Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:26:37 (3191707): wrapper (7.7.26015): starting
11:26:37 (3191707): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 11:26:37] Arguments: --nthreads 3
[2025-10-13 11:26:37] Threads: 3
[2025-10-13 11:26:37] Checking for CVMFS
[2025-10-13 11:26:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 11:26:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 11:26:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 11:26:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 11:26:38] 2.9.2.0 1568863 5465 83652 151656 0 57 28612687 36864000 0 130560 0 4268863 99.991 190523 857 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 11:26:38] CVMFS is ok
[2025-10-13 11:26:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 11:26:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 11:26:38] Further information can be found at the LHC@home message board.
[2025-10-13 11:26:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 11:26:38] Checking for apptainer binary...
[2025-10-13 11:26:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 11:26:38] Running /usr/bin/apptainer --version
[2025-10-13 11:26:38] apptainer version 1.4.1-1.1
[2025-10-13 11:26:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 11:26:38] madmaxA273
[2025-10-13 11:26:38] apptainer works
[2025-10-13 11:26:38] Set ATHENA_PROC_NUMBER=3
[2025-10-13 11:26:38] Set ATHENA_CORE_NUMBER=3
[2025-10-13 11:26:38] Starting ATLAS job with PandaID=6840428577
[2025-10-13 11:26:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 12:52:09]  *** The last 200 lines of the pilot log: ***
[2025-10-13 12:52:09] 2025-10-13 10:51:38,681 | INFO     | will attempt to kill all subprocesses of pid=3201854
[2025-10-13 12:52:09] 2025-10-13 10:51:38,723 | INFO     | process IDs to be killed: [3201854] (in reverse order)
[2025-10-13 12:52:09] 2025-10-13 10:51:38,746 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 12:52:09] 2025-10-13 10:51:38,747 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 12:52:09] 2025-10-13 10:51:38,748 | INFO     | did not find any defunct processes belonging to 3201854
[2025-10-13 12:52:09] 2025-10-13 10:51:38,749 | INFO     | did not find any defunct processes belonging to 3201854
[2025-10-13 12:52:09] 2025-10-13 10:51:38,749 | INFO     | ready for new job
[2025-10-13 12:52:09] 2025-10-13 10:51:38,749 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 12:52:09] 2025-10-13 10:51:38,750 | INFO     | ***************************************
[2025-10-13 12:52:09] 2025-10-13 10:51:38,750 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 12:52:09] 2025-10-13 10:51:38,750 | INFO     | ***************************************
[2025-10-13 12:52:09] 2025-10-13 10:51:38,750 | INFO     | 
[2025-10-13 12:52:09] 2025-10-13 10:51:38,751 | INFO     | architecture information:
[2025-10-13 12:52:09] 2025-10-13 10:51:38,751 | INFO     | executing command: cat /etc/os-release
[2025-10-13 12:52:09] 2025-10-13 10:51:38,759 | INFO     | cat /etc/os-release:
[2025-10-13 12:52:09] NAME="CentOS Linux"
[2025-10-13 12:52:09] VERSION="7 (Core)"
[2025-10-13 12:52:09] ID="centos"
[2025-10-13 12:52:09] ID_LIKE="rhel fedora"
[2025-10-13 12:52:09] VERSION_ID="7"
[2025-10-13 12:52:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 12:52:09] ANSI_COLOR="0;31"
[2025-10-13 12:52:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 12:52:09] HOME_URL="https://www.centos.org/"
[2025-10-13 12:52:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 12:52:09] 
[2025-10-13 12:52:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 12:52:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 12:52:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 12:52:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 12:52:09] 
[2025-10-13 12:52:09] 2025-10-13 10:51:38,759 | INFO     | ***************************************
[2025-10-13 12:52:09] 2025-10-13 10:51:39,262 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 12:52:09] 2025-10-13 10:51:39,275 | INFO     | sufficient remaining disk space (331438096384 B)
[2025-10-13 12:52:09] 2025-10-13 10:51:39,275 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 12:52:09] 2025-10-13 10:51:39,275 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 12:52:09] 2025-10-13 10:51:39,275 | INFO     | update_server=False
