Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:32:09 (20759): wrapper (7.7.26015): starting
09:32:09 (20759): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 09:32:09] Arguments: --nthreads 8
[2025-10-13 09:32:09] Threads: 8
[2025-10-13 09:32:09] Checking for CVMFS
[2025-10-13 09:32:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 09:32:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 09:32:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 09:32:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 09:32:12] 2.11.2.0 25379 221664 134904 151653 1 60 16936486 25165825 4632 130560 0 123935421 99.894 67904260 3547 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-13 09:32:12] CVMFS is ok
[2025-10-13 09:32:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 09:32:12] Checking for apptainer binary...
[2025-10-13 09:32:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 09:32:12] Running /usr/bin/apptainer --version
[2025-10-13 09:32:12] apptainer version 1.3.2-1.el7
[2025-10-13 09:32:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 09:32:24] cg-vwn336.simple-grid.lan
[2025-10-13 09:32:24] apptainer works
[2025-10-13 09:32:24] Set ATHENA_PROC_NUMBER=8
[2025-10-13 09:32:24] Set ATHENA_CORE_NUMBER=8
[2025-10-13 09:32:24] Starting ATLAS job with PandaID=6840429387
[2025-10-13 09:32:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 13:42:51]  *** The last 200 lines of the pilot log: ***
[2025-10-13 13:42:51] 2025-10-13 11:41:57,899 | INFO     | monitor loop #1074: job 0:6840429387 is in state 'finished'
[2025-10-13 13:42:51] 2025-10-13 11:41:57,899 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 13:42:51] 2025-10-13 11:41:58,156 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 13:42:51] 2025-10-13 11:41:58,157 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-10-13 13:42:51] 2025-10-13 11:41:58,159 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6840429387/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 13:42:51] 2025-10-13 11:41:58,160 | INFO     | extracted standard info from prmon json
[2025-10-13 13:42:51] 2025-10-13 11:41:58,160 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 13:42:51] 2025-10-13 11:41:58,160 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 13:42:51] 2025-10-13 11:41:58,161 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 13:42:51] 2025-10-13 11:41:58,161 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 13:42:51] 2025-10-13 11:41:58,166 | INFO     | fitting pss+swap vs Time
[2025-10-13 13:42:51] 2025-10-13 11:41:58,167 | INFO     | sum of square deviations: 3922276332.0
[2025-10-13 13:42:51] 2025-10-13 11:41:58,168 | INFO     | sum of deviations: 38754828843.000015
[2025-10-13 13:42:51] 2025-10-13 11:41:58,169 | INFO     | mean x: 1760348516.0
[2025-10-13 13:42:51] 2025-10-13 11:41:58,169 | INFO     | mean y: 2466585.2017167383
[2025-10-13 13:42:51] 2025-10-13 11:41:58,169 | INFO     | -- intersect: -17391005895.31118
[2025-10-13 13:42:51] 2025-10-13 11:41:58,169 | INFO     | intersect: -17391005895.31118
[2025-10-13 13:42:51] 2025-10-13 11:41:58,169 | INFO     | chi2: 5.1045724739596645
[2025-10-13 13:42:51] 2025-10-13 11:41:58,179 | INFO     | sum of square deviations: 3675146117.0
[2025-10-13 13:42:51] 2025-10-13 11:41:58,181 | INFO     | sum of deviations: 53058374436.99999
[2025-10-13 13:42:51] 2025-10-13 11:41:58,181 | INFO     | mean x: 1760348363.5
[2025-10-13 13:42:51] 2025-10-13 11:41:58,182 | INFO     | mean y: 2475246.6315789474
[2025-10-13 13:42:51] 2025-10-13 11:41:58,182 | INFO     | -- intersect: -25411812957.611584
[2025-10-13 13:42:51] 2025-10-13 11:41:58,182 | INFO     | intersect: -25411812957.611584
