Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:48:36 (9132): wrapper (7.7.26015): starting
18:48:36 (9132): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 18:48:36] Arguments: --nthreads 12
[2025-10-12 18:48:36] Threads: 12
[2025-10-12 18:48:36] Checking for CVMFS
[2025-10-12 18:48:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:48:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:48:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:48:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:48:37] 2.11.2.0 14820 78846 86972 151640 2 59 15479645 20275200 1 130560 0 49400080 99.991 2517651 45557 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 18:48:37] CVMFS is ok
[2025-10-12 18:48:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:48:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:48:37] Further information can be found at the LHC@home message board.
[2025-10-12 18:48:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:48:37] Checking for apptainer binary...
[2025-10-12 18:48:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:48:37] Running /usr/bin/apptainer --version
[2025-10-12 18:48:37] apptainer version 1.3.2-1.el7
[2025-10-12 18:48:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:48:38] c-205-27.aglt2.org
[2025-10-12 18:48:38] apptainer works
[2025-10-12 18:48:38] Set ATHENA_PROC_NUMBER=12
[2025-10-12 18:48:38] Set ATHENA_CORE_NUMBER=12
[2025-10-12 18:48:38] Starting ATLAS job with PandaID=6840750373
[2025-10-12 18:48:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:05:06]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:05:06]  scope=mc23_13p6TeV
[2025-10-12 20:05:06]  status=None
[2025-10-12 20:05:06]  status_code=0
[2025-10-12 20:05:06]  storage_token=
[2025-10-12 20:05:06]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840750373/log.46676269._089745.job.log.tgz.1
[2025-10-12 20:05:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/54/98/log.46676269._089745.job.log.tgz.1
[2025-10-12 20:05:06]  workdir=None
[2025-10-12 20:05:06] ]
[2025-10-12 20:05:06] 2025-10-13 00:04:15,727 | INFO     | transferring file log.46676269._089745.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840750373/log.46676269._089745.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 20:05:06] 2025-10-13 00:04:15,727 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840750373/log.46676269._089745.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._089745.job
[2025-10-12 20:05:06] 2025-10-13 00:04:15,749 | INFO     | adding to output.list: log.46676269._089745.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/54/98/log.46676269._089745.job.log.tg
[2025-10-12 20:05:06] 2025-10-13 00:04:15,750 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 20:05:06] 2025-10-13 00:04:15,751 | INFO     | summary of transferred files:
[2025-10-12 20:05:06] 2025-10-13 00:04:15,751 | INFO     |  -- lfn=log.46676269._089745.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 20:05:06] 2025-10-13 00:04:15,751 | INFO     | stage-out finished correctly
[2025-10-12 20:05:06] 2025-10-13 00:04:17,521 | INFO     | time since job start (4524s) is within the limit (172800.0s)
[2025-10-12 20:05:06] 2025-10-13 00:04:17,655 | INFO     | monitor loop #339: job 0:6840750373 is in state 'finished'
[2025-10-12 20:05:06] 2025-10-13 00:04:17,656 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:05:06] 2025-10-13 00:04:18,939 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 20:05:06] 2025-10-13 00:04:19,527 | INFO     | time since job start (4526s) is within the limit (172800.0s)
[2025-10-12 20:05:06] 2025-10-13 00:04:20,008 | INFO     | job 6840750373 has state=finished
[2025-10-12 20:05:06] 2025-10-13 00:04:20,008 | INFO     | preparing for final server update for job 6840750373 in state='finished'
[2025-10-12 20:05:06] 2025-10-13 00:04:20,009 | INFO     | this job has now completed (state=finished)
