Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:07:14 (24854): wrapper (7.7.26015): starting
19:07:14 (24854): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 19:07:14] Arguments: --nthreads 8
[2025-10-12 19:07:14] Threads: 8
[2025-10-12 19:07:14] Checking for CVMFS
[2025-10-12 19:07:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:07:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:07:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:07:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:07:14] 2.11.2.0 23418 12304 105624 151640 2 188 13913561 18432001 1789 130560 0 18298066 99.995 409459 34779 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 19:07:14] CVMFS is ok
[2025-10-12 19:07:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:07:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:07:14] Further information can be found at the LHC@home message board.
[2025-10-12 19:07:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:07:14] Checking for apptainer binary...
[2025-10-12 19:07:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:07:14] Running /usr/bin/apptainer --version
[2025-10-12 19:07:14] apptainer version 1.3.2-1.el7
[2025-10-12 19:07:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:07:15] c-206-24.aglt2.org
[2025-10-12 19:07:15] apptainer works
[2025-10-12 19:07:15] Set ATHENA_PROC_NUMBER=8
[2025-10-12 19:07:15] Set ATHENA_CORE_NUMBER=8
[2025-10-12 19:07:15] Starting ATLAS job with PandaID=6840429395
[2025-10-12 19:07:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:11:48]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:11:48] 2025-10-13 02:11:00,479 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 22:11:48] 2025-10-13 02:11:00,479 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 22:11:48] 2025-10-13 02:11:00,482 | INFO     | fitting pss+swap vs Time
[2025-10-12 22:11:48] 2025-10-13 02:11:00,484 | INFO     | sum of square deviations: 1838657730.0
[2025-10-12 22:11:48] 2025-10-13 02:11:00,486 | INFO     | sum of deviations: 10720433410.0
[2025-10-12 22:11:48] 2025-10-13 02:11:00,486 | INFO     | mean x: 1760315959.0
[2025-10-12 22:11:48] 2025-10-13 02:11:00,486 | INFO     | mean y: 2452869.458563536
[2025-10-12 22:11:48] 2025-10-13 02:11:00,486 | INFO     | -- intersect: -10261202900.242409
[2025-10-12 22:11:48] 2025-10-13 02:11:00,486 | INFO     | intersect: -10261202900.242409
[2025-10-12 22:11:48] 2025-10-13 02:11:00,487 | INFO     | chi2: 1.9897659264029683
[2025-10-12 22:11:48] 2025-10-13 02:11:00,487 | INFO     | sum of square deviations: 1690450300.0
[2025-10-12 22:11:48] 2025-10-13 02:11:00,488 | INFO     | sum of deviations: 22296415610.0
[2025-10-12 22:11:48] 2025-10-13 02:11:00,489 | INFO     | mean x: 1760315806.5
[2025-10-12 22:11:48] 2025-10-13 02:11:00,489 | INFO     | mean y: 2464499.227272727
[2025-10-12 22:11:48] 2025-10-13 02:11:00,489 | INFO     | -- intersect: -23215451358.208076
[2025-10-12 22:11:48] 2025-10-13 02:11:00,489 | INFO     | intersect: -23215451358.208076
[2025-10-12 22:11:48] 2025-10-13 02:11:00,490 | INFO     | chi2: 1.1704793229500179
[2025-10-12 22:11:48] 2025-10-13 02:11:00,490 | INFO     | current chi2=1.1704793229500179 (change=41.175024287104414 %)
[2025-10-12 22:11:48] 2025-10-13 02:11:00,490 | INFO     | sum of square deviations: 1550429070.0