[2025-10-13 13:42:51] 2025-10-13 11:41:58,182 | INFO     | chi2: 4.376369063510443
[2025-10-13 13:42:51] 2025-10-13 11:41:58,182 | INFO     | current chi2=4.376369063510443 (change=14.265708130584102 %)
[2025-10-13 13:42:51] 2025-10-13 11:41:58,182 | INFO     | right removable region: 227
[2025-10-13 13:42:51] 2025-10-13 11:41:58,183 | INFO     | sum of square deviations: 3675146117.0
[2025-10-13 13:42:51] 2025-10-13 11:41:58,185 | INFO     | sum of deviations: -34403448926.0
[2025-10-13 13:42:51] 2025-10-13 11:41:58,185 | INFO     | mean x: 1760348668.5
[2025-10-13 13:42:51] 2025-10-13 11:41:58,185 | INFO     | mean y: 2511648.210526316
[2025-10-13 13:42:51] 2025-10-13 11:41:58,185 | INFO     | -- intersect: 16481330062.681705
[2025-10-13 13:42:51] 2025-10-13 11:41:58,185 | INFO     | intersect: 16481330062.681705
[2025-10-13 13:42:51] 2025-10-13 11:41:58,186 | INFO     | chi2: 1.261179689735924
[2025-10-13 13:42:51] 2025-10-13 11:41:58,186 | INFO     | current chi2=1.261179689735924 (change=75.29313774719286 %)
[2025-10-13 13:42:51] 2025-10-13 11:41:58,186 | INFO     | sum of square deviations: 3438620752.0
[2025-10-13 13:42:51] 2025-10-13 11:41:58,188 | INFO     | sum of deviations: -47744230300.0
[2025-10-13 13:42:51] 2025-10-13 11:41:58,188 | INFO     | mean x: 1760348821.0
[2025-10-13 13:42:51] 2025-10-13 11:41:58,188 | INFO     | mean y: 2520130.147982063
[2025-10-13 13:42:51] 2025-10-13 11:41:58,188 | INFO     | -- intersect: 24444441929.54201
[2025-10-13 13:42:51] 2025-10-13 11:41:58,188 | INFO     | intersect: 24444441929.54201
[2025-10-13 13:42:51] 2025-10-13 11:41:58,189 | INFO     | chi2: 0.9587117880904856
[2025-10-13 13:42:51] 2025-10-13 11:41:58,189 | INFO     | current chi2=0.9587117880904856 (change=23.98293471636635 %)
[2025-10-13 13:42:51] 2025-10-13 11:41:58,189 | INFO     | left removable region: 20
[2025-10-13 13:42:51] 2025-10-13 11:41:58,189 | INFO     | sum of square deviations: 2750295288.0
[2025-10-13 13:42:51] 2025-10-13 11:41:58,191 | INFO     | sum of deviations: -18528863886.999996
[2025-10-13 13:42:51] 2025-10-13 11:41:58,191 | INFO     | mean x: 1760348943.0
[2025-10-13 13:42:51] 2025-10-13 11:41:58,191 | INFO     | mean y: 2520571.6038647345
[2025-10-13 13:42:51] 2025-10-13 11:41:58,191 | INFO     | -- intersect: 11862071108.153856
[2025-10-13 13:42:51] 2025-10-13 11:41:58,191 | INFO     | intersect: 11862071108.153856
[2025-10-13 13:42:51] 2025-10-13 11:41:58,192 | INFO     | chi2: 0.13636286093780042
[2025-10-13 13:42:51] 2025-10-13 11:41:58,192 | INFO     | -- intersect: 11862071108.153856
[2025-10-13 13:42:51] 2025-10-13 11:41:58,192 | INFO     | current memory leak: -6.74 B/s (using 207 data points, chi2=0.14)
[2025-10-13 13:42:51] 2025-10-13 11:41:58,192 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-13 13:42:51] 2025-10-13 11:41:58,193 | INFO     | ..............................
[2025-10-13 13:42:51] 2025-10-13 11:41:58,193 | INFO     | . Timing measurements:
[2025-10-13 13:42:51] 2025-10-13 11:41:58,193 | INFO     | . get job = 0 s
[2025-10-13 13:42:51] 2025-10-13 11:41:58,193 | INFO     | . initial setup = 6 s
[2025-10-13 13:42:51] 2025-10-13 11:41:58,193 | INFO     | . payload setup = 121 s
[2025-10-13 13:42:51] 2025-10-13 11:41:58,193 | INFO     | . stage-in = 0 s
[2025-10-13 13:42:51] 2025-10-13 11:41:58,193 | INFO     | . payload execution = 14319 s
[2025-10-13 13:42:51] 2025-10-13 11:41:58,193 | INFO     | . stage-out = 4 s
[2025-10-13 13:42:51] 2025-10-13 11:41:58,193 | INFO     | . log creation = 1 s
[2025-10-13 13:42:51] 2025-10-13 11:41:58,193 | INFO     | ..............................