[2025-10-12 20:05:06] 2025-10-13 00:04:20,009 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 20:05:06] 2025-10-13 00:04:20,009 | INFO     | log transfer has been attempted: DONE
[2025-10-12 20:05:06] 2025-10-13 00:04:20,010 | INFO     | job 6840750373 has finished - writing final server update
[2025-10-12 20:05:06] 2025-10-13 00:04:20,010 | INFO     | total number of processed events: 400 (read)
[2025-10-12 20:05:06] 2025-10-13 00:04:20,011 | INFO     | executing command: lscpu
[2025-10-12 20:05:06] 2025-10-13 00:04:20,036 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 20:05:06] 2025-10-13 00:04:20,158 | INFO     | monitor loop #340: job 0:6840750373 is in state 'finished'
[2025-10-12 20:05:06] 2025-10-13 00:04:20,158 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:05:06] 2025-10-13 00:04:20,649 | INFO     | PID=12804 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 20:05:06] 2025-10-13 00:04:21,650 | INFO     | time since job start (4528s) is within the limit (172800.0s)
[2025-10-12 20:05:06] 2025-10-13 00:04:22,661 | INFO     | monitor loop #341: job 0:6840750373 is in state 'finished'
[2025-10-12 20:05:06] 2025-10-13 00:04:22,661 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:05:06] 2025-10-13 00:04:23,655 | INFO     | time since job start (4530s) is within the limit (172800.0s)
[2025-10-12 20:05:06] 2025-10-13 00:04:24,728 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 20:05:06] 2025-10-13 00:04:24,732 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1740.1666666666667
[2025-10-12 20:05:06] 2025-10-13 00:04:24,734 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840750373/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 20:05:06] 2025-10-13 00:04:24,736 | INFO     | extracted standard info from prmon json
[2025-10-12 20:05:06] 2025-10-13 00:04:24,736 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 20:05:06] 2025-10-13 00:04:24,736 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 20:05:06] 2025-10-13 00:04:24,737 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 20:05:06] 2025-10-13 00:04:24,737 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 20:05:06] 2025-10-13 00:04:24,738 | INFO     | fitting pss+swap vs Time
[2025-10-12 20:05:06] 2025-10-13 00:04:24,738 | INFO     | sum of square deviations: 93240818.0
[2025-10-12 20:05:06] 2025-10-13 00:04:24,739 | INFO     | sum of deviations: -7440573820.0
[2025-10-12 20:05:06] 2025-10-13 00:04:24,739 | INFO     | mean x: 1760311680.0
[2025-10-12 20:05:06] 2025-10-13 00:04:24,739 | INFO     | mean y: 2788021.8358208956
[2025-10-12 20:05:06] 2025-10-13 00:04:24,739 | INFO     | -- intersect: 140474839663.94193
[2025-10-12 20:05:06] 2025-10-13 00:04:24,739 | INFO     | intersect: 140474839663.94193
[2025-10-12 20:05:06] 2025-10-13 00:04:24,739 | INFO     | chi2: 0.08761066261352228
[2025-10-12 20:05:06] 2025-10-13 00:04:24,740 | INFO     | -- intersect: 140474839663.94193
[2025-10-12 20:05:06] 2025-10-13 00:04:24,740 | INFO     | current memory leak: -79.80 B/s (using 67 data points, chi2=0.09)
[2025-10-12 20:05:06] 2025-10-13 00:04:24,740 | INFO     | could have reported an average CPU frequency of 2052 MHz (6 samples)
[2025-10-12 20:05:06] 2025-10-13 00:04:24,740 | INFO     | ..............................
[2025-10-12 20:05:06] 2025-10-13 00:04:24,740 | INFO     | . Timing measurements:
[2025-10-12 20:05:06] 2025-10-13 00:04:24,740 | INFO     | . get job = 0 s
[2025-10-12 20:05:06] 2025-10-13 00:04:24,740 | INFO     | . initial setup = 2 s
[2025-10-12 20:05:06] 2025-10-13 00:04:24,741 | INFO     | . payload setup = 7 s
[2025-10-12 20:05:06] 2025-10-13 00:04:24,741 | INFO     | . stage-in = 0 s
[2025-10-12 20:05:06] 2025-10-13 00:04:24,741 | INFO     | . payload execution = 4494 s
[2025-10-12 20:05:06] 2025-10-13 00:04:24,741 | INFO     | . stage-out = 0 s
[2025-10-12 20:05:06] 2025-10-13 00:04:24,741 | INFO     | . log creation = 0 s
[2025-10-12 20:05:06] 2025-10-13 00:04:24,741 | INFO     | ..............................
