Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 10:01:21 (22832): vboxwrapper version 26210
2025-10-13 10:01:21 (22832): BOINC client version: 8.2.4
2025-10-13 10:01:21 (22832): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-10-13 10:01:21 (22832): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 10:01:22 (22832): Create VM. (boinc_d652d4a7c0c21d45, slot#6)
2025-10-13 10:01:22 (22832): Setting Memory Size for VM. (4200MB)
2025-10-13 10:01:22 (22832): Setting CPU Count for VM. (2)
2025-10-13 10:01:23 (22832): Setting Chipset Options for VM.
2025-10-13 10:01:23 (22832): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 10:01:23 (22832): Setting Boot Options for VM.
2025-10-13 10:01:24 (22832): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 10:01:24 (22832): Enabling VM Network Access.
2025-10-13 10:01:24 (22832): Disabling USB Support for VM.
2025-10-13 10:01:24 (22832): Disabling COM Port Support for VM.
2025-10-13 10:01:25 (22832): Disabling LPT Port Support for VM.
2025-10-13 10:01:25 (22832): Disabling Audio Support for VM.
2025-10-13 10:01:25 (22832): Disabling Clipboard Support for VM.
2025-10-13 10:01:25 (22832): Disabling Drag and Drop Support for VM.
2025-10-13 10:01:26 (22832): Adding storage controller(s) to VM.
2025-10-13 10:01:26 (22832): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 10:01:26 (22832): Adding VirtualBox Guest Additions to VM.
2025-10-13 10:01:27 (22832): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 10:01:27 (22832): forwarding host port 60199 to guest port 80
2025-10-13 10:01:27 (22832): Enabling remote desktop for VM.
2025-10-13 10:01:28 (22832): Required extension pack not installed, remote desktop not enabled.
2025-10-13 10:01:28 (22832): Enabling shared directory for VM.
2025-10-13 10:01:28 (22832): Starting VM using VBoxManage interface. (boinc_d652d4a7c0c21d45, slot#6)
2025-10-13 10:01:35 (22832): Successfully started VM. (PID = '24032')
2025-10-13 10:01:35 (22832): Reporting VM Process ID to BOINC.
2025-10-13 10:01:35 (22832): Guest Log: BIOS: VirtualBox 7.0.6
2025-10-13 10:01:35 (22832): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 10:01:35 (22832): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 10:01:35 (22832): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 10:01:35 (22832): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 10:01:35 (22832): Detected: Web Application Enabled (http://localhost:60199)
2025-10-13 10:01:35 (22832): Preference change detected
2025-10-13 10:01:35 (22832): Setting CPU throttle for VM. (100%)
2025-10-13 10:01:35 (22832): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 10:01:37 (22832): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 10:01:37 (22832): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 10:01:40 (22832): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 10:01:40 (22832): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 10:01:40 (22832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 10:01:45 (22832): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 10:01:45 (22832): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-13 10:01:51 (22832): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 10:01:51 (22832): Guest Log: 00:00:00.000107 main     Log opened 2025-10-13T10:01:50.194566000Z
2025-10-13 10:01:51 (22832): Guest Log: 00:00:00.000197 main     OS Product: Linux
2025-10-13 10:01:51 (22832): Guest Log: 00:00:00.000245 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 10:01:51 (22832): Guest Log: 00:00:00.000275 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 10:01:51 (22832): Guest Log: 00:00:00.000300 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 10:01:51 (22832): Guest Log: 00:00:00.000301 main     Process ID: 1263
2025-10-13 10:01:51 (22832): Guest Log: 00:00:00.000302 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 10:01:51 (22832): Guest Log: 00:00:00.000991 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 10:01:51 (22832): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 10:01:51 (22832): Guest Log: [INFO] Mounting shared directory
2025-10-13 10:01:51 (22832): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 10:02:02 (22832): Guest Log: 00:00:11.034589 timesync vgsvcTimeSyncWorker: Radical guest time change: -39 588 216 468 000ns (GuestNow=1 760 310 121 981 140 000 ns GuestLast=1 760 349 710 197 608 000 ns fSetTimeLastLoop=true )
2025-10-13 10:02:28 (22832): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 10:02:28 (22832): Guest Log: [INFO] Detected branch: prod
2025-10-13 10:02:29 (22832): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 10:02:29 (22832): Guest Log: Copying input files
2025-10-13 10:02:30 (22832): Guest Log: Copied input files into RunAtlas.