[2025-10-13 13:42:51] 2025-10-13 11:41:58,340 | INFO     | 
[2025-10-13 13:42:51] 2025-10-13 11:41:58,341 | INFO     | job summary report
[2025-10-13 13:42:51] 2025-10-13 11:41:58,341 | INFO     | --------------------------------------------------
[2025-10-13 13:42:51] 2025-10-13 11:41:58,341 | INFO     | PanDA job id: 6840429387
[2025-10-13 13:42:51] 2025-10-13 11:41:58,341 | INFO     | task id: 46676269
[2025-10-13 13:42:51] 2025-10-13 11:41:58,341 | INFO     | errors: (none)
[2025-10-13 13:42:51] 2025-10-13 11:41:58,341 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 13:42:51] 2025-10-13 11:41:58,341 | INFO     | pilot state: finished 
[2025-10-13 13:42:51] 2025-10-13 11:41:58,341 | INFO     | transexitcode: 0
[2025-10-13 13:42:51] 2025-10-13 11:41:58,342 | INFO     | exeerrorcode: 0
[2025-10-13 13:42:51] 2025-10-13 11:41:58,342 | INFO     | exeerrordiag: 
[2025-10-13 13:42:51] 2025-10-13 11:41:58,342 | INFO     | exitcode: 0
[2025-10-13 13:42:51] 2025-10-13 11:41:58,342 | INFO     | exitmsg: OK
[2025-10-13 13:42:51] 2025-10-13 11:41:58,342 | INFO     | cpuconsumptiontime: 54007 s
[2025-10-13 13:42:51] 2025-10-13 11:41:58,342 | INFO     | nevents: 400
[2025-10-13 13:42:51] 2025-10-13 11:41:58,342 | INFO     | neventsw: 0
[2025-10-13 13:42:51] 2025-10-13 11:41:58,342 | INFO     | pid: 31188
[2025-10-13 13:42:51] 2025-10-13 11:41:58,342 | INFO     | pgrp: 31188
[2025-10-13 13:42:51] 2025-10-13 11:41:58,342 | INFO     | corecount: 8
[2025-10-13 13:42:51] 2025-10-13 11:41:58,342 | INFO     | event service: False
[2025-10-13 13:42:51] 2025-10-13 11:41:58,342 | INFO     | sizes: {0: 2348029, 1: 2348885, 2: 2348913, 12: 2348913, 23: 2348941, 34: 2348969, 45: 2349125, 55: 2349153, 66: 2349181, 77: 2349209, 88: 2349265, 92: 2349835, 98
[2025-10-13 13:42:51] 2025-10-13 11:41:58,344 | INFO     | --------------------------------------------------
[2025-10-13 13:42:51] 2025-10-13 11:41:58,344 | INFO     | 
[2025-10-13 13:42:51] 2025-10-13 11:41:58,344 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-10-13 13:42:51] 2025-10-13 11:41:58,967 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,967 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,968 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,968 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,968 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,968 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,968 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,968 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,968 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,968 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,968 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,969 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,969 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,969 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,969 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,969 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,969 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,969 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 13:42:51] 2025-10-13 11:41:58,969 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,969 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 13:42:51] 2025-10-13 11:41:58,969 | INFO     | job 6840429387 has completed (purged errors)
[2025-10-13 13:42:51] 2025-10-13 11:41:58,970 | INFO     | overall cleanup function is called
[2025-10-13 13:42:51] 2025-10-13 11:41:59,979 | INFO     | --- collectZombieJob: --- 10, [31188]
[2025-10-13 13:42:51] 2025-10-13 11:41:59,979 | INFO     | zombie collector waiting for pid 31188
[2025-10-13 13:42:51] 2025-10-13 11:41:59,979 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 13:42:51] 2025-10-13 11:41:59,979 | INFO     | collected zombie processes