[2025-10-12 20:05:06] 2025-10-13 00:04:24,824 | INFO     | 
[2025-10-12 20:05:06] 2025-10-13 00:04:24,824 | INFO     | job summary report
[2025-10-12 20:05:06] 2025-10-13 00:04:24,824 | INFO     | --------------------------------------------------
[2025-10-12 20:05:06] 2025-10-13 00:04:24,824 | INFO     | PanDA job id: 6840750373
[2025-10-12 20:05:06] 2025-10-13 00:04:24,824 | INFO     | task id: 46676269
[2025-10-12 20:05:06] 2025-10-13 00:04:24,824 | INFO     | errors: (none)
[2025-10-12 20:05:06] 2025-10-13 00:04:24,824 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 20:05:06] 2025-10-13 00:04:24,825 | INFO     | pilot state: finished 
[2025-10-12 20:05:06] 2025-10-13 00:04:24,825 | INFO     | transexitcode: 0
[2025-10-12 20:05:06] 2025-10-13 00:04:24,825 | INFO     | exeerrorcode: 0
[2025-10-12 20:05:06] 2025-10-13 00:04:24,825 | INFO     | exeerrordiag: 
[2025-10-12 20:05:06] 2025-10-13 00:04:24,825 | INFO     | exitcode: 0
[2025-10-12 20:05:06] 2025-10-13 00:04:24,825 | INFO     | exitmsg: OK
[2025-10-12 20:05:06] 2025-10-13 00:04:24,825 | INFO     | cpuconsumptiontime: 47765 s
[2025-10-12 20:05:06] 2025-10-13 00:04:24,825 | INFO     | nevents: 400
[2025-10-12 20:05:06] 2025-10-13 00:04:24,826 | INFO     | neventsw: 0
[2025-10-12 20:05:06] 2025-10-13 00:04:24,826 | INFO     | pid: 19215
[2025-10-12 20:05:06] 2025-10-13 00:04:24,826 | INFO     | pgrp: 19215
[2025-10-12 20:05:06] 2025-10-13 00:04:24,826 | INFO     | corecount: 12
[2025-10-12 20:05:06] 2025-10-13 00:04:24,826 | INFO     | event service: False
[2025-10-12 20:05:06] 2025-10-13 00:04:24,826 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4505: 2375308, 4506: 2384306, 4509: 2384362, 4515: 2384684}
[2025-10-12 20:05:06] 2025-10-13 00:04:24,826 | INFO     | --------------------------------------------------
[2025-10-12 20:05:06] 2025-10-13 00:04:24,826 | INFO     | 
[2025-10-12 20:05:06] 2025-10-13 00:04:24,827 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 20:05:06] 2025-10-13 00:04:24,852 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,852 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,852 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,852 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,853 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,853 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,853 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,853 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,853 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,853 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,854 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,854 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,854 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,854 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,854 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,855 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,855 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,855 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 20:05:06] 2025-10-13 00:04:24,855 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,855 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 20:05:06] 2025-10-13 00:04:24,855 | INFO     | job 6840750373 has completed (purged errors)
[2025-10-12 20:05:06] 2025-10-13 00:04:24,856 | INFO     | overall cleanup function is called
[2025-10-12 20:05:06] 2025-10-13 00:04:25,864 | INFO     | --- collectZombieJob: --- 10, [19215]
[2025-10-12 20:05:06] 2025-10-13 00:04:25,864 | INFO     | zombie collector waiting for pid 19215
[2025-10-12 20:05:06] 2025-10-13 00:04:25,864 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:05:06] 2025-10-13 00:04:25,864 | INFO     | collected zombie processes
