Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:21:23 (584965): wrapper (7.7.26015): starting
19:21:23 (584965): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 19:21:23] Arguments: --nthreads 8
[2025-10-12 19:21:23] Threads: 8
[2025-10-12 19:21:23] Checking for CVMFS
[2025-10-12 19:21:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:21:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:21:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:21:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:21:24] 2.13.2.0 891182 138741 556624 151640 2 985 21844673 32935936 48503 16776704 0 483757077 99.678 404764679 16823 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 19:21:24] CVMFS is ok
[2025-10-12 19:21:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:21:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:21:24] Further information can be found at the LHC@home message board.
[2025-10-12 19:21:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:21:24] Checking for apptainer binary...
[2025-10-12 19:21:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:21:24] Running /usr/bin/apptainer --version
[2025-10-12 19:21:24] apptainer version 1.4.3-1.el9
[2025-10-12 19:21:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:21:25] c7-3-29.aglt2.org
[2025-10-12 19:21:25] apptainer works
[2025-10-12 19:21:25] Set ATHENA_PROC_NUMBER=8
[2025-10-12 19:21:25] Set ATHENA_CORE_NUMBER=8
[2025-10-12 19:21:25] Starting ATLAS job with PandaID=6840711707
[2025-10-12 19:21:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:44:22]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:44:22] 2025-10-13 03:43:38,731 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:44:22] 2025-10-13 03:43:40,274 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 23:44:22] 2025-10-13 03:43:40,284 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3149.3361041666662
[2025-10-12 23:44:22] 2025-10-13 03:43:40,410 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6840711707/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:44:22] 2025-10-13 03:43:40,411 | INFO     | extracted standard info from prmon json
[2025-10-12 23:44:22] 2025-10-13 03:43:40,411 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:44:22] 2025-10-13 03:43:40,412 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:44:22] 2025-10-13 03:43:40,412 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:44:22] 2025-10-13 03:43:40,412 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:44:22] 2025-10-13 03:43:40,416 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:44:22] 2025-10-13 03:43:40,416 | INFO     | sum of square deviations: 5081136793.688939
[2025-10-12 23:44:22] 2025-10-13 03:43:40,418 | INFO     | sum of deviations: 8896910840.614164
[2025-10-12 23:44:22] 2025-10-13 03:43:40,418 | INFO     | mean x: 1760319213.8858268
[2025-10-12 23:44:22] 2025-10-13 03:43:40,418 | INFO     | mean y: 2263205.503937008
[2025-10-12 23:44:22] 2025-10-13 03:43:40,418 | INFO     | -- intersect: -3080000416.371894
[2025-10-12 23:44:22] 2025-10-13 03:43:40,418 | INFO     | intersect: -3080000416.371894
[2025-10-12 23:44:22] 2025-10-13 03:43:40,419 | INFO     | chi2: 2.3239370447127143
[2025-10-12 23:44:22] 2025-10-13 03:43:40,419 | INFO     | sum of square deviations: 4786940899.212866
[2025-10-12 23:44:22] 2025-10-13 03:43:40,421 | INFO     | sum of deviations: 8185293917.863455
[2025-10-12 23:44:22] 2025-10-13 03:43:40,421 | INFO     | mean x: 1760319061.3895583
[2025-10-12 23:44:22] 2025-10-13 03:43:40,421 | INFO     | mean y: 2262847.485943775
[2025-10-12 23:44:22] 2025-10-13 03:43:40,421 | INFO     | -- intersect: -3007744840.108515
[2025-10-12 23:44:22] 2025-10-13 03:43:40,421 | INFO     | intersect: -3007744840.108515
