Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:34:05 (1601): wrapper (7.7.26015): starting
10:34:05 (1601): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 10:34:06] Arguments: --nthreads 8
[2025-10-13 10:34:06] Threads: 8
[2025-10-13 10:34:06] Checking for CVMFS
[2025-10-13 10:34:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 10:34:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 10:34:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 10:34:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 10:34:08] 2.11.2.0 6116 221795 138300 151654 2 60 19349569 25165824 4632 130560 0 121729238 99.896 62502854 4008 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-13 10:34:08] CVMFS is ok
[2025-10-13 10:34:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 10:34:08] Checking for apptainer binary...
[2025-10-13 10:34:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 10:34:08] Running /usr/bin/apptainer --version
[2025-10-13 10:34:08] apptainer version 1.3.2-1.el7
[2025-10-13 10:34:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 10:34:21] cg-vwn314.simple-grid.lan
[2025-10-13 10:34:21] apptainer works
[2025-10-13 10:34:21] Set ATHENA_PROC_NUMBER=8
[2025-10-13 10:34:21] Set ATHENA_CORE_NUMBER=8
[2025-10-13 10:34:21] Starting ATLAS job with PandaID=6840430332
[2025-10-13 10:34:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 14:43:44]  *** The last 200 lines of the pilot log: ***
[2025-10-13 14:43:44] 2025-10-13 12:43:01,334 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 14:43:44] 2025-10-13 12:43:01,334 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 14:43:44] 2025-10-13 12:43:01,339 | INFO     | fitting pss+swap vs Time
[2025-10-13 14:43:44] 2025-10-13 12:43:01,339 | INFO     | sum of square deviations: 3972995422.5
[2025-10-13 14:43:44] 2025-10-13 12:43:01,341 | INFO     | sum of deviations: -12609397626.499998
[2025-10-13 14:43:44] 2025-10-13 12:43:01,342 | INFO     | mean x: 1760352147.5
[2025-10-13 14:43:44] 2025-10-13 12:43:01,342 | INFO     | mean y: 2490616.8076923075
[2025-10-13 14:43:44] 2025-10-13 12:43:01,342 | INFO     | -- intersect: 5589454061.261718
[2025-10-13 14:43:44] 2025-10-13 12:43:01,342 | INFO     | intersect: 5589454061.261718
[2025-10-13 14:43:44] 2025-10-13 12:43:01,343 | INFO     | chi2: 2.3962738387695355
[2025-10-13 14:43:44] 2025-10-13 12:43:01,343 | INFO     | sum of square deviations: 3723716330.0
[2025-10-13 14:43:44] 2025-10-13 12:43:01,345 | INFO     | sum of deviations: 2967977508.9999976
[2025-10-13 14:43:44] 2025-10-13 12:43:01,345 | INFO     | mean x: 1760351995.0
[2025-10-13 14:43:44] 2025-10-13 12:43:01,345 | INFO     | mean y: 2499982.8384279474
[2025-10-13 14:43:44] 2025-10-13 12:43:01,345 | INFO     | -- intersect: -1400583567.5896134
[2025-10-13 14:43:44] 2025-10-13 12:43:01,345 | INFO     | intersect: -1400583567.5896134
[2025-10-13 14:43:44] 2025-10-13 12:43:01,346 | INFO     | chi2: 1.6292374474693876
[2025-10-13 14:43:44] 2025-10-13 12:43:01,346 | INFO     | current chi2=1.6292374474693876 (change=32.00954660899749 %)
[2025-10-13 14:43:44] 2025-10-13 12:43:01,346 | INFO     | sum of square deviations: 3485088600.0
[2025-10-13 14:43:44] 2025-10-13 12:43:01,348 | INFO     | sum of deviations: 2831255067.500002
[2025-10-13 14:43:44] 2025-10-13 12:43:01,348 | INFO     | mean x: 1760351842.5
[2025-10-13 14:43:44] 2025-10-13 12:43:01,348 | INFO     | mean y: 2499895.4508928573
[2025-10-13 14:43:44] 2025-10-13 12:43:01,348 | INFO     | -- intersect: -1427594327.8813605
[2025-10-13 14:43:44] 2025-10-13 12:43:01,349 | INFO     | intersect: -1427594327.8813605