2025-10-13 10:02:30 (22832): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-13 10:02:30 (22832): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-13 10:02:30 (22832): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-13 10:02:30 (22832): Guest Log: Further information can be found at the LHC@home message board.
2025-10-13 10:02:41 (22832): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 10:02:42 (22832): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 10:02:42 (22832): Guest Log: 2.6.3.0 1559 0 32168 151640 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-13 10:02:42 (22832): Guest Log: copied the webapp to /var/www
2025-10-13 10:02:42 (22832): Guest Log: ATHENA_PROC_NUMBER=2
2025-10-13 10:02:42 (22832): Guest Log: ATHENA_CORE_NUMBER=2
2025-10-13 10:02:43 (22832): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 10:02:43 (22832): Guest Log:  *** Starting ATLAS job. (PandaID=6840750508 taskID=46676269) ***
2025-10-13 11:41:37 (22832): Status Report: Elapsed Time: '6000.000000'
2025-10-13 11:41:37 (22832): Status Report: CPU Time: '10505.250000'
2025-10-13 13:21:39 (22832): Status Report: Elapsed Time: '12000.000000'
2025-10-13 13:21:39 (22832): Status Report: CPU Time: '22427.609375'
2025-10-13 15:01:40 (22832): Status Report: Elapsed Time: '18000.000000'
2025-10-13 15:01:40 (22832): Status Report: CPU Time: '34346.796875'
2025-10-13 16:41:42 (22832): Status Report: Elapsed Time: '24000.000000'
2025-10-13 16:41:42 (22832): Status Report: CPU Time: '46282.796875'
2025-10-13 17:26:14 (22832): Guest Log:  *** Job finished ***
2025-10-13 17:26:14 (22832): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:25:55,923 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:25:55,923 | INFO     | traces error code: 0
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:25:55,923 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:26:02,824 | INFO     | PID=5928 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:26:02,825 | INFO     | found 0 job(s) in 20 queues
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:26:02,825 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:26:02,825 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:26:02,825 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:26:02,825 | CRITICAL | thread 'MainThread' is not alive
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:26:02,825 | INFO     | [monitor] control thread has ended
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:26:02,939 [wrapper] ==== pilot stdout END ====
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:26:02,943 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:26:02,947 [wrapper] pilotpid: 5928
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:26:02,952 [wrapper] Pilot exit status: 0
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:26:03,404 [wrapper] pandaids: 6840750508
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:26:03,432 [wrapper] cleanup supervisor_pilot 28227 5929
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:26:03,436 [wrapper] Test setup, not cleaning
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:26:03,440 [wrapper] apfmon messages muted
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:26:03,445 [wrapper] ==== wrapper stdout END ====
2025-10-13 17:26:14 (22832): Guest Log: 2025-10-13 06:26:03,449 [wrapper] ==== wrapper stderr END ====
2025-10-13 17:26:14 (22832): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 17:26:14 (22832): Guest Log:     "exeErrorCode": 0,
2025-10-13 17:26:14 (22832): Guest Log:     "exeErrorDiag": "",
2025-10-13 17:26:14 (22832): Guest Log:     "pilotErrorCode": 0,
2025-10-13 17:26:14 (22832): Guest Log:     "pilotErrorDiag": "",
2025-10-13 17:26:14 (22832): Guest Log:  *** Listing of results directory ***
2025-10-13 17:26:14 (22832): Guest Log: total 202436
2025-10-13 17:26:14 (22832): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 21:12 pilot3.tar.gz
2025-10-13 17:26:14 (22832): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 21:23 queuedata.json
2025-10-13 17:26:14 (22832): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 21:24 runpilot2-wrapper.sh