[2025-10-12 23:44:22] 2025-10-13 03:43:40,421 | INFO     | chi2: 2.317502487996229
[2025-10-12 23:44:22] 2025-10-13 03:43:40,422 | INFO     | current chi2=2.317502487996229 (change=0.27688171377640947 %)
[2025-10-12 23:44:22] 2025-10-13 03:43:40,422 | INFO     | right removable region: 248
[2025-10-12 23:44:22] 2025-10-13 03:43:40,422 | INFO     | sum of square deviations: 4786896735.4297
[2025-10-12 23:44:22] 2025-10-13 03:43:40,423 | INFO     | sum of deviations: -39748636015.85541
[2025-10-12 23:44:22] 2025-10-13 03:43:40,423 | INFO     | mean x: 1760319366.3935742
[2025-10-12 23:44:22] 2025-10-13 03:43:40,424 | INFO     | mean y: 2288263.5903614457
[2025-10-12 23:44:22] 2025-10-13 03:43:40,424 | INFO     | -- intersect: 14619335096.575459
[2025-10-12 23:44:22] 2025-10-13 03:43:40,424 | INFO     | intersect: 14619335096.575459
[2025-10-12 23:44:22] 2025-10-13 03:43:40,424 | INFO     | chi2: 0.16685644521372808
[2025-10-12 23:44:22] 2025-10-13 03:43:40,424 | INFO     | current chi2=0.16685644521372808 (change=92.82009615564458 %)
[2025-10-12 23:44:22] 2025-10-13 03:43:40,424 | INFO     | sum of square deviations: 4504283490.012297
[2025-10-12 23:44:22] 2025-10-13 03:43:40,426 | INFO     | sum of deviations: -41973623847.028725
[2025-10-12 23:44:22] 2025-10-13 03:43:40,426 | INFO     | mean x: 1760319518.8893442
[2025-10-12 23:44:22] 2025-10-13 03:43:40,426 | INFO     | mean y: 2289446.2581967213
[2025-10-12 23:44:22] 2025-10-13 03:43:40,426 | INFO     | -- intersect: 16406005930.862099
[2025-10-12 23:44:22] 2025-10-13 03:43:40,426 | INFO     | intersect: 16406005930.862099
[2025-10-12 23:44:22] 2025-10-13 03:43:40,426 | INFO     | chi2: 0.14234956326846274
[2025-10-12 23:44:22] 2025-10-13 03:43:40,427 | INFO     | current chi2=0.14234956326846274 (change=14.687405040826704 %)
[2025-10-12 23:44:22] 2025-10-13 03:43:40,427 | INFO     | left removable region: 20
[2025-10-12 23:44:22] 2025-10-13 03:43:40,427 | INFO     | sum of square deviations: 3674983667.473668
[2025-10-12 23:44:22] 2025-10-13 03:43:40,429 | INFO     | sum of deviations: -33578213469.631577
[2025-10-12 23:44:22] 2025-10-13 03:43:40,429 | INFO     | mean x: 1760319640.8947368
[2025-10-12 23:44:22] 2025-10-13 03:43:40,429 | INFO     | mean y: 2284852.1403508773
[2025-10-12 23:44:22] 2025-10-13 03:43:40,429 | INFO     | -- intersect: 16086271619.184177
[2025-10-12 23:44:22] 2025-10-13 03:43:40,429 | INFO     | intersect: 16086271619.184177
[2025-10-12 23:44:22] 2025-10-13 03:43:40,430 | INFO     | chi2: 0.12737156397041244
[2025-10-12 23:44:22] 2025-10-13 03:43:40,430 | INFO     | -- intersect: 16086271619.184177
[2025-10-12 23:44:22] 2025-10-13 03:43:40,430 | INFO     | current memory leak: -9.14 B/s (using 228 data points, chi2=0.13)
[2025-10-12 23:44:22] 2025-10-13 03:43:40,430 | INFO     | could have reported an average CPU frequency of 3227 MHz (12 samples)
[2025-10-12 23:44:22] 2025-10-13 03:43:40,431 | INFO     | ..............................
[2025-10-12 23:44:22] 2025-10-13 03:43:40,431 | INFO     | . Timing measurements:
[2025-10-12 23:44:22] 2025-10-13 03:43:40,431 | INFO     | . get job = 0 s
[2025-10-12 23:44:22] 2025-10-13 03:43:40,431 | INFO     | . initial setup = 9 s
[2025-10-12 23:44:22] 2025-10-13 03:43:40,431 | INFO     | . payload setup = 43 s
[2025-10-12 23:44:22] 2025-10-13 03:43:40,431 | INFO     | . stage-in = 0 s
[2025-10-12 23:44:22] 2025-10-13 03:43:40,431 | INFO     | . payload execution = 15506 s
[2025-10-12 23:44:22] 2025-10-13 03:43:40,431 | INFO     | . stage-out = 5 s
[2025-10-12 23:44:22] 2025-10-13 03:43:40,431 | INFO     | . log creation = 0 s
[2025-10-12 23:44:22] 2025-10-13 03:43:40,431 | INFO     | ..............................