[2025-10-12 20:05:06] 2025-10-13 00:04:25,865 | INFO     | will attempt to kill all subprocesses of pid=19215
[2025-10-12 20:05:06] 2025-10-13 00:04:25,955 | INFO     | process IDs to be killed: [19215] (in reverse order)
[2025-10-12 20:05:06] 2025-10-13 00:04:26,061 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:05:06] 2025-10-13 00:04:26,062 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:05:06] 2025-10-13 00:04:26,066 | INFO     | did not find any defunct processes belonging to 19215
[2025-10-12 20:05:06] 2025-10-13 00:04:26,069 | INFO     | did not find any defunct processes belonging to 19215
[2025-10-12 20:05:06] 2025-10-13 00:04:26,069 | INFO     | ready for new job
[2025-10-12 20:05:06] 2025-10-13 00:04:26,069 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:05:06] 2025-10-13 00:04:26,070 | INFO     | ***************************************
[2025-10-12 20:05:06] 2025-10-13 00:04:26,070 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:05:06] 2025-10-13 00:04:26,070 | INFO     | ***************************************
[2025-10-12 20:05:06] 2025-10-13 00:04:26,070 | INFO     | 
[2025-10-12 20:05:06] 2025-10-13 00:04:26,071 | INFO     | architecture information:
[2025-10-12 20:05:06] 2025-10-13 00:04:26,071 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:05:06] 2025-10-13 00:04:26,087 | INFO     | cat /etc/os-release:
[2025-10-12 20:05:06] NAME="CentOS Linux"
[2025-10-12 20:05:06] VERSION="7 (Core)"
[2025-10-12 20:05:06] ID="centos"
[2025-10-12 20:05:06] ID_LIKE="rhel fedora"
[2025-10-12 20:05:06] VERSION_ID="7"
[2025-10-12 20:05:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:05:06] ANSI_COLOR="0;31"
[2025-10-12 20:05:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:05:06] HOME_URL="https://www.centos.org/"
[2025-10-12 20:05:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:05:06] 
[2025-10-12 20:05:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:05:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:05:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:05:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:05:06] 
[2025-10-12 20:05:06] 2025-10-13 00:04:26,087 | INFO     | ***************************************
[2025-10-12 20:05:06] 2025-10-13 00:04:26,590 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 20:05:06] 2025-10-13 00:04:26,606 | INFO     | sufficient remaining disk space (29364322304 B)
[2025-10-12 20:05:06] 2025-10-13 00:04:26,606 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:05:06] 2025-10-13 00:04:26,607 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:05:06] 2025-10-13 00:04:26,607 | INFO     | update_server=False
[2025-10-12 20:05:06] 2025-10-13 00:04:26,607 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:05:06] 2025-10-13 00:04:26,607 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:05:06] 2025-10-13 00:04:26,608 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:05:06] 2025-10-13 00:04:26,608 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:05:06] 2025-10-13 00:04:26,608 | INFO     | aborting loop
[2025-10-12 20:05:06] 2025-10-13 00:04:26,624 | INFO     | all payload control threads have been joined
[2025-10-12 20:05:06] 2025-10-13 00:04:26,903 | INFO     | all data control threads have been joined
[2025-10-12 20:05:06] 2025-10-13 00:04:27,613 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:05:06] 2025-10-13 00:04:27,614 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:05:06] 2025-10-13 00:04:27,615 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:05:06] 2025-10-13 00:04:27,628 | INFO     | [payload] control thread has finished
[2025-10-12 20:05:06] 2025-10-13 00:04:27,651 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:05:06] 2025-10-13 00:04:27,806 | INFO     | all job control threads have been joined
