1 boinc boinc     36292 Oct 12 19:19 runpilot2-wrapper.sh
[2025-10-13 12:45:21] -rw-r--r-- 1 boinc boinc       100 Oct 13 10:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 12:45:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 10:38 run_atlas
[2025-10-13 12:45:21] -rw-r--r-- 1 boinc boinc       105 Oct 13 10:38 job.xml
[2025-10-13 12:45:21] -rw-r--r-- 2 boinc boinc 221512634 Oct 13 10:38 EVNT.46676267._004812.pool.root.1
[2025-10-13 12:45:21] -rw-r--r-- 2 boinc boinc    569680 Oct 13 10:38 input.tar.gz
[2025-10-13 12:45:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:38 start_atlas.sh
[2025-10-13 12:45:21] drwxrwx--x 2 boinc boinc      4096 Oct 13 10:38 shared
[2025-10-13 12:45:21] -rw-r--r-- 1 boinc boinc         0 Oct 13 10:38 boinc_setup_complete
[2025-10-13 12:45:21] -rw-r--r-- 1 boinc boinc      6281 Oct 13 10:38 init_data.xml
[2025-10-13 12:45:21] -rw-r--r-- 1 boinc boinc         0 Oct 13 10:38 boinc_lockfile
[2025-10-13 12:45:21] -rw-r--r-- 1 boinc boinc      2550 Oct 13 10:38 pandaJob.out
[2025-10-13 12:45:21] -rw------- 1 boinc boinc    972857 Oct 13 10:38 agis_schedconf.cvmfs.json
[2025-10-13 12:45:21] -rw------- 1 boinc boinc   1560580 Oct 13 10:38 agis_ddmendpoints.agis.ALL.json
[2025-10-13 12:45:21] drwx------ 5 boinc boinc      4096 Oct 13 10:38 pilot3
[2025-10-13 12:45:21] -rw------- 1 boinc boinc 195827074 Oct 13 12:44 HITS.46676269._084682.pool.root.1
[2025-10-13 12:45:21] -rw-r--r-- 1 boinc boinc       529 Oct 13 12:44 boinc_task_state.xml
[2025-10-13 12:45:21] -rw------- 1 boinc boinc        95 Oct 13 12:44 pilot_heartbeat.json
[2025-10-13 12:45:21] -rw------- 1 boinc boinc      1029 Oct 13 12:44 memory_monitor_summary.json
[2025-10-13 12:45:21] -rw------- 1 boinc boinc    273680 Oct 13 12:44 log.46676269._084682.job.log.tgz.1
[2025-10-13 12:45:21] -rw------- 1 boinc boinc      7752 Oct 13 12:44 heartbeat.json
[2025-10-13 12:45:21] -rw-r--r-- 1 boinc boinc      8192 Oct 13 12:45 boinc_mmap_file
[2025-10-13 12:45:21] -rw-r--r-- 1 boinc boinc        27 Oct 13 12:45 wrapper_checkpoint.txt
[2025-10-13 12:45:21] -rw------- 1 boinc boinc       747 Oct 13 12:45 pilotlog.txt
[2025-10-13 12:45:21] -rw------- 1 boinc boinc   1088406 Oct 13 12:45 log.46676269._084682.job.log.1
[2025-10-13 12:45:21] -rw------- 1 boinc boinc       357 Oct 13 12:45 output.list
[2025-10-13 12:45:21] -rw-r--r-- 1 boinc boinc       620 Oct 13 12:45 runtime_log
[2025-10-13 12:45:21] -rw------- 1 boinc boinc   1382400 Oct 13 12:45 result.tar.gz
[2025-10-13 12:45:21] -rw------- 1 boinc boinc       659 Oct 13 12:45 vbkKDmTuES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBrkNDmNdwlMo.diag
[2025-10-13 12:45:21] -rw-r--r-- 1 boinc boinc      8777 Oct 13 12:45 runtime_log.err
[2025-10-13 12:45:21] -rw-r--r-- 1 boinc boinc     12128 Oct 13 12:45 stderr.txt
[2025-10-13 12:45:21] HITS file was successfully produced:
[2025-10-13 12:45:21] -rw------- 1 boinc boinc 195827074 Oct 13 12:44 shared/HITS.pool.root.1
[2025-10-13 12:45:21]  *** Contents of shared directory: ***
[2025-10-13 12:45:21] total 409496
[2025-10-13 12:45:21] -rw-r--r-- 2 boinc boinc 221512634 Oct 13 10:38 ATLAS.root_0
[2025-10-13 12:45:21] -rw-r--r-- 2 boinc boinc    569680 Oct 13 10:38 input.tar.gz
[2025-10-13 12:45:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:38 start_atlas.sh
[2025-10-13 12:45:21] -rw------- 1 boinc boinc 195827074 Oct 13 12:44 HITS.pool.root.1
[2025-10-13 12:45:21] -rw------- 1 boinc boinc   1382400 Oct 13 12:45 result.tar.gz
12:45:22 (2800966): run_atlas exited; CPU time 14674.111951
12:45:22 (2800966): called boinc_finish(0)

</stderr_txt>
]]>

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