[2025-10-12 23:44:22] 2025-10-13 03:43:40,578 | INFO     | 
[2025-10-12 23:44:22] 2025-10-13 03:43:40,578 | INFO     | job summary report
[2025-10-12 23:44:22] 2025-10-13 03:43:40,578 | INFO     | --------------------------------------------------
[2025-10-12 23:44:22] 2025-10-13 03:43:40,578 | INFO     | PanDA job id: 6840711707
[2025-10-12 23:44:22] 2025-10-13 03:43:40,578 | INFO     | task id: 46676269
[2025-10-12 23:44:22] 2025-10-13 03:43:40,578 | INFO     | errors: (none)
[2025-10-12 23:44:22] 2025-10-13 03:43:40,578 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:44:22] 2025-10-13 03:43:40,578 | INFO     | pilot state: finished 
[2025-10-12 23:44:22] 2025-10-13 03:43:40,578 | INFO     | transexitcode: 0
[2025-10-12 23:44:22] 2025-10-13 03:43:40,578 | INFO     | exeerrorcode: 0
[2025-10-12 23:44:22] 2025-10-13 03:43:40,578 | INFO     | exeerrordiag: 
[2025-10-12 23:44:22] 2025-10-13 03:43:40,579 | INFO     | exitcode: 0
[2025-10-12 23:44:22] 2025-10-13 03:43:40,579 | INFO     | exitmsg: OK
[2025-10-12 23:44:22] 2025-10-13 03:43:40,579 | INFO     | cpuconsumptiontime: 33118 s
[2025-10-12 23:44:22] 2025-10-13 03:43:40,579 | INFO     | nevents: 400
[2025-10-12 23:44:22] 2025-10-13 03:43:40,579 | INFO     | neventsw: 0
[2025-10-12 23:44:22] 2025-10-13 03:43:40,579 | INFO     | pid: 600437
[2025-10-12 23:44:22] 2025-10-13 03:43:40,579 | INFO     | pgrp: 600437
[2025-10-12 23:44:22] 2025-10-13 03:43:40,579 | INFO     | corecount: 8
[2025-10-12 23:44:22] 2025-10-13 03:43:40,579 | INFO     | event service: False
[2025-10-12 23:44:22] 2025-10-13 03:43:40,579 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 23: 2348913, 29: 2349203, 34: 2349231, 15554: 2380181, 15560: 2389179, 15562: 2389235, 15591: 2389429}
[2025-10-12 23:44:22] 2025-10-13 03:43:40,579 | INFO     | --------------------------------------------------
[2025-10-12 23:44:22] 2025-10-13 03:43:40,579 | INFO     | 
[2025-10-12 23:44:22] 2025-10-13 03:43:40,579 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-12 23:44:22] 2025-10-13 03:43:40,799 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,799 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,800 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,800 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,800 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,800 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,800 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,800 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,800 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,800 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,800 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,800 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,800 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,800 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,800 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,800 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,801 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,801 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:44:22] 2025-10-13 03:43:40,801 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,801 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:44:22] 2025-10-13 03:43:40,801 | INFO     | job 6840711707 has completed (purged errors)
[2025-10-12 23:44:22] 2025-10-13 03:43:40,801 | INFO     | overall cleanup function is called
[2025-10-12 23:44:22] 2025-10-13 03:43:41,712 | INFO     | PID=589790 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 23:44:22] 2025-10-13 03:43:41,712 | INFO     | .. there are 60 such processes running
[2025-10-12 23:44:22] 2025-10-13 03:43:41,912 | INFO     | --- collectZombieJob: --- 10, [600437]
[2025-10-12 23:44:22] 2025-10-13 03:43:41,913 | INFO     | zombie collector waiting for pid 600437
