Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:29:26 (3433442): wrapper (7.7.26015): starting
09:29:26 (3433442): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 09:29:26] Arguments: --nthreads 3
[2025-10-13 09:29:26] Threads: 3
[2025-10-13 09:29:26] Checking for CVMFS
[2025-10-13 09:29:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 09:29:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 09:29:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 09:29:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 09:29:26] 2.9.2.0 1859496 5126 84068 151653 0 57 29795488 36864001 0 130560 0 4135047 99.991 181087 831 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 09:29:26] CVMFS is ok
[2025-10-13 09:29:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 09:29:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 09:29:26] Further information can be found at the LHC@home message board.
[2025-10-13 09:29:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 09:29:26] Checking for apptainer binary...
[2025-10-13 09:29:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 09:29:26] Running /usr/bin/apptainer --version
[2025-10-13 09:29:26] apptainer version 1.4.1-1.1
[2025-10-13 09:29:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 09:29:26] atlasA228b
[2025-10-13 09:29:26] apptainer works
[2025-10-13 09:29:26] Set ATHENA_PROC_NUMBER=3
[2025-10-13 09:29:26] Set ATHENA_CORE_NUMBER=3
[2025-10-13 09:29:26] Starting ATLAS job with PandaID=6840713274
[2025-10-13 09:29:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 10:51:45]  *** The last 200 lines of the pilot log: ***
[2025-10-13 10:51:45] 2025-10-13 08:51:05,228 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 10:51:45] 2025-10-13 08:51:05,228 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 10:51:45] 2025-10-13 08:51:05,228 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 10:51:45] 2025-10-13 08:51:05,228 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 10:51:45] 2025-10-13 08:51:05,228 | INFO     | job 6840713274 has completed (purged errors)
[2025-10-13 10:51:45] 2025-10-13 08:51:05,228 | INFO     | overall cleanup function is called
[2025-10-13 10:51:45] 2025-10-13 08:51:06,235 | INFO     | --- collectZombieJob: --- 10, [3443595]
[2025-10-13 10:51:45] 2025-10-13 08:51:06,235 | INFO     | zombie collector waiting for pid 3443595
[2025-10-13 10:51:45] 2025-10-13 08:51:06,235 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 10:51:45] 2025-10-13 08:51:06,235 | INFO     | collected zombie processes
[2025-10-13 10:51:45] 2025-10-13 08:51:06,235 | INFO     | will attempt to kill all subprocesses of pid=3443595
[2025-10-13 10:51:45] 2025-10-13 08:51:06,279 | INFO     | process IDs to be killed: [3443595] (in reverse order)
[2025-10-13 10:51:45] 2025-10-13 08:51:06,305 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 10:51:45] 2025-10-13 08:51:06,305 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 10:51:45] 2025-10-13 08:51:06,306 | INFO     | did not find any defunct processes belonging to 3443595
[2025-10-13 10:51:45] 2025-10-13 08:51:06,307 | INFO     | did not find any defunct processes belonging to 3443595
[2025-10-13 10:51:45] 2025-10-13 08:51:06,307 | INFO     | ready for new job
[2025-10-13 10:51:45] 2025-10-13 08:51:06,307 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 10:51:45] 2025-10-13 08:51:06,308 | INFO     | ***************************************