[2025-10-13 12:52:09] 2025-10-13 10:51:39,275 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 12:52:09] 2025-10-13 10:51:39,275 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:52:09] 2025-10-13 10:51:39,276 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 12:52:09] 2025-10-13 10:51:39,276 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:52:09] 2025-10-13 10:51:39,276 | INFO     | aborting loop
[2025-10-13 12:52:09] 2025-10-13 10:51:39,697 | INFO     | all job control threads have been joined
[2025-10-13 12:52:09] 2025-10-13 10:51:39,759 | INFO     | all payload control threads have been joined
[2025-10-13 12:52:09] 2025-10-13 10:51:39,989 | INFO     | all data control threads have been joined
[2025-10-13 12:52:09] 2025-10-13 10:51:40,278 | INFO     | [job] retrieve thread has finished
[2025-10-13 12:52:09] 2025-10-13 10:51:40,281 | INFO     | [job] queue monitor thread has finished
[2025-10-13 12:52:09] 2025-10-13 10:51:40,281 | INFO     | [job] job monitor thread has finished
[2025-10-13 12:52:09] 2025-10-13 10:51:40,308 | INFO     | [payload] validate_post thread has finished
[2025-10-13 12:52:09] 2025-10-13 10:51:40,327 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 12:52:09] 2025-10-13 10:51:40,369 | INFO     | [payload] failed_post thread has finished
[2025-10-13 12:52:09] 2025-10-13 10:51:40,702 | INFO     | [job] control thread has finished
[2025-10-13 12:52:09] 2025-10-13 10:51:40,764 | INFO     | [payload] control thread has finished
[2025-10-13 12:52:09] 2025-10-13 10:51:40,995 | INFO     | [data] control thread has finished
[2025-10-13 12:52:09] 2025-10-13 10:51:41,121 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 12:52:09] 2025-10-13 10:51:41,161 | INFO     | [data] copytool_in thread has finished
[2025-10-13 12:52:09] 2025-10-13 10:51:41,179 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 12:52:09] 2025-10-13 10:51:41,230 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 12:52:09] 2025-10-13 10:51:41,281 | INFO     | [data] copytool_out thread has finished
[2025-10-13 12:52:09] 2025-10-13 10:51:41,667 | INFO     | [job] validate thread has finished
[2025-10-13 12:52:09] 2025-10-13 10:51:41,674 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 12:52:09] 2025-10-13 10:51:45,128 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 12:52:09] 2025-10-13 10:51:49,668 | INFO     | [monitor] cgroup control has ended
[2025-10-13 12:52:09] 2025-10-13 10:51:51,626 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140515025090368)>', '<ExcThread(monitor, started 140514544314112)>']
[2025-10-13 12:52:09] 2025-10-13 10:51:56,652 | INFO     | all workflow threads have been joined
[2025-10-13 12:52:09] 2025-10-13 10:51:56,652 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 12:52:09] 2025-10-13 10:51:56,652 | INFO     | traces error code: 0
[2025-10-13 12:52:09] 2025-10-13 10:51:56,652 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 12:52:09] 2025-10-13 10:52:08,954 | INFO     | PID=3195422 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 12:52:09] 2025-10-13 10:52:08,955 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 12:52:09] 2025-10-13 10:52:08,955 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 12:52:09] 2025-10-13 10:52:08,955 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 12:52:09] 2025-10-13 10:52:08,955 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 12:52:09] 2025-10-13 10:52:08,955 | INFO     | [monitor] control thread has ended
[2025-10-13 12:52:09] 2025-10-13 10:52:09,002 [wrapper] ==== pilot stdout END ====
[2025-10-13 12:52:09] 2025-10-13 10:52:09,005 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 12:52:09] 2025-10-13 10:52:09,007 [wrapper] pilotpid: 3195422
[2025-10-13 12:52:09] 2025-10-13 10:52:09,009 [wrapper] Pilot exit status: 0
[2025-10-13 12:52:09] 2025-10-13 10:52:09,016 [wrapper] pandaids: 6840428577
[2025-10-13 12:52:09] 2025-10-13 10:52:09,032 [wrapper] cleanup supervisor_pilot 3214273 3195423
[2025-10-13 12:52:09] 2025-10-13 10:52:09,035 [wrapper] Test setup, not cleaning
[2025-10-13 12:52:09] 2025-10-13 10:52:09,037 [wrapper] apfmon messages muted
[2025-10-13 12:52:09] 2025-10-13 10:52:09,039 [wrapper] ==== wrapper stdout END ====