[2025-10-13 14:43:44] 2025-10-13 12:43:01,349 | INFO     | chi2: 1.6293227199648421
[2025-10-13 14:43:44] 2025-10-13 12:43:01,349 | INFO     | current chi2=1.6293227199648421 (change=-0.005233889976380381 %)
[2025-10-13 14:43:44] 2025-10-13 12:43:01,349 | INFO     | right removable region: 223
[2025-10-13 14:43:44] 2025-10-13 12:43:01,350 | INFO     | sum of square deviations: 3723716330.0
[2025-10-13 14:43:44] 2025-10-13 12:43:01,351 | INFO     | sum of deviations: -47299884034.99999
[2025-10-13 14:43:44] 2025-10-13 12:43:01,352 | INFO     | mean x: 1760352300.0
[2025-10-13 14:43:44] 2025-10-13 12:43:01,352 | INFO     | mean y: 2511623.3973799124
[2025-10-13 14:43:44] 2025-10-13 12:43:01,352 | INFO     | -- intersect: 22363092363.64553
[2025-10-13 14:43:44] 2025-10-13 12:43:01,352 | INFO     | intersect: 22363092363.64553
[2025-10-13 14:43:44] 2025-10-13 12:43:01,352 | INFO     | chi2: 0.9635128935124228
[2025-10-13 14:43:44] 2025-10-13 12:43:01,352 | INFO     | current chi2=0.9635128935124228 (change=59.791202577783096 %)
[2025-10-13 14:43:44] 2025-10-13 12:43:01,353 | INFO     | sum of square deviations: 3485088600.0
[2025-10-13 14:43:44] 2025-10-13 12:43:01,355 | INFO     | sum of deviations: -44116696635.0
[2025-10-13 14:43:44] 2025-10-13 12:43:01,355 | INFO     | mean x: 1760352452.5
[2025-10-13 14:43:44] 2025-10-13 12:43:01,355 | INFO     | mean y: 2509556.8928571427
[2025-10-13 14:43:44] 2025-10-13 12:43:01,355 | INFO     | -- intersect: 22286285962.927628
[2025-10-13 14:43:44] 2025-10-13 12:43:01,355 | INFO     | intersect: 22286285962.927628
[2025-10-13 14:43:44] 2025-10-13 12:43:01,356 | INFO     | chi2: 0.951426895857288
[2025-10-13 14:43:44] 2025-10-13 12:43:01,356 | INFO     | current chi2=0.951426895857288 (change=1.2543680252244505 %)
[2025-10-13 14:43:44] 2025-10-13 12:43:01,356 | INFO     | left removable region: 20
[2025-10-13 14:43:44] 2025-10-13 12:43:01,356 | INFO     | sum of square deviations: 2593916542.0
[2025-10-13 14:43:44] 2025-10-13 12:43:01,358 | INFO     | sum of deviations: -13732590413.000002
[2025-10-13 14:43:44] 2025-10-13 12:43:01,358 | INFO     | mean x: 1760352422.0
[2025-10-13 14:43:44] 2025-10-13 12:43:01,358 | INFO     | mean y: 2509467.2561576352
[2025-10-13 14:43:44] 2025-10-13 12:43:01,358 | INFO     | -- intersect: 9322084095.98318
[2025-10-13 14:43:44] 2025-10-13 12:43:01,358 | INFO     | intersect: 9322084095.98318
[2025-10-13 14:43:44] 2025-10-13 12:43:01,359 | INFO     | chi2: 0.11582014647711948
[2025-10-13 14:43:44] 2025-10-13 12:43:01,359 | INFO     | -- intersect: 9322084095.98318
[2025-10-13 14:43:44] 2025-10-13 12:43:01,359 | INFO     | current memory leak: -5.29 B/s (using 203 data points, chi2=0.12)
[2025-10-13 14:43:44] 2025-10-13 12:43:01,360 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-13 14:43:44] 2025-10-13 12:43:01,360 | INFO     | ..............................
[2025-10-13 14:43:44] 2025-10-13 12:43:01,360 | INFO     | . Timing measurements:
[2025-10-13 14:43:44] 2025-10-13 12:43:01,360 | INFO     | . get job = 0 s
[2025-10-13 14:43:44] 2025-10-13 12:43:01,360 | INFO     | . initial setup = 7 s
[2025-10-13 14:43:44] 2025-10-13 12:43:01,360 | INFO     | . payload setup = 123 s
[2025-10-13 14:43:44] 2025-10-13 12:43:01,361 | INFO     | . stage-in = 0 s
[2025-10-13 14:43:44] 2025-10-13 12:43:01,361 | INFO     | . payload execution = 14282 s
[2025-10-13 14:43:44] 2025-10-13 12:43:01,361 | INFO     | . stage-out = 3 s
[2025-10-13 14:43:44] 2025-10-13 12:43:01,361 | INFO     | . log creation = 1 s
[2025-10-13 14:43:44] 2025-10-13 12:43:01,361 | INFO     | ..............................