[2025-10-12 22:11:48] 2025-10-13 02:11:00,491 | INFO     | sum of deviations: 21536594303.000004
[2025-10-12 22:11:48] 2025-10-13 02:11:00,491 | INFO     | mean x: 1760315654.0
[2025-10-12 22:11:48] 2025-10-13 02:11:00,491 | INFO     | mean y: 2463672.245614035
[2025-10-12 22:11:48] 2025-10-13 02:11:00,491 | INFO     | -- intersect: -24449608866.24086
[2025-10-12 22:11:48] 2025-10-13 02:11:00,491 | INFO     | intersect: -24449608866.24086
[2025-10-12 22:11:48] 2025-10-13 02:11:00,492 | INFO     | chi2: 1.1711825116910772
[2025-10-12 22:11:48] 2025-10-13 02:11:00,492 | INFO     | current chi2=1.1711825116910772 (change=-0.06007698959491777 %)
[2025-10-12 22:11:48] 2025-10-13 02:11:00,492 | INFO     | right removable region: 170
[2025-10-12 22:11:48] 2025-10-13 02:11:00,492 | INFO     | sum of square deviations: 1690450300.0
[2025-10-12 22:11:48] 2025-10-13 02:11:00,493 | INFO     | sum of deviations: -11293356878.0
[2025-10-12 22:11:48] 2025-10-13 02:11:00,493 | INFO     | mean x: 1760316111.5
[2025-10-12 22:11:48] 2025-10-13 02:11:00,493 | INFO     | mean y: 2475215.9318181816
[2025-10-12 22:11:48] 2025-10-13 02:11:00,493 | INFO     | -- intersect: 11762583197.374834
[2025-10-12 22:11:48] 2025-10-13 02:11:00,493 | INFO     | intersect: 11762583197.374834
[2025-10-12 22:11:48] 2025-10-13 02:11:00,493 | INFO     | chi2: 0.8600462236514295
[2025-10-12 22:11:48] 2025-10-13 02:11:00,494 | INFO     | current chi2=0.8600462236514295 (change=56.77651264205775 %)
[2025-10-12 22:11:48] 2025-10-13 02:11:00,494 | INFO     | sum of square deviations: 1550429070.0
[2025-10-12 22:11:48] 2025-10-13 02:11:00,495 | INFO     | sum of deviations: -10822824411.0
[2025-10-12 22:11:48] 2025-10-13 02:11:00,495 | INFO     | mean x: 1760316264.0
[2025-10-12 22:11:48] 2025-10-13 02:11:00,495 | INFO     | mean y: 2474661.678362573
[2025-10-12 22:11:48] 2025-10-13 02:11:00,495 | INFO     | -- intersect: 12290423979.540108
[2025-10-12 22:11:48] 2025-10-13 02:11:00,495 | INFO     | intersect: 12290423979.540108
[2025-10-12 22:11:48] 2025-10-13 02:11:00,495 | INFO     | chi2: 0.8496046474587492
[2025-10-12 22:11:48] 2025-10-13 02:11:00,495 | INFO     | current chi2=0.8496046474587492 (change=1.2140715121507428 %)
[2025-10-12 22:11:48] 2025-10-13 02:11:00,496 | INFO     | left removable region: 20
[2025-10-12 22:11:48] 2025-10-13 02:11:00,496 | INFO     | sum of square deviations: 1046484737.5
[2025-10-12 22:11:48] 2025-10-13 02:11:00,496 | INFO     | sum of deviations: 2522016604.5
[2025-10-12 22:11:48] 2025-10-13 02:11:00,497 | INFO     | mean x: 1760316233.5
[2025-10-12 22:11:48] 2025-10-13 02:11:00,497 | INFO     | mean y: 2484889.5
[2025-10-12 22:11:48] 2025-10-13 02:11:00,497 | INFO     | -- intersect: -4239857698.9487867
[2025-10-12 22:11:48] 2025-10-13 02:11:00,497 | INFO     | intersect: -4239857698.9487867
[2025-10-12 22:11:48] 2025-10-13 02:11:00,497 | INFO     | chi2: 0.00021565831161711774
[2025-10-12 22:11:48] 2025-10-13 02:11:00,497 | INFO     | -- intersect: -4239857698.9487867
[2025-10-12 22:11:48] 2025-10-13 02:11:00,497 | INFO     | current memory leak: 2.41 B/s (using 150 data points, chi2=0.00)
[2025-10-12 22:11:48] 2025-10-13 02:11:00,498 | INFO     | could have reported an average CPU frequency of 2420 MHz (9 samples)
[2025-10-12 22:11:48] 2025-10-13 02:11:00,498 | INFO     | ..............................