[2025-10-13 13:42:51] 2025-10-13 11:41:59,979 | INFO     | will attempt to kill all subprocesses of pid=31188
[2025-10-13 13:42:51] 2025-10-13 11:42:00,084 | INFO     | process IDs to be killed: [31188] (in reverse order)
[2025-10-13 13:42:51] 2025-10-13 11:42:00,154 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 13:42:51] 2025-10-13 11:42:00,155 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 13:42:51] 2025-10-13 11:42:00,158 | INFO     | did not find any defunct processes belonging to 31188
[2025-10-13 13:42:51] 2025-10-13 11:42:00,161 | INFO     | did not find any defunct processes belonging to 31188
[2025-10-13 13:42:51] 2025-10-13 11:42:00,162 | INFO     | ready for new job
[2025-10-13 13:42:51] 2025-10-13 11:42:00,162 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 13:42:51] 2025-10-13 11:42:00,164 | INFO     | ***************************************
[2025-10-13 13:42:51] 2025-10-13 11:42:00,164 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 13:42:51] 2025-10-13 11:42:00,164 | INFO     | ***************************************
[2025-10-13 13:42:51] 2025-10-13 11:42:00,164 | INFO     | 
[2025-10-13 13:42:51] 2025-10-13 11:42:00,165 | INFO     | pilot is running in a VM
[2025-10-13 13:42:51] 2025-10-13 11:42:00,165 | INFO     | architecture information:
[2025-10-13 13:42:51] 2025-10-13 11:42:00,174 | INFO     | executing command: cat /etc/os-release
[2025-10-13 13:42:51] 2025-10-13 11:42:00,400 | INFO     | cat /etc/os-release:
[2025-10-13 13:42:51] NAME="CentOS Linux"
[2025-10-13 13:42:51] VERSION="7 (Core)"
[2025-10-13 13:42:51] ID="centos"
[2025-10-13 13:42:51] ID_LIKE="rhel fedora"
[2025-10-13 13:42:51] VERSION_ID="7"
[2025-10-13 13:42:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 13:42:51] ANSI_COLOR="0;31"
[2025-10-13 13:42:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 13:42:51] HOME_URL="https://www.centos.org/"
[2025-10-13 13:42:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 13:42:51] 
[2025-10-13 13:42:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 13:42:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 13:42:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 13:42:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 13:42:51] 
[2025-10-13 13:42:51] 2025-10-13 11:42:00,401 | INFO     | ***************************************
[2025-10-13 13:42:51] 2025-10-13 11:42:00,904 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-13 13:42:51] 2025-10-13 11:42:01,167 | INFO     | sufficient remaining disk space (496197697536 B)
[2025-10-13 13:42:51] 2025-10-13 11:42:01,167 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 13:42:51] 2025-10-13 11:42:01,167 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 13:42:51] 2025-10-13 11:42:01,167 | INFO     | update_server=False
[2025-10-13 13:42:51] 2025-10-13 11:42:01,167 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 13:42:51] 2025-10-13 11:42:01,412 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:42:51] 2025-10-13 11:42:01,412 | INFO     | aborting loop
[2025-10-13 13:42:51] 2025-10-13 11:42:01,609 | INFO     | all data control threads have been joined
[2025-10-13 13:42:51] 2025-10-13 11:42:01,885 | INFO     | all payload control threads have been joined
[2025-10-13 13:42:51] 2025-10-13 11:42:01,959 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 13:42:51] 2025-10-13 11:42:02,173 | INFO     | [job] retrieve thread has finished
[2025-10-13 13:42:51] 2025-10-13 11:42:02,180 | INFO     | [payload] validate_post thread has finished
[2025-10-13 13:42:51] 2025-10-13 11:42:02,255 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 13:42:51] 2025-10-13 11:42:02,357 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 13:42:51] 2025-10-13 11:42:02,418 | INFO     | [job] job monitor thread has finished