[2025-10-13 14:43:44] 2025-10-13 12:43:01,487 | INFO     | 
[2025-10-13 14:43:44] 2025-10-13 12:43:01,488 | INFO     | job summary report
[2025-10-13 14:43:44] 2025-10-13 12:43:01,488 | INFO     | --------------------------------------------------
[2025-10-13 14:43:44] 2025-10-13 12:43:01,488 | INFO     | PanDA job id: 6840430332
[2025-10-13 14:43:44] 2025-10-13 12:43:01,488 | INFO     | task id: 46676269
[2025-10-13 14:43:44] 2025-10-13 12:43:01,488 | INFO     | errors: (none)
[2025-10-13 14:43:44] 2025-10-13 12:43:01,488 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 14:43:44] 2025-10-13 12:43:01,488 | INFO     | pilot state: finished 
[2025-10-13 14:43:44] 2025-10-13 12:43:01,488 | INFO     | transexitcode: 0
[2025-10-13 14:43:44] 2025-10-13 12:43:01,488 | INFO     | exeerrorcode: 0
[2025-10-13 14:43:44] 2025-10-13 12:43:01,488 | INFO     | exeerrordiag: 
[2025-10-13 14:43:44] 2025-10-13 12:43:01,488 | INFO     | exitcode: 0
[2025-10-13 14:43:44] 2025-10-13 12:43:01,489 | INFO     | exitmsg: OK
[2025-10-13 14:43:44] 2025-10-13 12:43:01,489 | INFO     | cpuconsumptiontime: 54781 s
[2025-10-13 14:43:44] 2025-10-13 12:43:01,489 | INFO     | nevents: 400
[2025-10-13 14:43:44] 2025-10-13 12:43:01,489 | INFO     | neventsw: 0
[2025-10-13 14:43:44] 2025-10-13 12:43:01,489 | INFO     | pid: 11990
[2025-10-13 14:43:44] 2025-10-13 12:43:01,489 | INFO     | pgrp: 11990
[2025-10-13 14:43:44] 2025-10-13 12:43:01,489 | INFO     | corecount: 8
[2025-10-13 14:43:44] 2025-10-13 12:43:01,489 | INFO     | event service: False
[2025-10-13 14:43:44] 2025-10-13 12:43:01,489 | INFO     | sizes: {0: 2348630, 1: 2348885, 2: 2348885, 12: 2348913, 23: 2348941, 34: 2348969, 44: 2349125, 55: 2349153, 66: 2349181, 77: 2349209, 87: 2349265, 89: 2349835, 98
[2025-10-13 14:43:44] 2025-10-13 12:43:01,489 | INFO     | --------------------------------------------------
[2025-10-13 14:43:44] 2025-10-13 12:43:01,490 | INFO     | 
[2025-10-13 14:43:44] 2025-10-13 12:43:01,490 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-10-13 14:43:44] 2025-10-13 12:43:01,586 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,587 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,587 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,587 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,587 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,587 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,587 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,588 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,588 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,588 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,588 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,588 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,588 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,588 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,588 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,588 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,588 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,589 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 14:43:44] 2025-10-13 12:43:01,589 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,589 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 14:43:44] 2025-10-13 12:43:01,589 | INFO     | job 6840430332 has completed (purged errors)
[2025-10-13 14:43:44] 2025-10-13 12:43:01,589 | INFO     | overall cleanup function is called
[2025-10-13 14:43:44] 2025-10-13 12:43:02,597 | INFO     | --- collectZombieJob: --- 10, [11990]
[2025-10-13 14:43:44] 2025-10-13 12:43:02,597 | INFO     | zombie collector waiting for pid 11990
[2025-10-13 14:43:44] 2025-10-13 12:43:02,598 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 14:43:44] 2025-10-13 12:43:02,598 | INFO     | collected zombie processes