[2025-10-12 22:11:48] 2025-10-13 02:11:00,498 | INFO     | . Timing measurements:
[2025-10-12 22:11:48] 2025-10-13 02:11:00,498 | INFO     | . get job = 0 s
[2025-10-12 22:11:48] 2025-10-13 02:11:00,498 | INFO     | . initial setup = 2 s
[2025-10-12 22:11:48] 2025-10-13 02:11:00,499 | INFO     | . payload setup = 4 s
[2025-10-12 22:11:48] 2025-10-13 02:11:00,499 | INFO     | . stage-in = 0 s
[2025-10-12 22:11:48] 2025-10-13 02:11:00,499 | INFO     | . payload execution = 10985 s
[2025-10-12 22:11:48] 2025-10-13 02:11:00,499 | INFO     | . stage-out = 2 s
[2025-10-12 22:11:48] 2025-10-13 02:11:00,499 | INFO     | . log creation = 0 s
[2025-10-12 22:11:48] 2025-10-13 02:11:00,499 | INFO     | ..............................
[2025-10-12 22:11:48] 2025-10-13 02:11:00,841 | INFO     | 
[2025-10-12 22:11:48] 2025-10-13 02:11:00,842 | INFO     | job summary report
[2025-10-12 22:11:48] 2025-10-13 02:11:00,842 | INFO     | --------------------------------------------------
[2025-10-12 22:11:48] 2025-10-13 02:11:00,842 | INFO     | PanDA job id: 6840429395
[2025-10-12 22:11:48] 2025-10-13 02:11:00,842 | INFO     | task id: 46676269
[2025-10-12 22:11:48] 2025-10-13 02:11:00,842 | INFO     | errors: (none)
[2025-10-12 22:11:48] 2025-10-13 02:11:00,842 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 22:11:48] 2025-10-13 02:11:00,842 | INFO     | pilot state: finished 
[2025-10-12 22:11:48] 2025-10-13 02:11:00,842 | INFO     | transexitcode: 0
[2025-10-12 22:11:48] 2025-10-13 02:11:00,842 | INFO     | exeerrorcode: 0
[2025-10-12 22:11:48] 2025-10-13 02:11:00,843 | INFO     | exeerrordiag: 
[2025-10-12 22:11:48] 2025-10-13 02:11:00,843 | INFO     | exitcode: 0
[2025-10-12 22:11:48] 2025-10-13 02:11:00,843 | INFO     | exitmsg: OK
[2025-10-12 22:11:48] 2025-10-13 02:11:00,843 | INFO     | cpuconsumptiontime: 83723 s
[2025-10-12 22:11:48] 2025-10-13 02:11:00,843 | INFO     | nevents: 400
[2025-10-12 22:11:48] 2025-10-13 02:11:00,843 | INFO     | neventsw: 0
[2025-10-12 22:11:48] 2025-10-13 02:11:00,843 | INFO     | pid: 2980
[2025-10-12 22:11:48] 2025-10-13 02:11:00,843 | INFO     | pgrp: 2980
[2025-10-12 22:11:48] 2025-10-13 02:11:00,843 | INFO     | corecount: 8
[2025-10-12 22:11:48] 2025-10-13 02:11:00,843 | INFO     | event service: False
[2025-10-12 22:11:48] 2025-10-13 02:11:00,844 | INFO     | sizes: {0: 2348856, 1: 2348884, 4: 2349146, 11: 2349174, 10994: 2378331, 10996: 2387329, 10997: 2387513, 11001: 2387771}
[2025-10-12 22:11:48] 2025-10-13 02:11:00,844 | INFO     | --------------------------------------------------
[2025-10-12 22:11:48] 2025-10-13 02:11:00,844 | INFO     | 
[2025-10-12 22:11:48] 2025-10-13 02:11:00,844 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 22:11:48] 2025-10-13 02:11:00,859 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,859 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,860 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,860 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,860 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,860 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,860 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,860 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,860 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,860 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,860 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,861 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,861 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,861 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,861 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,861 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,861 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,861 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:11:48] 2025-10-13 02:11:00,861 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,861 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:11:48] 2025-10-13 02:11:00,862 | INFO     | job 6840429395 has completed (purged errors)