[2025-10-13 12:52:09] 2025-10-13 10:52:09,042 [wrapper] ==== wrapper stderr END ====
[2025-10-13 12:52:09]  *** Error codes and diagnostics ***
[2025-10-13 12:52:09]     "exeErrorCode": 0,
[2025-10-13 12:52:09]     "exeErrorDiag": "",
[2025-10-13 12:52:09]     "pilotErrorCode": 0,
[2025-10-13 12:52:09]     "pilotErrorDiag": "",
[2025-10-13 12:52:09]  *** Listing of results directory ***
[2025-10-13 12:52:09] total 416900
[2025-10-13 12:52:09] -rw-r--r-- 1 boinc boinc    557409 Oct 12 18:49 pilot3.tar.gz
[2025-10-13 12:52:09] -rw-r--r-- 1 boinc boinc      5112 Oct 12 18:54 queuedata.json
[2025-10-13 12:52:09] -rwx------ 1 boinc boinc     36292 Oct 12 18:55 runpilot2-wrapper.sh
[2025-10-13 12:52:09] -rw-r--r-- 1 boinc boinc       100 Oct 13 11:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 12:52:09] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 11:26 run_atlas
[2025-10-13 12:52:09] -rw-r--r-- 1 boinc boinc       105 Oct 13 11:26 job.xml
[2025-10-13 12:52:09] -rw-r--r-- 2 boinc boinc 222122452 Oct 13 11:26 EVNT.46676267._004792.pool.root.1
[2025-10-13 12:52:09] -rw-r--r-- 2 boinc boinc    569681 Oct 13 11:26 input.tar.gz
[2025-10-13 12:52:09] -rw-r--r-- 2 boinc boinc     15120 Oct 13 11:26 start_atlas.sh
[2025-10-13 12:52:09] drwxrwx--x 2 boinc boinc      4096 Oct 13 11:26 shared
[2025-10-13 12:52:09] -rw-r--r-- 1 boinc boinc         0 Oct 13 11:26 boinc_setup_complete
[2025-10-13 12:52:09] -rw-r--r-- 1 boinc boinc      6443 Oct 13 11:26 init_data.xml
[2025-10-13 12:52:09] -rw-r--r-- 1 boinc boinc         0 Oct 13 11:26 boinc_lockfile
[2025-10-13 12:52:09] -rw-r--r-- 1 boinc boinc      2550 Oct 13 11:26 pandaJob.out
[2025-10-13 12:52:09] -rw------- 1 boinc boinc    972849 Oct 13 11:26 agis_schedconf.cvmfs.json
[2025-10-13 12:52:09] -rw------- 1 boinc boinc   1560580 Oct 13 11:26 agis_ddmendpoints.agis.ALL.json
[2025-10-13 12:52:09] drwx------ 5 boinc boinc      4096 Oct 13 11:26 pilot3
[2025-10-13 12:52:09] -rw------- 1 boinc boinc 198908411 Oct 13 12:51 HITS.46676269._084179.pool.root.1
[2025-10-13 12:52:09] -rw-r--r-- 1 boinc boinc       529 Oct 13 12:51 boinc_task_state.xml
[2025-10-13 12:52:09] -rw------- 1 boinc boinc      1021 Oct 13 12:51 memory_monitor_summary.json
[2025-10-13 12:52:09] -rw------- 1 boinc boinc    244148 Oct 13 12:51 log.46676269._084179.job.log.tgz.1
[2025-10-13 12:52:09] -rw------- 1 boinc boinc      7774 Oct 13 12:51 heartbeat.json
[2025-10-13 12:52:09] -rw-r--r-- 1 boinc boinc        27 Oct 13 12:51 wrapper_checkpoint.txt
[2025-10-13 12:52:09] -rw-r--r-- 1 boinc boinc      8192 Oct 13 12:51 boinc_mmap_file
[2025-10-13 12:52:09] -rw------- 1 boinc boinc       747 Oct 13 12:52 pilotlog.txt
[2025-10-13 12:52:09] -rw------- 1 boinc boinc        95 Oct 13 12:52 pilot_heartbeat.json
[2025-10-13 12:52:09] -rw------- 1 boinc boinc    745774 Oct 13 12:52 log.46676269._084179.job.log.1
[2025-10-13 12:52:09] -rw------- 1 boinc boinc       357 Oct 13 12:52 output.list
[2025-10-13 12:52:09] -rw-r--r-- 1 boinc boinc       620 Oct 13 12:52 runtime_log
[2025-10-13 12:52:09] -rw------- 1 boinc boinc   1013760 Oct 13 12:52 result.tar.gz
[2025-10-13 12:52:09] -rw-r--r-- 1 boinc boinc      8797 Oct 13 12:52 runtime_log.err
[2025-10-13 12:52:09] -rw------- 1 boinc boinc       662 Oct 13 12:52 QWdLDmGXES8n9Rq4apOajLDm4fhM0noT9bVof3QYDm4TUMDmSKuuVo.diag
[2025-10-13 12:52:09] -rw-r--r-- 1 boinc boinc     10199 Oct 13 12:52 stderr.txt
[2025-10-13 12:52:09] HITS file was successfully produced:
[2025-10-13 12:52:09] -rw------- 1 boinc boinc 198908411 Oct 13 12:51 shared/HITS.pool.root.1
[2025-10-13 12:52:09]  *** Contents of shared directory: ***
[2025-10-13 12:52:09] total 412744
[2025-10-13 12:52:09] -rw-r--r-- 2 boinc boinc 222122452 Oct 13 11:26 ATLAS.root_0
[2025-10-13 12:52:09] -rw-r--r-- 2 boinc boinc    569681 Oct 13 11:26 input.tar.gz
[2025-10-13 12:52:09] -rw-r--r-- 2 boinc boinc     15120 Oct 13 11:26 start_atlas.sh
[2025-10-13 12:52:09] -rw------- 1 boinc boinc 198908411 Oct 13 12:51 HITS.pool.root.1
[2025-10-13 12:52:09] -rw------- 1 boinc boinc   1013760 Oct 13 12:52 result.tar.gz
12:52:10 (3191707): run_atlas exited; CPU time 14603.944940
12:52:10 (3191707): called boinc_finish(0)

</stderr_txt>
]]>

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