[2025-10-13 10:51:45] 2025-10-13 08:51:06,308 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 10:51:45] 2025-10-13 08:51:06,308 | INFO     | ***************************************
[2025-10-13 10:51:45] 2025-10-13 08:51:06,308 | INFO     | 
[2025-10-13 10:51:45] 2025-10-13 08:51:06,308 | INFO     | architecture information:
[2025-10-13 10:51:45] 2025-10-13 08:51:06,308 | INFO     | executing command: cat /etc/os-release
[2025-10-13 10:51:45] 2025-10-13 08:51:06,318 | INFO     | cat /etc/os-release:
[2025-10-13 10:51:45] NAME="CentOS Linux"
[2025-10-13 10:51:45] VERSION="7 (Core)"
[2025-10-13 10:51:45] ID="centos"
[2025-10-13 10:51:45] ID_LIKE="rhel fedora"
[2025-10-13 10:51:45] VERSION_ID="7"
[2025-10-13 10:51:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 10:51:45] ANSI_COLOR="0;31"
[2025-10-13 10:51:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 10:51:45] HOME_URL="https://www.centos.org/"
[2025-10-13 10:51:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 10:51:45] 
[2025-10-13 10:51:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 10:51:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 10:51:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 10:51:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 10:51:45] 
[2025-10-13 10:51:45] 2025-10-13 08:51:06,318 | INFO     | ***************************************
[2025-10-13 10:51:45] 2025-10-13 08:51:06,821 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 10:51:45] 2025-10-13 08:51:06,835 | INFO     | sufficient remaining disk space (274564382720 B)
[2025-10-13 10:51:45] 2025-10-13 08:51:06,835 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 10:51:45] 2025-10-13 08:51:06,835 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 10:51:45] 2025-10-13 08:51:06,835 | INFO     | update_server=False
[2025-10-13 10:51:45] 2025-10-13 08:51:06,835 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 10:51:45] 2025-10-13 08:51:06,835 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:51:45] 2025-10-13 08:51:06,835 | INFO     | aborting loop
[2025-10-13 10:51:45] 2025-10-13 08:51:06,835 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:51:45] 2025-10-13 08:51:06,836 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 10:51:45] 2025-10-13 08:51:07,168 | INFO     | all data control threads have been joined
[2025-10-13 10:51:45] 2025-10-13 08:51:07,540 | INFO     | all payload control threads have been joined
[2025-10-13 10:51:45] 2025-10-13 08:51:07,671 | INFO     | all job control threads have been joined
[2025-10-13 10:51:45] 2025-10-13 08:51:07,841 | INFO     | [job] job monitor thread has finished
[2025-10-13 10:51:45] 2025-10-13 08:51:07,841 | INFO     | [job] queue monitor thread has finished
[2025-10-13 10:51:45] 2025-10-13 08:51:07,841 | INFO     | [job] retrieve thread has finished
[2025-10-13 10:51:45] 2025-10-13 08:51:07,856 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 10:51:45] 2025-10-13 08:51:08,074 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 10:51:45] 2025-10-13 08:51:08,174 | INFO     | [data] control thread has finished
[2025-10-13 10:51:45] 2025-10-13 08:51:08,234 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 10:51:45] 2025-10-13 08:51:08,546 | INFO     | [payload] control thread has finished
[2025-10-13 10:51:45] 2025-10-13 08:51:08,677 | INFO     | [job] control thread has finished
[2025-10-13 10:51:45] 2025-10-13 08:51:08,765 | INFO     | [payload] validate_post thread has finished