[2025-10-12 22:11:48] 2025-10-13 02:11:00,862 | INFO     | overall cleanup function is called
[2025-10-12 22:11:48] 2025-10-13 02:11:01,868 | INFO     | --- collectZombieJob: --- 10, [2980]
[2025-10-12 22:11:48] 2025-10-13 02:11:01,868 | INFO     | zombie collector waiting for pid 2980
[2025-10-12 22:11:48] 2025-10-13 02:11:01,868 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:11:48] 2025-10-13 02:11:01,868 | INFO     | collected zombie processes
[2025-10-12 22:11:48] 2025-10-13 02:11:01,868 | INFO     | will attempt to kill all subprocesses of pid=2980
[2025-10-12 22:11:48] 2025-10-13 02:11:01,985 | INFO     | process IDs to be killed: [2980] (in reverse order)
[2025-10-12 22:11:48] 2025-10-13 02:11:02,039 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:11:48] 2025-10-13 02:11:02,039 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:11:48] 2025-10-13 02:11:02,042 | INFO     | did not find any defunct processes belonging to 2980
[2025-10-12 22:11:48] 2025-10-13 02:11:02,045 | INFO     | did not find any defunct processes belonging to 2980
[2025-10-12 22:11:48] 2025-10-13 02:11:02,045 | INFO     | ready for new job
[2025-10-12 22:11:48] 2025-10-13 02:11:02,045 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:11:48] 2025-10-13 02:11:02,046 | INFO     | ***************************************
[2025-10-12 22:11:48] 2025-10-13 02:11:02,046 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:11:48] 2025-10-13 02:11:02,047 | INFO     | ***************************************
[2025-10-12 22:11:48] 2025-10-13 02:11:02,047 | INFO     | 
[2025-10-12 22:11:48] 2025-10-13 02:11:02,047 | INFO     | architecture information:
[2025-10-12 22:11:48] 2025-10-13 02:11:02,048 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:11:48] 2025-10-13 02:11:02,057 | INFO     | cat /etc/os-release:
[2025-10-12 22:11:48] NAME="CentOS Linux"
[2025-10-12 22:11:48] VERSION="7 (Core)"
[2025-10-12 22:11:48] ID="centos"
[2025-10-12 22:11:48] ID_LIKE="rhel fedora"
[2025-10-12 22:11:48] VERSION_ID="7"
[2025-10-12 22:11:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:11:48] ANSI_COLOR="0;31"
[2025-10-12 22:11:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:11:48] HOME_URL="https://www.centos.org/"
[2025-10-12 22:11:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:11:48] 
[2025-10-12 22:11:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:11:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:11:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:11:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:11:48] 
[2025-10-12 22:11:48] 2025-10-13 02:11:02,058 | INFO     | ***************************************
[2025-10-12 22:11:48] 2025-10-13 02:11:02,560 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 22:11:48] 2025-10-13 02:11:02,571 | INFO     | sufficient remaining disk space (27883732992 B)
[2025-10-12 22:11:48] 2025-10-13 02:11:02,571 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:11:48] 2025-10-13 02:11:02,571 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:11:48] 2025-10-13 02:11:02,571 | INFO     | update_server=False
[2025-10-12 22:11:48] 2025-10-13 02:11:02,571 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:11:48] 2025-10-13 02:11:02,572 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:11:48] 2025-10-13 02:11:02,572 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:11:48] 2025-10-13 02:11:02,572 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:11:48] 2025-10-13 02:11:02,572 | INFO     | aborting loop
[2025-10-12 22:11:48] 2025-10-13 02:11:02,659 | INFO     | all job control threads have been joined
[2025-10-12 22:11:48] 2025-10-13 02:11:03,560 | INFO     | all data control threads have been joined