[2025-10-13 14:43:44] 2025-10-13 12:43:02,598 | INFO     | will attempt to kill all subprocesses of pid=11990
[2025-10-13 14:43:44] 2025-10-13 12:43:02,710 | INFO     | process IDs to be killed: [11990] (in reverse order)
[2025-10-13 14:43:44] 2025-10-13 12:43:03,399 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 14:43:44] 2025-10-13 12:43:03,399 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 14:43:44] 2025-10-13 12:43:03,402 | INFO     | did not find any defunct processes belonging to 11990
[2025-10-13 14:43:44] 2025-10-13 12:43:03,405 | INFO     | did not find any defunct processes belonging to 11990
[2025-10-13 14:43:44] 2025-10-13 12:43:03,406 | INFO     | ready for new job
[2025-10-13 14:43:44] 2025-10-13 12:43:03,406 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 14:43:44] 2025-10-13 12:43:03,408 | INFO     | ***************************************
[2025-10-13 14:43:44] 2025-10-13 12:43:03,408 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 14:43:44] 2025-10-13 12:43:03,409 | INFO     | ***************************************
[2025-10-13 14:43:44] 2025-10-13 12:43:03,409 | INFO     | 
[2025-10-13 14:43:44] 2025-10-13 12:43:03,409 | INFO     | pilot is running in a VM
[2025-10-13 14:43:44] 2025-10-13 12:43:03,409 | INFO     | architecture information:
[2025-10-13 14:43:44] 2025-10-13 12:43:03,421 | INFO     | executing command: cat /etc/os-release
[2025-10-13 14:43:44] 2025-10-13 12:43:03,732 | INFO     | cat /etc/os-release:
[2025-10-13 14:43:44] NAME="CentOS Linux"
[2025-10-13 14:43:44] VERSION="7 (Core)"
[2025-10-13 14:43:44] ID="centos"
[2025-10-13 14:43:44] ID_LIKE="rhel fedora"
[2025-10-13 14:43:44] VERSION_ID="7"
[2025-10-13 14:43:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 14:43:44] ANSI_COLOR="0;31"
[2025-10-13 14:43:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 14:43:44] HOME_URL="https://www.centos.org/"
[2025-10-13 14:43:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 14:43:44] 
[2025-10-13 14:43:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 14:43:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 14:43:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 14:43:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 14:43:44] 
[2025-10-13 14:43:44] 2025-10-13 12:43:03,732 | INFO     | ***************************************
[2025-10-13 14:43:44] 2025-10-13 12:43:04,235 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-10-13 14:43:44] 2025-10-13 12:43:04,528 | INFO     | sufficient remaining disk space (496001613824 B)
[2025-10-13 14:43:44] 2025-10-13 12:43:04,528 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 14:43:44] 2025-10-13 12:43:04,528 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 14:43:44] 2025-10-13 12:43:04,528 | INFO     | update_server=False
[2025-10-13 14:43:44] 2025-10-13 12:43:04,528 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 14:43:44] 2025-10-13 12:43:04,530 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:43:44] 2025-10-13 12:43:04,531 | INFO     | aborting loop
[2025-10-13 14:43:44] 2025-10-13 12:43:04,545 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 14:43:44] 2025-10-13 12:43:04,638 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 14:43:44] 2025-10-13 12:43:04,945 | INFO     | all job control threads have been joined
[2025-10-13 14:43:44] 2025-10-13 12:43:05,051 | INFO     | all data control threads have been joined
[2025-10-13 14:43:44] 2025-10-13 12:43:05,534 | INFO     | [job] retrieve thread has finished
[2025-10-13 14:43:44] 2025-10-13 12:43:05,536 | INFO     | [job] job monitor thread has finished
[2025-10-13 14:43:44] 2025-10-13 12:43:05,616 | INFO     | [payload] failed_post thread has finished