[2025-10-13 10:51:45] 2025-10-13 08:51:08,856 | INFO     | [data] copytool_in thread has finished
[2025-10-13 10:51:45] 2025-10-13 08:51:09,105 | INFO     | [payload] failed_post thread has finished
[2025-10-13 10:51:45] 2025-10-13 08:51:09,256 | INFO     | [job] validate thread has finished
[2025-10-13 10:51:45] 2025-10-13 08:51:09,317 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 10:51:45] 2025-10-13 08:51:10,080 | INFO     | [data] copytool_out thread has finished
[2025-10-13 10:51:45] 2025-10-13 08:51:10,843 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 10:51:45] 2025-10-13 08:51:17,653 | INFO     | job.realtimelogging is not enabled
[2025-10-13 10:51:45] 2025-10-13 08:51:18,659 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 10:51:45] 2025-10-13 08:51:36,869 | INFO     | PID=3437161 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 10:51:45] 2025-10-13 08:51:36,869 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 10:51:45] 2025-10-13 08:51:36,869 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 10:51:45] 2025-10-13 08:51:36,869 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 10:51:45] 2025-10-13 08:51:38,230 | INFO     | [monitor] cgroup control has ended
[2025-10-13 10:51:45] 2025-10-13 08:51:39,881 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140220786792256)>', '<ExcThread(monitor, started 140220079011584)>']
[2025-10-13 10:51:45] 2025-10-13 08:51:40,886 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 10:51:45] 2025-10-13 08:51:40,887 | INFO     | [monitor] control thread has ended
[2025-10-13 10:51:45] 2025-10-13 08:51:44,905 | INFO     | all workflow threads have been joined
[2025-10-13 10:51:45] 2025-10-13 08:51:44,905 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 10:51:45] 2025-10-13 08:51:44,905 | INFO     | traces error code: 0
[2025-10-13 10:51:45] 2025-10-13 08:51:44,905 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 10:51:45] 2025-10-13 08:51:44,956 [wrapper] ==== pilot stdout END ====
[2025-10-13 10:51:45] 2025-10-13 08:51:44,959 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 10:51:45] 2025-10-13 08:51:44,962 [wrapper] pilotpid: 3437161
[2025-10-13 10:51:45] 2025-10-13 08:51:44,964 [wrapper] Pilot exit status: 0
[2025-10-13 10:51:45] 2025-10-13 08:51:44,972 [wrapper] pandaids: 6840713274
[2025-10-13 10:51:45] 2025-10-13 08:51:44,989 [wrapper] cleanup supervisor_pilot 3455369 3437162
[2025-10-13 10:51:45] 2025-10-13 08:51:44,992 [wrapper] Test setup, not cleaning
[2025-10-13 10:51:45] 2025-10-13 08:51:44,994 [wrapper] apfmon messages muted
[2025-10-13 10:51:45] 2025-10-13 08:51:44,997 [wrapper] ==== wrapper stdout END ====
[2025-10-13 10:51:45] 2025-10-13 08:51:45,000 [wrapper] ==== wrapper stderr END ====
[2025-10-13 10:51:45]  *** Error codes and diagnostics ***
[2025-10-13 10:51:45]     "exeErrorCode": 0,
[2025-10-13 10:51:45]     "exeErrorDiag": "",
[2025-10-13 10:51:45]     "pilotErrorCode": 0,
[2025-10-13 10:51:45]     "pilotErrorDiag": "",
[2025-10-13 10:51:45]  *** Listing of results directory ***
[2025-10-13 10:51:45] total 404884
[2025-10-13 10:51:45] -rw-r--r-- 1 boinc boinc    557409 Oct 12 21:28 pilot3.tar.gz
[2025-10-13 10:51:45] -rw-r--r-- 1 boinc boinc      5112 Oct 12 21:35 queuedata.json
[2025-10-13 10:51:45] -rwx------ 1 boinc boinc     36292 Oct 12 21:35 runpilot2-wrapper.sh
[2025-10-13 10:51:45] -rw-r--r-- 1 boinc boinc       100 Oct 13 09:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 10:51:45] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 09:29 run_atlas