[2025-10-12 23:44:22] 2025-10-13 03:43:41,913 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:44:22] 2025-10-13 03:43:41,913 | INFO     | collected zombie processes
[2025-10-12 23:44:22] 2025-10-13 03:43:41,913 | INFO     | will attempt to kill all subprocesses of pid=600437
[2025-10-12 23:44:22] 2025-10-13 03:43:43,089 | INFO     | process IDs to be killed: [600437] (in reverse order)
[2025-10-12 23:44:22] 2025-10-13 03:43:43,942 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:44:22] 2025-10-13 03:43:43,942 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:44:22] 2025-10-13 03:43:44,001 | INFO     | did not find any defunct processes belonging to 600437
[2025-10-12 23:44:22] 2025-10-13 03:43:44,028 | INFO     | did not find any defunct processes belonging to 600437
[2025-10-12 23:44:22] 2025-10-13 03:43:44,029 | INFO     | ready for new job
[2025-10-12 23:44:22] 2025-10-13 03:43:44,029 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:44:22] 2025-10-13 03:43:44,031 | INFO     | ***************************************
[2025-10-12 23:44:22] 2025-10-13 03:43:44,031 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:44:22] 2025-10-13 03:43:44,031 | INFO     | ***************************************
[2025-10-12 23:44:22] 2025-10-13 03:43:44,031 | INFO     | 
[2025-10-12 23:44:22] 2025-10-13 03:43:44,057 | INFO     | architecture information:
[2025-10-12 23:44:22] 2025-10-13 03:43:44,068 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:44:22] 2025-10-13 03:43:44,151 | INFO     | cat /etc/os-release:
[2025-10-12 23:44:22] NAME="CentOS Linux"
[2025-10-12 23:44:22] VERSION="7 (Core)"
[2025-10-12 23:44:22] ID="centos"
[2025-10-12 23:44:22] ID_LIKE="rhel fedora"
[2025-10-12 23:44:22] VERSION_ID="7"
[2025-10-12 23:44:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:44:22] ANSI_COLOR="0;31"
[2025-10-12 23:44:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:44:22] HOME_URL="https://www.centos.org/"
[2025-10-12 23:44:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:44:22] 
[2025-10-12 23:44:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:44:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:44:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:44:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:44:22] 
[2025-10-12 23:44:22] 2025-10-13 03:43:44,151 | INFO     | ***************************************
[2025-10-12 23:44:22] 2025-10-13 03:43:44,655 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-12 23:44:22] 2025-10-13 03:43:44,807 | INFO     | sufficient remaining disk space (73593257984 B)
[2025-10-12 23:44:22] 2025-10-13 03:43:44,808 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:44:22] 2025-10-13 03:43:44,808 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:44:22] 2025-10-13 03:43:44,808 | INFO     | update_server=False
[2025-10-12 23:44:22] 2025-10-13 03:43:44,808 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:44:22] 2025-10-13 03:43:44,808 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:44:22] 2025-10-13 03:43:44,809 | INFO     | aborting loop
[2025-10-12 23:44:22] 2025-10-13 03:43:45,145 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:44:22] 2025-10-13 03:43:45,307 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:44:22] 2025-10-13 03:43:45,421 | INFO     | all payload control threads have been joined
[2025-10-12 23:44:22] 2025-10-13 03:43:45,531 | INFO     | all data control threads have been joined
[2025-10-12 23:44:22] 2025-10-13 03:43:45,620 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:44:22] 2025-10-13 03:43:45,814 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:44:22] 2025-10-13 03:43:45,815 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:44:22] 2025-10-13 03:43:45,843 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:44:22] 2025-10-13 03:43:45,919 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:44:22] 2025-10-13 03:43:46,275 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:44:22] 2025-10-13 03:43:46,421 | INFO     | all job control threads have been joined