[2025-10-13 14:43:44] 2025-10-13 12:43:05,815 | INFO     | [data] copytool_in thread has finished
[2025-10-13 14:43:44] 2025-10-13 12:43:05,864 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 14:43:44] 2025-10-13 12:43:05,951 | INFO     | [job] control thread has finished
[2025-10-13 14:43:44] 2025-10-13 12:43:06,023 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 14:43:44] 2025-10-13 12:43:06,034 | INFO     | all payload control threads have been joined
[2025-10-13 14:43:44] 2025-10-13 12:43:06,057 | INFO     | [data] control thread has finished
[2025-10-13 14:43:44] 2025-10-13 12:43:06,364 | INFO     | [payload] validate_post thread has finished
[2025-10-13 14:43:44] 2025-10-13 12:43:06,393 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 14:43:44] 2025-10-13 12:43:06,394 | INFO     | [job] validate thread has finished
[2025-10-13 14:43:44] 2025-10-13 12:43:06,461 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 14:43:44] 2025-10-13 12:43:06,508 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:43:44] 2025-10-13 12:43:06,645 | INFO     | [data] copytool_out thread has finished
[2025-10-13 14:43:44] 2025-10-13 12:43:07,040 | INFO     | [payload] control thread has finished
[2025-10-13 14:43:44] 2025-10-13 12:43:07,514 | INFO     | [job] queue monitor thread has finished
[2025-10-13 14:43:44] 2025-10-13 12:43:08,554 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 14:43:44] 2025-10-13 12:43:33,780 | INFO     | [monitor] cgroup control has ended
[2025-10-13 14:43:44] 2025-10-13 12:43:33,810 | INFO     | PID=5382 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 14:43:44] 2025-10-13 12:43:33,811 | INFO     | .. there are 9 such processes running
[2025-10-13 14:43:44] 2025-10-13 12:43:33,811 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 14:43:44] 2025-10-13 12:43:33,811 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 14:43:44] 2025-10-13 12:43:33,811 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 14:43:44] 2025-10-13 12:43:34,787 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139939147052864)>', '<ExcThread(monitor, started 139938406323968)>']
[2025-10-13 14:43:44] 2025-10-13 12:43:34,817 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 14:43:44] 2025-10-13 12:43:34,817 | INFO     | [monitor] control thread has ended
[2025-10-13 14:43:44] 2025-10-13 12:43:39,813 | INFO     | all workflow threads have been joined
[2025-10-13 14:43:44] 2025-10-13 12:43:39,813 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 14:43:44] 2025-10-13 12:43:39,814 | INFO     | traces error code: 0
[2025-10-13 14:43:44] 2025-10-13 12:43:39,814 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 14:43:44] 2025-10-13 12:43:40,291 [wrapper] ==== pilot stdout END ====
[2025-10-13 14:43:44] 2025-10-13 12:43:40,391 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 14:43:44] 2025-10-13 12:43:40,468 [wrapper] pilotpid: 5382
[2025-10-13 14:43:44] 2025-10-13 12:43:40,545 [wrapper] Pilot exit status: 0
[2025-10-13 14:43:44] 2025-10-13 12:43:40,977 [wrapper] pandaids: 6840430332
[2025-10-13 14:43:44] 2025-10-13 12:43:41,886 [wrapper] cleanup supervisor_pilot 21460 5383
[2025-10-13 14:43:44] 2025-10-13 12:43:41,955 [wrapper] Test setup, not cleaning
[2025-10-13 14:43:44] 2025-10-13 12:43:42,093 [wrapper] apfmon messages muted
[2025-10-13 14:43:44] 2025-10-13 12:43:42,161 [wrapper] ==== wrapper stdout END ====
[2025-10-13 14:43:44] 2025-10-13 12:43:42,265 [wrapper] ==== wrapper stderr END ====
[2025-10-13 14:43:44]  *** Error codes and diagnostics ***
[2025-10-13 14:43:44]     "exeErrorCode": 0,
[2025-10-13 14:43:44]     "exeErrorDiag": "",
[2025-10-13 14:43:44]     "pilotErrorCode": 0,
[2025-10-13 14:43:44]     "pilotErrorDiag": "",
[2025-10-13 14:43:44]  *** Listing of results directory ***
[2025-10-13 14:43:44] total 408164