[2025-10-13 13:42:51] 2025-10-13 11:42:02,615 | INFO     | [data] control thread has finished
[2025-10-13 13:42:51] 2025-10-13 11:42:02,800 | INFO     | all job control threads have been joined
[2025-10-13 13:42:51] 2025-10-13 11:42:02,891 | INFO     | [payload] control thread has finished
[2025-10-13 13:42:51] 2025-10-13 11:42:02,950 | INFO     | [payload] failed_post thread has finished
[2025-10-13 13:42:51] 2025-10-13 11:42:03,023 | INFO     | [job] validate thread has finished
[2025-10-13 13:42:51] 2025-10-13 11:42:03,080 | INFO     | [data] copytool_in thread has finished
[2025-10-13 13:42:51] 2025-10-13 11:42:03,356 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:42:51] 2025-10-13 11:42:03,394 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 13:42:51] 2025-10-13 11:42:03,531 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 13:42:51] 2025-10-13 11:42:03,694 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 13:42:51] 2025-10-13 11:42:03,806 | INFO     | [job] control thread has finished
[2025-10-13 13:42:51] 2025-10-13 11:42:03,966 | INFO     | [data] copytool_out thread has finished
[2025-10-13 13:42:51] 2025-10-13 11:42:04,362 | INFO     | [job] queue monitor thread has finished
[2025-10-13 13:42:51] 2025-10-13 11:42:07,703 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 13:42:51] 2025-10-13 11:42:30,561 | INFO     | PID=24582 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 13:42:51] 2025-10-13 11:42:30,562 | INFO     | .. there are 9 such processes running
[2025-10-13 13:42:51] 2025-10-13 11:42:30,563 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 13:42:51] 2025-10-13 11:42:30,563 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 13:42:51] 2025-10-13 11:42:30,563 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 13:42:51] 2025-10-13 11:42:40,513 | INFO     | [monitor] cgroup control has ended
[2025-10-13 13:42:51] 2025-10-13 11:42:41,381 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139816812758848)>', '<ExcThread(monitor, started 139815899076352)>']
[2025-10-13 13:42:51] 2025-10-13 11:42:41,628 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 13:42:51] 2025-10-13 11:42:41,628 | INFO     | [monitor] control thread has ended
[2025-10-13 13:42:51] 2025-10-13 11:42:46,407 | INFO     | all workflow threads have been joined
[2025-10-13 13:42:51] 2025-10-13 11:42:46,407 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 13:42:51] 2025-10-13 11:42:46,407 | INFO     | traces error code: 0
[2025-10-13 13:42:51] 2025-10-13 11:42:46,408 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 13:42:51] 2025-10-13 11:42:46,813 [wrapper] ==== pilot stdout END ====
[2025-10-13 13:42:51] 2025-10-13 11:42:46,942 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 13:42:51] 2025-10-13 11:42:47,061 [wrapper] pilotpid: 24582
[2025-10-13 13:42:51] 2025-10-13 11:42:47,181 [wrapper] Pilot exit status: 0
[2025-10-13 13:42:51] 2025-10-13 11:42:47,675 [wrapper] pandaids: 6840429387
[2025-10-13 13:42:51] 2025-10-13 11:42:48,578 [wrapper] cleanup supervisor_pilot  8283 24583
[2025-10-13 13:42:51] 2025-10-13 11:42:48,651 [wrapper] Test setup, not cleaning
[2025-10-13 13:42:51] 2025-10-13 11:42:48,759 [wrapper] apfmon messages muted
[2025-10-13 13:42:51] 2025-10-13 11:42:48,824 [wrapper] ==== wrapper stdout END ====
[2025-10-13 13:42:51] 2025-10-13 11:42:48,943 [wrapper] ==== wrapper stderr END ====
[2025-10-13 13:42:51]  *** Error codes and diagnostics ***
[2025-10-13 13:42:51]     "exeErrorCode": 0,
[2025-10-13 13:42:51]     "exeErrorDiag": "",
[2025-10-13 13:42:51]     "pilotErrorCode": 0,
[2025-10-13 13:42:51]     "pilotErrorDiag": "",
[2025-10-13 13:42:51]  *** Listing of results directory ***
[2025-10-13 13:42:51] total 418484