[2025-10-12 23:44:22] 2025-10-13 03:43:46,429 | INFO     | [payload] control thread has finished
[2025-10-12 23:44:22] 2025-10-13 03:43:46,536 | INFO     | [data] control thread has finished
[2025-10-12 23:44:22] 2025-10-13 03:43:46,598 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:44:22] 2025-10-13 03:43:46,627 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:44:22] 2025-10-13 03:43:46,850 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:44:22] 2025-10-13 03:43:46,870 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:44:22] 2025-10-13 03:43:47,229 | INFO     | [job] validate thread has finished
[2025-10-12 23:44:22] 2025-10-13 03:43:47,301 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:44:22] 2025-10-13 03:43:47,314 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:44:22] 2025-10-13 03:43:47,427 | INFO     | [job] control thread has finished
[2025-10-12 23:44:22] 2025-10-13 03:43:49,154 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:44:22] 2025-10-13 03:44:13,777 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:44:22] 2025-10-13 03:44:15,219 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140011158734656)>', '<ExcThread(monitor, started 140010363811584)>']
[2025-10-12 23:44:22] 2025-10-13 03:44:15,956 | INFO     | PID=589790 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 23:44:22] 2025-10-13 03:44:15,956 | INFO     | .. there are 60 such processes running
[2025-10-12 23:44:22] 2025-10-13 03:44:15,957 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:44:22] 2025-10-13 03:44:15,957 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:44:22] 2025-10-13 03:44:15,957 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:44:22] 2025-10-13 03:44:15,957 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:44:22] 2025-10-13 03:44:15,957 | INFO     | [monitor] control thread has ended
[2025-10-12 23:44:22] 2025-10-13 03:44:20,245 | INFO     | all workflow threads have been joined
[2025-10-12 23:44:22] 2025-10-13 03:44:20,245 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:44:22] 2025-10-13 03:44:20,245 | INFO     | traces error code: 0
[2025-10-12 23:44:22] 2025-10-13 03:44:20,245 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:44:22] 2025-10-13 03:44:20,614 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:44:22] 2025-10-13 03:44:20,672 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:44:22] 2025-10-13 03:44:20,733 [wrapper] pilotpid: 589790
[2025-10-12 23:44:22] 2025-10-13 03:44:20,763 [wrapper] Pilot exit status: 0
[2025-10-12 23:44:22] 2025-10-13 03:44:20,879 [wrapper] pandaids: 6840711707
[2025-10-12 23:44:22] 2025-10-13 03:44:21,337 [wrapper] cleanup supervisor_pilot 1868142 589791
[2025-10-12 23:44:22] 2025-10-13 03:44:21,354 [wrapper] Test setup, not cleaning
[2025-10-12 23:44:22] 2025-10-13 03:44:21,462 [wrapper] apfmon messages muted
[2025-10-12 23:44:22] 2025-10-13 03:44:21,466 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:44:22] 2025-10-13 03:44:21,496 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:44:22]  *** Error codes and diagnostics ***
[2025-10-12 23:44:22]     "exeErrorCode": 0,
[2025-10-12 23:44:22]     "exeErrorDiag": "",
[2025-10-12 23:44:22]     "pilotErrorCode": 0,
[2025-10-12 23:44:22]     "pilotErrorDiag": "",
[2025-10-12 23:44:22]  *** Listing of results directory ***
[2025-10-12 23:44:22] total 412008
[2025-10-12 23:44:22] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 14:53 pilot3.tar.gz
[2025-10-12 23:44:22] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 15:15 queuedata.json