[2025-10-12 20:05:06] 2025-10-13 00:04:27,910 | INFO     | [data] control thread has finished
[2025-10-12 20:05:06] 2025-10-13 00:04:27,981 | INFO     | [job] validate thread has finished
[2025-10-12 20:05:06] 2025-10-13 00:04:28,193 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:05:06] 2025-10-13 00:04:28,375 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:05:06] 2025-10-13 00:04:28,376 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:05:06] 2025-10-13 00:04:28,614 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:05:06] 2025-10-13 00:04:28,787 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:05:06] 2025-10-13 00:04:28,812 | INFO     | [job] control thread has finished
[2025-10-12 20:05:06] 2025-10-13 00:04:28,853 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:05:06] 2025-10-13 00:04:29,528 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:05:06] 2025-10-13 00:04:33,534 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:05:06] 2025-10-13 00:04:37,508 | INFO     | job.realtimelogging is not enabled
[2025-10-12 20:05:06] 2025-10-13 00:04:38,513 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:05:06] 2025-10-13 00:04:56,854 | INFO     | PID=12804 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 20:05:06] 2025-10-13 00:04:56,855 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:05:06] 2025-10-13 00:04:56,855 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:05:06] 2025-10-13 00:04:56,855 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:05:06] 2025-10-13 00:05:00,303 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:05:06] 2025-10-13 00:05:00,850 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140245573613376)>', '<ExcThread(monitor, started 140245278373632)>']
[2025-10-12 20:05:06] 2025-10-13 00:05:00,875 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:05:06] 2025-10-13 00:05:00,875 | INFO     | [monitor] control thread has ended
[2025-10-12 20:05:06] 2025-10-13 00:05:05,875 | INFO     | all workflow threads have been joined
[2025-10-12 20:05:06] 2025-10-13 00:05:05,875 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:05:06] 2025-10-13 00:05:05,876 | INFO     | traces error code: 0
[2025-10-12 20:05:06] 2025-10-13 00:05:05,876 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:05:06] 2025-10-13 00:05:05,975 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:05:06] 2025-10-13 00:05:05,978 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:05:06] 2025-10-13 00:05:05,982 [wrapper] pilotpid: 12804
[2025-10-12 20:05:06] 2025-10-13 00:05:05,985 [wrapper] Pilot exit status: 0
[2025-10-12 20:05:06] 2025-10-13 00:05:06,001 [wrapper] pandaids: 6840750373
[2025-10-12 20:05:06] 2025-10-13 00:05:06,045 [wrapper] cleanup supervisor_pilot  4451 12805
[2025-10-12 20:05:06] 2025-10-13 00:05:06,049 [wrapper] Test setup, not cleaning
[2025-10-12 20:05:06] 2025-10-13 00:05:06,053 [wrapper] apfmon messages muted
[2025-10-12 20:05:06] 2025-10-13 00:05:06,057 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:05:06] 2025-10-13 00:05:06,061 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:05:06]  *** Error codes and diagnostics ***
[2025-10-12 20:05:06]     "exeErrorCode": 0,
[2025-10-12 20:05:06]     "exeErrorDiag": "",
[2025-10-12 20:05:06]     "pilotErrorCode": 0,
[2025-10-12 20:05:06]     "pilotErrorDiag": "",
[2025-10-12 20:05:06]  *** Listing of results directory ***
[2025-10-12 20:05:06] total 413068
[2025-10-12 20:05:06] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 17:12 pilot3.tar.gz
[2025-10-12 20:05:06] -rwx------ 1 boincer umatlas     36292 Oct 12 17:17 runpilot2-wrapper.sh