2025-10-13 17:26:14 (22832): Guest Log: -rwxr-xr-x. 1 atlas atlas      8499 Oct 12 23:02 init_data.xml
2025-10-13 17:26:14 (22832): Guest Log: -rwxr-xr-x. 1 atlas atlas    569681 Oct 12 23:02 input.tar.gz
2025-10-13 17:26:14 (22832): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 12 23:02 start_atlas.sh
2025-10-13 17:26:14 (22832): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 23:02 EVNT.46676267._004828.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 17:26:14 (22832): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 12 23:02 pandaJob.out
2025-10-13 17:26:14 (22832): Guest Log: -rw-------. 1 atlas atlas    975603 Oct 12 23:04 agis_schedconf.cvmfs.json
2025-10-13 17:26:14 (22832): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 23:05 pilot3
2025-10-13 17:26:14 (22832): Guest Log: -rw-------. 1 atlas atlas 195152977 Oct 13 06:24 HITS.46676269._089880.pool.root.1
2025-10-13 17:26:14 (22832): Guest Log: -rw-------. 1 atlas atlas      1020 Oct 13 06:25 memory_monitor_summary.json
2025-10-13 17:26:14 (22832): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 06:25 agis_ddmendpoints.agis.ALL.json
2025-10-13 17:26:14 (22832): Guest Log: -rw-------. 1 atlas atlas    529365 Oct 13 06:25 log.46676269._089880.job.log.tgz.1
2025-10-13 17:26:14 (22832): Guest Log: -rw-------. 1 atlas atlas      7786 Oct 13 06:25 heartbeat.json
2025-10-13 17:26:14 (22832): Guest Log: -rw-------. 1 atlas atlas        95 Oct 13 06:26 pilot_heartbeat.json
2025-10-13 17:26:14 (22832): Guest Log: -rw-------. 1 atlas atlas       814 Oct 13 06:26 pilotlog.txt
2025-10-13 17:26:14 (22832): Guest Log: -rw-------. 1 atlas atlas   3624889 Oct 13 06:26 log.46676269._089880.job.log.1
2025-10-13 17:26:14 (22832): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 06:26 output.list
2025-10-13 17:26:14 (22832): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 06:26 runtime_log
2025-10-13 17:26:14 (22832): Guest Log: -rw-------. 1 atlas atlas   4177920 Oct 13 06:26 result.tar.gz
2025-10-13 17:26:14 (22832): Guest Log: -rw-------. 1 atlas atlas       666 Oct 13 06:26 TwYNDmfjIS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxelNDmDEdvYn.diag
2025-10-13 17:26:14 (22832): Guest Log: -rw-r--r--. 1 atlas atlas      8664 Oct 13 06:26 runtime_log.err
2025-10-13 17:26:14 (22832): Guest Log: Looking for outputfile HITS.46676269._089880.pool.root.1
2025-10-13 17:26:14 (22832): Guest Log: HITS file was successfully produced
2025-10-13 17:26:14 (22832): Guest Log: -rw-------. 1 atlas atlas 195152977 Oct 13 06:24 /home/atlas/RunAtlas/HITS.46676269._089880.pool.root.1
2025-10-13 17:26:15 (22832): Guest Log: Successfully finished the ATLAS job!
2025-10-13 17:26:15 (22832): Guest Log: Copying the results back to the shared directory!
2025-10-13 17:26:16 (22832): Guest Log:  *** Contents of shared directory: ***
2025-10-13 17:26:16 (22832): Guest Log: total 413980
2025-10-13 17:26:16 (22832): Guest Log: -rwxrwxrwx. 1 root root 223978105 Oct 12 23:01 ATLAS.root_0
2025-10-13 17:26:16 (22832): Guest Log: -rwxrwxrwx. 1 root root 195152977 Oct 13  2025 HITS.pool.root.1
2025-10-13 17:26:16 (22832): Guest Log: -rwxrwxrwx. 1 root root      8499 Oct 12 23:01 init_data.xml
2025-10-13 17:26:16 (22832): Guest Log: -rwxrwxrwx. 1 root root    569681 Oct 12 23:00 input.tar.gz
2025-10-13 17:26:16 (22832): Guest Log: -rwxrwxrwx. 1 root root   4177920 Oct 13  2025 result.tar.gz
2025-10-13 17:26:16 (22832): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 23:00 start_atlas.sh
2025-10-13 17:26:16 (22832): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 17:26:16 (22832): VM Completion File Detected.
2025-10-13 17:26:16 (22832): Powering off VM.
2025-10-13 17:26:17 (22832): Successfully stopped VM.
2025-10-13 17:26:17 (22832): Deregistering VM. (boinc_d652d4a7c0c21d45, slot#6)
2025-10-13 17:26:17 (22832): Removing network bandwidth throttle group from VM.
2025-10-13 17:26:17 (22832): Removing VM from VirtualBox.
2025-10-13 17:26:22 (22832): called boinc_finish(0)

</stderr_txt>
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