[2025-10-12 22:11:48] 2025-10-13 02:11:03,576 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:11:48] 2025-10-13 02:11:03,577 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:11:48] 2025-10-13 02:11:03,577 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:11:48] 2025-10-13 02:11:03,591 | INFO     | all payload control threads have been joined
[2025-10-12 22:11:48] 2025-10-13 02:11:03,664 | INFO     | [job] control thread has finished
[2025-10-12 22:11:48] 2025-10-13 02:11:03,675 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:11:48] 2025-10-13 02:11:03,830 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:11:48] 2025-10-13 02:11:04,178 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:11:48] 2025-10-13 02:11:04,355 | INFO     | [job] validate thread has finished
[2025-10-12 22:11:48] 2025-10-13 02:11:04,370 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:11:48] 2025-10-13 02:11:04,565 | INFO     | [data] control thread has finished
[2025-10-12 22:11:48] 2025-10-13 02:11:04,594 | INFO     | [payload] control thread has finished
[2025-10-12 22:11:48] 2025-10-13 02:11:04,766 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:11:48] 2025-10-13 02:11:04,778 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:11:48] 2025-10-13 02:11:05,028 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:11:48] 2025-10-13 02:11:05,835 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:11:48] 2025-10-13 02:11:06,577 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:11:48] 2025-10-13 02:11:12,961 | INFO     | job.realtimelogging is not enabled
[2025-10-12 22:11:48] 2025-10-13 02:11:13,966 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:11:48] 2025-10-13 02:11:32,119 | INFO     | PID=28910 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 22:11:48] 2025-10-13 02:11:32,119 | INFO     | .. there are 3 such processes running
[2025-10-12 22:11:48] 2025-10-13 02:11:32,120 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:11:48] 2025-10-13 02:11:32,120 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:11:48] 2025-10-13 02:11:32,121 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:11:48] 2025-10-13 02:11:43,485 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:11:48] 2025-10-13 02:11:43,715 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140266199127872)>', '<ExcThread(monitor, started 140265746577152)>']
[2025-10-12 22:11:48] 2025-10-13 02:11:44,180 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:11:48] 2025-10-13 02:11:44,181 | INFO     | [monitor] control thread has ended
[2025-10-12 22:11:48] 2025-10-13 02:11:48,718 | INFO     | all workflow threads have been joined
[2025-10-12 22:11:48] 2025-10-13 02:11:48,718 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:11:48] 2025-10-13 02:11:48,718 | INFO     | traces error code: 0
[2025-10-12 22:11:48] 2025-10-13 02:11:48,719 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:11:48] 2025-10-13 02:11:48,801 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:11:48] 2025-10-13 02:11:48,804 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:11:48] 2025-10-13 02:11:48,806 [wrapper] pilotpid: 28910
[2025-10-12 22:11:48] 2025-10-13 02:11:48,808 [wrapper] Pilot exit status: 0
[2025-10-12 22:11:48] 2025-10-13 02:11:48,817 [wrapper] pandaids: 6840429395
[2025-10-12 22:11:48] 2025-10-13 02:11:48,847 [wrapper] cleanup supervisor_pilot  1971 28911
[2025-10-12 22:11:48] 2025-10-13 02:11:48,850 [wrapper] Test setup, not cleaning
[2025-10-12 22:11:48] 2025-10-13 02:11:48,852 [wrapper] apfmon messages muted
[2025-10-12 22:11:48] 2025-10-13 02:11:48,854 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:11:48] 2025-10-13 02:11:48,856 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:11:48]  *** Error codes and diagnostics ***
[2025-10-12 22:11:48]     "exeErrorCode": 0,
[2025-10-12 22:11:48]     "exeErrorDiag": "",
[2025-10-12 22:11:48]     "pilotErrorCode": 0,
[2025-10-12 22:11:48]     "pilotErrorDiag": "",
[2025-10-12 22:11:48]  *** Listing of results directory ***
[2025-10-12 22:11:48] total 417848