[2025-10-13 10:51:45] -rw-r--r-- 1 boinc boinc       105 Oct 13 09:29 job.xml
[2025-10-13 10:51:45] -rw-r--r-- 2 boinc boinc 218433266 Oct 13 09:29 EVNT.46676267._004458.pool.root.1
[2025-10-13 10:51:45] -rw-r--r-- 2 boinc boinc    569683 Oct 13 09:29 input.tar.gz
[2025-10-13 10:51:45] -rw-r--r-- 2 boinc boinc     15120 Oct 13 09:29 start_atlas.sh
[2025-10-13 10:51:45] drwxrwx--x 2 boinc boinc      4096 Oct 13 09:29 shared
[2025-10-13 10:51:45] -rw-r--r-- 1 boinc boinc         0 Oct 13 09:29 boinc_setup_complete
[2025-10-13 10:51:45] -rw-r--r-- 1 boinc boinc      6449 Oct 13 09:29 init_data.xml
[2025-10-13 10:51:45] -rw-r--r-- 1 boinc boinc         0 Oct 13 09:29 boinc_lockfile
[2025-10-13 10:51:45] -rw-r--r-- 1 boinc boinc      2550 Oct 13 09:29 pandaJob.out
[2025-10-13 10:51:45] -rw------- 1 boinc boinc    972849 Oct 13 09:29 agis_schedconf.cvmfs.json
[2025-10-13 10:51:45] -rw------- 1 boinc boinc   1560580 Oct 13 09:29 agis_ddmendpoints.agis.ALL.json
[2025-10-13 10:51:45] drwx------ 5 boinc boinc      4096 Oct 13 09:29 pilot3
[2025-10-13 10:51:45] -rw------- 1 boinc boinc 190326443 Oct 13 10:50 HITS.46676269._087596.pool.root.1
[2025-10-13 10:51:45] -rw-r--r-- 1 boinc boinc       529 Oct 13 10:50 boinc_task_state.xml
[2025-10-13 10:51:45] -rw------- 1 boinc boinc      1017 Oct 13 10:50 memory_monitor_summary.json
[2025-10-13 10:51:45] -rw------- 1 boinc boinc        95 Oct 13 10:50 pilot_heartbeat.json
[2025-10-13 10:51:45] -rw------- 1 boinc boinc    254855 Oct 13 10:50 log.46676269._087596.job.log.tgz.1
[2025-10-13 10:51:45] -rw------- 1 boinc boinc      7761 Oct 13 10:51 heartbeat.json
[2025-10-13 10:51:45] -rw-r--r-- 1 boinc boinc      8192 Oct 13 10:51 boinc_mmap_file
[2025-10-13 10:51:45] -rw-r--r-- 1 boinc boinc        27 Oct 13 10:51 wrapper_checkpoint.txt
[2025-10-13 10:51:45] -rw------- 1 boinc boinc      4824 Oct 13 10:51 pilotlog.txt
[2025-10-13 10:51:45] -rw------- 1 boinc boinc    720354 Oct 13 10:51 log.46676269._087596.job.log.1
[2025-10-13 10:51:45] -rw------- 1 boinc boinc       357 Oct 13 10:51 output.list
[2025-10-13 10:51:45] -rw-r--r-- 1 boinc boinc       620 Oct 13 10:51 runtime_log
[2025-10-13 10:51:45] -rw------- 1 boinc boinc    993280 Oct 13 10:51 result.tar.gz
[2025-10-13 10:51:45] -rw-r--r-- 1 boinc boinc      8797 Oct 13 10:51 runtime_log.err
[2025-10-13 10:51:45] -rw------- 1 boinc boinc       662 Oct 13 10:51 aXjKDmM2GS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmAIlNDmy8QD6n.diag
[2025-10-13 10:51:45] -rw-r--r-- 1 boinc boinc     11310 Oct 13 10:51 stderr.txt
[2025-10-13 10:51:45] HITS file was successfully produced:
[2025-10-13 10:51:45] -rw------- 1 boinc boinc 190326443 Oct 13 10:50 shared/HITS.pool.root.1
[2025-10-13 10:51:45]  *** Contents of shared directory: ***
[2025-10-13 10:51:45] total 400740
[2025-10-13 10:51:45] -rw-r--r-- 2 boinc boinc 218433266 Oct 13 09:29 ATLAS.root_0
[2025-10-13 10:51:45] -rw-r--r-- 2 boinc boinc    569683 Oct 13 09:29 input.tar.gz
[2025-10-13 10:51:45] -rw-r--r-- 2 boinc boinc     15120 Oct 13 09:29 start_atlas.sh
[2025-10-13 10:51:45] -rw------- 1 boinc boinc 190326443 Oct 13 10:50 HITS.pool.root.1
[2025-10-13 10:51:45] -rw------- 1 boinc boinc    993280 Oct 13 10:51 result.tar.gz
10:51:46 (3433442): run_atlas exited; CPU time 13962.770895
10:51:46 (3433442): called boinc_finish(0)

</stderr_txt>
]]>

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