[2025-10-12 20:05:06] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 17:17 queuedata.json
[2025-10-12 20:05:06] -rw-r--r-- 1 boincer umatlas       100 Oct 12 18:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:05:06] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 18:48 run_atlas
[2025-10-12 20:05:06] -rw-r--r-- 1 boincer umatlas       105 Oct 12 18:48 job.xml
[2025-10-12 20:05:06] -rw-r--r-- 2 boincer umatlas 220418489 Oct 12 18:48 EVNT.46676267._004779.pool.root.1
[2025-10-12 20:05:06] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 18:48 start_atlas.sh
[2025-10-12 20:05:06] drwxrwx--x 2 boincer umatlas      4096 Oct 12 18:48 shared
[2025-10-12 20:05:06] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 18:48 input.tar.gz
[2025-10-12 20:05:06] -rw-r--r-- 1 boincer umatlas         0 Oct 12 18:48 boinc_lockfile
[2025-10-12 20:05:06] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 18:48 pandaJob.out
[2025-10-12 20:05:06] -rw------- 1 boincer umatlas    975603 Oct 12 18:48 agis_schedconf.cvmfs.json
[2025-10-12 20:05:06] -rw------- 1 boincer umatlas   1560580 Oct 12 18:48 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:05:06] drwx------ 5 boincer umatlas      4096 Oct 12 18:48 pilot3
[2025-10-12 20:05:06] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 20:02 init_data.xml
[2025-10-12 20:05:06] -rw------- 1 boincer umatlas 196539062 Oct 12 20:03 HITS.46676269._089745.pool.root.1
[2025-10-12 20:05:06] -rw-r--r-- 1 boincer umatlas       529 Oct 12 20:03 boinc_task_state.xml
[2025-10-12 20:05:06] -rw------- 1 boincer umatlas      1049 Oct 12 20:04 memory_monitor_summary.json
[2025-10-12 20:05:06] -rw------- 1 boincer umatlas    397762 Oct 12 20:04 log.46676269._089745.job.log.tgz.1
[2025-10-12 20:05:06] -rw------- 1 boincer umatlas      7855 Oct 12 20:04 heartbeat.json
[2025-10-12 20:05:06] -rw------- 1 boincer umatlas        95 Oct 12 20:04 pilot_heartbeat.json
[2025-10-12 20:05:06] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 20:04 boinc_mmap_file
[2025-10-12 20:05:06] -rw-r--r-- 1 boincer umatlas        27 Oct 12 20:04 wrapper_checkpoint.txt
[2025-10-12 20:05:06] -rw------- 1 boincer umatlas      4818 Oct 12 20:05 pilotlog.txt
[2025-10-12 20:05:06] -rw------- 1 boincer umatlas    658388 Oct 12 20:05 log.46676269._089745.job.log.1
[2025-10-12 20:05:06] -rw------- 1 boincer umatlas       357 Oct 12 20:05 output.list
[2025-10-12 20:05:06] -rw-r--r-- 1 boincer umatlas       620 Oct 12 20:05 runtime_log
[2025-10-12 20:05:06] -rw------- 1 boincer umatlas   1075200 Oct 12 20:05 result.tar.gz
[2025-10-12 20:05:06] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 20:05 runtime_log.err
[2025-10-12 20:05:06] -rw------- 1 boincer umatlas       659 Oct 12 20:05 JImNDmjcIS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeblNDmVHZmWn.diag
[2025-10-12 20:05:06] -rw-r--r-- 1 boincer umatlas     21999 Oct 12 20:05 stderr.txt
[2025-10-12 20:05:06] HITS file was successfully produced:
[2025-10-12 20:05:06] -rw------- 1 boincer umatlas 196539062 Oct 12 20:03 shared/HITS.pool.root.1
[2025-10-12 20:05:06]  *** Contents of shared directory: ***
[2025-10-12 20:05:06] total 408828
[2025-10-12 20:05:06] -rw-r--r-- 2 boincer umatlas 220418489 Oct 12 18:48 ATLAS.root_0
[2025-10-12 20:05:06] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 18:48 start_atlas.sh
[2025-10-12 20:05:06] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 18:48 input.tar.gz
[2025-10-12 20:05:06] -rw------- 1 boincer umatlas 196539062 Oct 12 20:03 HITS.pool.root.1
[2025-10-12 20:05:06] -rw------- 1 boincer umatlas   1075200 Oct 12 20:05 result.tar.gz
20:05:07 (9132): run_atlas exited; CPU time 47739.901845
20:05:07 (9132): called boinc_finish(0)

</stderr_txt>
]]>

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