[2025-10-12 22:11:48] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 13:17 pilot3.tar.gz
[2025-10-12 22:11:48] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 13:20 queuedata.json
[2025-10-12 22:11:48] -rwx------ 1 boincer umatlas     36292 Oct 12 13:21 runpilot2-wrapper.sh
[2025-10-12 22:11:48] -rw-r--r-- 1 boincer umatlas       100 Oct 12 19:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:11:48] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 19:07 run_atlas
[2025-10-12 22:11:48] -rw-r--r-- 1 boincer umatlas       105 Oct 12 19:07 job.xml
[2025-10-12 22:11:48] -rw-r--r-- 2 boincer umatlas 221045243 Oct 12 19:07 EVNT.46676267._004814.pool.root.1
[2025-10-12 22:11:48] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 19:07 start_atlas.sh
[2025-10-12 22:11:48] drwxrwx--x 2 boincer umatlas      4096 Oct 12 19:07 shared
[2025-10-12 22:11:48] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 19:07 input.tar.gz
[2025-10-12 22:11:48] -rw-r--r-- 1 boincer umatlas         0 Oct 12 19:07 boinc_lockfile
[2025-10-12 22:11:48] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 19:07 pandaJob.out
[2025-10-12 22:11:48] -rw------- 1 boincer umatlas    975603 Oct 12 19:07 agis_schedconf.cvmfs.json
[2025-10-12 22:11:48] drwx------ 5 boincer umatlas      4096 Oct 12 19:07 pilot3
[2025-10-12 22:11:48] -rw------- 1 boincer umatlas 198989189 Oct 12 22:10 HITS.46676269._084741.pool.root.1
[2025-10-12 22:11:48] -rw-r--r-- 1 boincer umatlas       531 Oct 12 22:10 boinc_task_state.xml
[2025-10-12 22:11:48] -rw------- 1 boincer umatlas      1053 Oct 12 22:10 memory_monitor_summary.json
[2025-10-12 22:11:48] -rw------- 1 boincer umatlas   1560580 Oct 12 22:10 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:11:48] -rw------- 1 boincer umatlas    427874 Oct 12 22:10 log.46676269._084741.job.log.tgz.1
[2025-10-12 22:11:48] -rw-r--r-- 1 boincer umatlas      5951 Oct 12 22:10 init_data.xml
[2025-10-12 22:11:48] -rw------- 1 boincer umatlas      7857 Oct 12 22:11 heartbeat.json
[2025-10-12 22:11:48] -rw------- 1 boincer umatlas        95 Oct 12 22:11 pilot_heartbeat.json
[2025-10-12 22:11:48] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 22:11 boinc_mmap_file
[2025-10-12 22:11:48] -rw-r--r-- 1 boincer umatlas        28 Oct 12 22:11 wrapper_checkpoint.txt
[2025-10-12 22:11:48] -rw------- 1 boincer umatlas      4893 Oct 12 22:11 pilotlog.txt
[2025-10-12 22:11:48] -rw------- 1 boincer umatlas   1541910 Oct 12 22:11 log.46676269._084741.job.log.1
[2025-10-12 22:11:48] -rw------- 1 boincer umatlas       357 Oct 12 22:11 output.list
[2025-10-12 22:11:48] -rw-r--r-- 1 boincer umatlas       620 Oct 12 22:11 runtime_log
[2025-10-12 22:11:48] -rw------- 1 boincer umatlas   1986560 Oct 12 22:11 result.tar.gz
[2025-10-12 22:11:48] -rw-r--r-- 1 boincer umatlas      8704 Oct 12 22:11 runtime_log.err
[2025-10-12 22:11:48] -rw------- 1 boincer umatlas       661 Oct 12 22:11 JwWLDmLwES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmRskNDm3ePkUn.diag
[2025-10-12 22:11:48] -rw-r--r-- 1 boincer umatlas     20853 Oct 12 22:11 stderr.txt
[2025-10-12 22:11:48] HITS file was successfully produced:
[2025-10-12 22:11:48] -rw------- 1 boincer umatlas 198989189 Oct 12 22:10 shared/HITS.pool.root.1
[2025-10-12 22:11:48]  *** Contents of shared directory: ***
[2025-10-12 22:11:48] total 412716
[2025-10-12 22:11:48] -rw-r--r-- 2 boincer umatlas 221045243 Oct 12 19:07 ATLAS.root_0
[2025-10-12 22:11:48] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 19:07 start_atlas.sh
[2025-10-12 22:11:48] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 19:07 input.tar.gz
[2025-10-12 22:11:48] -rw------- 1 boincer umatlas 198989189 Oct 12 22:10 HITS.pool.root.1
[2025-10-12 22:11:48] -rw------- 1 boincer umatlas   1986560 Oct 12 22:11 result.tar.gz
22:11:50 (24854): run_atlas exited; CPU time 83862.434228
22:11:50 (24854): called boinc_finish(0)

</stderr_txt>
]]>

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