[2025-10-13 13:42:51] -rw-r--r--. 1 boinc boinc    557409 Oct 12 19:17 pilot3.tar.gz
[2025-10-13 13:42:51] -rw-r--r--. 1 boinc boinc      5112 Oct 12 19:24 queuedata.json
[2025-10-13 13:42:51] -rwx------. 1 boinc boinc     36292 Oct 12 19:24 runpilot2-wrapper.sh
[2025-10-13 13:42:51] -rw-r--r--. 1 boinc boinc       100 Oct 13 09:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 13:42:51] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 09:32 run_atlas
[2025-10-13 13:42:51] -rw-r--r--. 1 boinc boinc       105 Oct 13 09:32 job.xml
[2025-10-13 13:42:51] -rw-r--r--. 1 boinc boinc      6389 Oct 13 09:32 init_data.xml
[2025-10-13 13:42:51] -rw-r--r--. 2 boinc boinc 221045243 Oct 13 09:32 EVNT.46676267._004814.pool.root.1
[2025-10-13 13:42:51] -rw-r--r--. 2 boinc boinc     15120 Oct 13 09:32 start_atlas.sh
[2025-10-13 13:42:51] drwxrwx--x. 2 boinc boinc        68 Oct 13 09:32 shared
[2025-10-13 13:42:51] -rw-r--r--. 2 boinc boinc    569675 Oct 13 09:32 input.tar.gz
[2025-10-13 13:42:51] -rw-r--r--. 1 boinc boinc         0 Oct 13 09:32 boinc_lockfile
[2025-10-13 13:42:51] -rw-r--r--. 1 boinc boinc      2550 Oct 13 09:32 pandaJob.out
[2025-10-13 13:42:51] -rw-------. 1 boinc boinc    972849 Oct 13 09:36 agis_schedconf.cvmfs.json
[2025-10-13 13:42:51] drwx------. 5 boinc boinc      4096 Oct 13 09:36 pilot3
[2025-10-13 13:42:51] -rw-------. 1 boinc boinc 198736044 Oct 13 13:38 HITS.46676269._084733.pool.root.1
[2025-10-13 13:42:51] -rw-r--r--. 1 boinc boinc       531 Oct 13 13:39 boinc_task_state.xml
[2025-10-13 13:42:51] -rw-------. 1 boinc boinc      1018 Oct 13 13:40 memory_monitor_summary.json
[2025-10-13 13:42:51] -rw-------. 1 boinc boinc   1560580 Oct 13 13:40 agis_ddmendpoints.agis.ALL.json
[2025-10-13 13:42:51] -rw-------. 1 boinc boinc    459340 Oct 13 13:40 log.46676269._084733.job.log.tgz.1
[2025-10-13 13:42:51] -rw-------. 1 boinc boinc      7784 Oct 13 13:41 heartbeat.json
[2025-10-13 13:42:51] -rw-------. 1 boinc boinc        95 Oct 13 13:42 pilot_heartbeat.json
[2025-10-13 13:42:51] -rw-r--r--. 1 boinc boinc      8192 Oct 13 13:42 boinc_mmap_file
[2025-10-13 13:42:51] -rw-r--r--. 1 boinc boinc        28 Oct 13 13:42 wrapper_checkpoint.txt
[2025-10-13 13:42:51] -rw-------. 1 boinc boinc      4884 Oct 13 13:42 pilotlog.txt
[2025-10-13 13:42:51] -rw-------. 1 boinc boinc   1968755 Oct 13 13:42 log.46676269._084733.job.log.1
[2025-10-13 13:42:51] -rw-------. 1 boinc boinc       357 Oct 13 13:42 output.list
[2025-10-13 13:42:51] -rw-r--r--. 1 boinc boinc       620 Oct 13 13:42 runtime_log
[2025-10-13 13:42:51] -rw-------. 1 boinc boinc   2447360 Oct 13 13:42 result.tar.gz
[2025-10-13 13:42:51] -rw-r--r--. 1 boinc boinc      8703 Oct 13 13:42 runtime_log.err
[2025-10-13 13:42:51] -rw-------. 1 boinc boinc       656 Oct 13 13:42 5B0KDmRzES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1skNDmz8dsun.diag
[2025-10-13 13:42:51] -rw-r--r--. 1 boinc boinc     20814 Oct 13 13:42 stderr.txt
[2025-10-13 13:42:51] HITS file was successfully produced:
[2025-10-13 13:42:51] -rw-------. 1 boinc boinc 198736044 Oct 13 13:38 shared/HITS.pool.root.1
[2025-10-13 13:42:51]  *** Contents of shared directory: ***
[2025-10-13 13:42:51] total 412916
[2025-10-13 13:42:51] -rw-r--r--. 2 boinc boinc 221045243 Oct 13 09:32 ATLAS.root_0
[2025-10-13 13:42:51] -rw-r--r--. 2 boinc boinc     15120 Oct 13 09:32 start_atlas.sh
[2025-10-13 13:42:51] -rw-r--r--. 2 boinc boinc    569675 Oct 13 09:32 input.tar.gz
[2025-10-13 13:42:51] -rw-------. 1 boinc boinc 198736044 Oct 13 13:38 HITS.pool.root.1
[2025-10-13 13:42:51] -rw-------. 1 boinc boinc   2447360 Oct 13 13:42 result.tar.gz
13:42:52 (20759): run_atlas exited; CPU time 54197.740158
13:42:52 (20759): called boinc_finish(0)

</stderr_txt>
]]>

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