[2025-10-12 23:44:22] -rwx------. 1 boincer umatlas     36292 Oct 12 15:16 runpilot2-wrapper.sh
[2025-10-12 23:44:22] -rw-r--r--. 1 boincer umatlas       100 Oct 12 19:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:44:22] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 19:21 run_atlas
[2025-10-12 23:44:22] -rw-r--r--. 1 boincer umatlas       105 Oct 12 19:21 job.xml
[2025-10-12 23:44:22] -rw-r--r--. 2 boincer umatlas 222382289 Oct 12 19:21 EVNT.46676267._004445.pool.root.1
[2025-10-12 23:44:22] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 19:21 start_atlas.sh
[2025-10-12 23:44:22] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 19:21 shared
[2025-10-12 23:44:22] -rw-r--r--. 2 boincer umatlas    569686 Oct 12 19:21 input.tar.gz
[2025-10-12 23:44:22] -rw-r--r--. 1 boincer umatlas         0 Oct 12 19:21 boinc_lockfile
[2025-10-12 23:44:22] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 19:21 pandaJob.out
[2025-10-12 23:44:22] -rw-------. 1 boincer umatlas    975603 Oct 12 19:22 agis_schedconf.cvmfs.json
[2025-10-12 23:44:22] drwx------. 5 boincer umatlas      4096 Oct 12 19:22 pilot3
[2025-10-12 23:44:22] -rw-r--r--. 1 boincer umatlas      6936 Oct 12 23:40 init_data.xml
[2025-10-12 23:44:22] -rw-------. 1 boincer umatlas 191203322 Oct 12 23:42 HITS.46676269._087275.pool.root.1
[2025-10-12 23:44:22] -rw-r--r--. 1 boincer umatlas       531 Oct 12 23:42 boinc_task_state.xml
[2025-10-12 23:44:22] -rw-------. 1 boincer umatlas      1034 Oct 12 23:43 memory_monitor_summary.json
[2025-10-12 23:44:22] -rw-------. 1 boincer umatlas   1560580 Oct 12 23:43 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:44:22] -rw-------. 1 boincer umatlas    464474 Oct 12 23:43 log.46676269._087275.job.log.tgz.1
[2025-10-12 23:44:22] -rw-------. 1 boincer umatlas        95 Oct 12 23:43 pilot_heartbeat.json
[2025-10-12 23:44:22] -rw-------. 1 boincer umatlas      7781 Oct 12 23:43 heartbeat.json
[2025-10-12 23:44:22] -rw-------. 1 boincer umatlas      4823 Oct 12 23:44 pilotlog.txt
[2025-10-12 23:44:22] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 23:44 boinc_mmap_file
[2025-10-12 23:44:22] -rw-r--r--. 1 boincer umatlas        28 Oct 12 23:44 wrapper_checkpoint.txt
[2025-10-12 23:44:22] -rw-------. 1 boincer umatlas   1735314 Oct 12 23:44 log.46676269._087275.job.log.1
[2025-10-12 23:44:22] -rw-------. 1 boincer umatlas       357 Oct 12 23:44 output.list
[2025-10-12 23:44:22] -rw-r--r--. 1 boincer umatlas       620 Oct 12 23:44 runtime_log
[2025-10-12 23:44:22] -rw-------. 1 boincer umatlas   2222080 Oct 12 23:44 result.tar.gz
[2025-10-12 23:44:22] -rw-------. 1 boincer umatlas       659 Oct 12 23:44 UsTMDmqjGS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeFlNDmQWaRdn.diag
[2025-10-12 23:44:22] -rw-r--r--. 1 boincer umatlas      8699 Oct 12 23:44 runtime_log.err
[2025-10-12 23:44:22] -rw-r--r--. 1 boincer umatlas     21314 Oct 12 23:44 stderr.txt
[2025-10-12 23:44:22] HITS file was successfully produced:
[2025-10-12 23:44:22] -rw-------. 1 boincer umatlas 191203322 Oct 12 23:42 shared/HITS.pool.root.1
[2025-10-12 23:44:22]  *** Contents of shared directory: ***
[2025-10-12 23:44:22] total 406652
[2025-10-12 23:44:22] -rw-r--r--. 2 boincer umatlas 222382289 Oct 12 19:21 ATLAS.root_0
[2025-10-12 23:44:22] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 19:21 start_atlas.sh
[2025-10-12 23:44:22] -rw-r--r--. 2 boincer umatlas    569686 Oct 12 19:21 input.tar.gz
[2025-10-12 23:44:22] -rw-------. 1 boincer umatlas 191203322 Oct 12 23:42 HITS.pool.root.1
[2025-10-12 23:44:22] -rw-------. 1 boincer umatlas   2222080 Oct 12 23:44 result.tar.gz
23:44:24 (584965): run_atlas exited; CPU time 33802.109901
23:44:24 (584965): called boinc_finish(0)

</stderr_txt>
]]>

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