[2025-10-13 14:43:44] -rw-r--r--. 1 boinc boinc    557409 Oct 12 19:32 pilot3.tar.gz
[2025-10-13 14:43:44] -rwx------. 1 boinc boinc     36292 Oct 12 19:52 runpilot2-wrapper.sh
[2025-10-13 14:43:44] -rw-r--r--. 1 boinc boinc      5112 Oct 12 19:52 queuedata.json
[2025-10-13 14:43:44] -rw-r--r--. 1 boinc boinc       100 Oct 13 10:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 14:43:44] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 10:34 run_atlas
[2025-10-13 14:43:44] -rw-r--r--. 1 boinc boinc       105 Oct 13 10:34 job.xml
[2025-10-13 14:43:44] -rw-r--r--. 1 boinc boinc      6389 Oct 13 10:34 init_data.xml
[2025-10-13 14:43:44] -rw-r--r--. 2 boinc boinc 219562347 Oct 13 10:34 EVNT.46676267._003659.pool.root.1
[2025-10-13 14:43:44] -rw-r--r--. 2 boinc boinc     15120 Oct 13 10:34 start_atlas.sh
[2025-10-13 14:43:44] drwxrwx--x. 2 boinc boinc        68 Oct 13 10:34 shared
[2025-10-13 14:43:44] -rw-r--r--. 2 boinc boinc    569679 Oct 13 10:34 input.tar.gz
[2025-10-13 14:43:44] -rw-r--r--. 1 boinc boinc         0 Oct 13 10:34 boinc_lockfile
[2025-10-13 14:43:44] -rw-r--r--. 1 boinc boinc      2550 Oct 13 10:34 pandaJob.out
[2025-10-13 14:43:44] -rw-------. 1 boinc boinc    972857 Oct 13 10:38 agis_schedconf.cvmfs.json
[2025-10-13 14:43:44] drwx------. 5 boinc boinc      4096 Oct 13 10:38 pilot3
[2025-10-13 14:43:44] -rw-------. 1 boinc boinc 189638174 Oct 13 14:40 HITS.46676269._085288.pool.root.1
[2025-10-13 14:43:44] -rw-r--r--. 1 boinc boinc       531 Oct 13 14:40 boinc_task_state.xml
[2025-10-13 14:43:44] -rw-------. 1 boinc boinc      1015 Oct 13 14:41 memory_monitor_summary.json
[2025-10-13 14:43:44] -rw-------. 1 boinc boinc   1560580 Oct 13 14:41 agis_ddmendpoints.agis.ALL.json
[2025-10-13 14:43:44] -rw-------. 1 boinc boinc    465057 Oct 13 14:41 log.46676269._085288.job.log.tgz.1
[2025-10-13 14:43:44] -rw-------. 1 boinc boinc        95 Oct 13 14:42 pilot_heartbeat.json
[2025-10-13 14:43:44] -rw-------. 1 boinc boinc      7775 Oct 13 14:43 heartbeat.json
[2025-10-13 14:43:44] -rw-r--r--. 1 boinc boinc      8192 Oct 13 14:43 boinc_mmap_file
[2025-10-13 14:43:44] -rw-r--r--. 1 boinc boinc        28 Oct 13 14:43 wrapper_checkpoint.txt
[2025-10-13 14:43:44] -rw-------. 1 boinc boinc      4883 Oct 13 14:43 pilotlog.txt
[2025-10-13 14:43:44] -rw-------. 1 boinc boinc   1968181 Oct 13 14:43 log.46676269._085288.job.log.1
[2025-10-13 14:43:44] -rw-------. 1 boinc boinc       357 Oct 13 14:43 output.list
[2025-10-13 14:43:44] -rw-r--r--. 1 boinc boinc       620 Oct 13 14:43 runtime_log
[2025-10-13 14:43:44] -rw-------. 1 boinc boinc   2457600 Oct 13 14:43 result.tar.gz
[2025-10-13 14:43:44] -rw-r--r--. 1 boinc boinc      8703 Oct 13 14:43 runtime_log.err
[2025-10-13 14:43:44] -rw-------. 1 boinc boinc       656 Oct 13 14:43 RkXNDmAQFS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmYbUMDmJ7juEo.diag
[2025-10-13 14:43:44] -rw-r--r--. 1 boinc boinc     20618 Oct 13 14:43 stderr.txt
[2025-10-13 14:43:45] HITS file was successfully produced:
[2025-10-13 14:43:45] -rw-------. 1 boinc boinc 189638174 Oct 13 14:40 shared/HITS.pool.root.1
[2025-10-13 14:43:45]  *** Contents of shared directory: ***
[2025-10-13 14:43:45] total 402592
[2025-10-13 14:43:45] -rw-r--r--. 2 boinc boinc 219562347 Oct 13 10:34 ATLAS.root_0
[2025-10-13 14:43:45] -rw-r--r--. 2 boinc boinc     15120 Oct 13 10:34 start_atlas.sh
[2025-10-13 14:43:45] -rw-r--r--. 2 boinc boinc    569679 Oct 13 10:34 input.tar.gz
[2025-10-13 14:43:45] -rw-------. 1 boinc boinc 189638174 Oct 13 14:40 HITS.pool.root.1
[2025-10-13 14:43:45] -rw-------. 1 boinc boinc   2457600 Oct 13 14:43 result.tar.gz
14:43:47 (1601): run_atlas exited; CPU time 54969.542369
14:43:47 (1601): called boinc_finish(0)

</stderr_txt>
]]>

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