Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:58:41 (2346450): wrapper (7.7.26015): starting
10:58:41 (2346450): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 10:58:41] Arguments: --nthreads 4
[2025-10-13 10:58:41] Threads: 4
[2025-10-13 10:58:41] Checking for CVMFS
[2025-10-13 10:58:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 10:58:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 10:58:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 10:58:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 10:58:42] 2.9.2.0 287733 5604 98800 151654 1 57 22521025 36864001 0 130560 0 5373624 99.993 188440 883 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 10:58:42] CVMFS is ok
[2025-10-13 10:58:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 10:58:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 10:58:42] Further information can be found at the LHC@home message board.
[2025-10-13 10:58:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 10:58:42] Checking for apptainer binary...
[2025-10-13 10:58:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 10:58:42] Running /usr/bin/apptainer --version
[2025-10-13 10:58:42] apptainer version 1.4.1-1.1
[2025-10-13 10:58:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 10:58:42] thA373a
[2025-10-13 10:58:42] apptainer works
[2025-10-13 10:58:42] Set ATHENA_PROC_NUMBER=4
[2025-10-13 10:58:42] Set ATHENA_CORE_NUMBER=4
[2025-10-13 10:58:42] Starting ATLAS job with PandaID=6840429919
[2025-10-13 10:58:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 12:11:01]  *** The last 200 lines of the pilot log: ***
[2025-10-13 12:11:01] 2025-10-13 10:10:23,011 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 12:11:01] 2025-10-13 10:10:23,011 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 12:11:01] 2025-10-13 10:10:23,011 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 12:11:01] 2025-10-13 10:10:23,011 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 12:11:01] 2025-10-13 10:10:23,011 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 12:11:01] 2025-10-13 10:10:23,011 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 12:11:01] 2025-10-13 10:10:23,011 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 12:11:01] 2025-10-13 10:10:23,011 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 12:11:01] 2025-10-13 10:10:23,011 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 12:11:01] 2025-10-13 10:10:23,011 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 12:11:01] 2025-10-13 10:10:23,011 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 12:11:01] 2025-10-13 10:10:23,011 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 12:11:01] 2025-10-13 10:10:23,011 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 12:11:01] 2025-10-13 10:10:23,011 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 12:11:01] 2025-10-13 10:10:23,012 | INFO     | job 6840429919 has completed (purged errors)
[2025-10-13 12:11:01] 2025-10-13 10:10:23,012 | INFO     | overall cleanup function is called
[2025-10-13 12:11:01] 2025-10-13 10:10:24,018 | INFO     | --- collectZombieJob: --- 10, [2356829]
[2025-10-13 12:11:01] 2025-10-13 10:10:24,018 | INFO     | zombie collector waiting for pid 2356829
[2025-10-13 12:11:01] 2025-10-13 10:10:24,019 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 12:11:01] 2025-10-13 10:10:24,019 | INFO     | collected zombie processes
[2025-10-13 12:11:01] 2025-10-13 10:10:24,019 | INFO     | will attempt to kill all subprocesses of pid=2356829
[2025-10-13 12:11:01] 2025-10-13 10:10:24,064 | INFO     | process IDs to be killed: [2356829] (in reverse order)
[2025-10-13 12:11:01] 2025-10-13 10:10:24,097 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 12:11:01] 2025-10-13 10:10:24,098 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 12:11:01] 2025-10-13 10:10:24,099 | INFO     | did not find any defunct processes belonging to 2356829
[2025-10-13 12:11:01] 2025-10-13 10:10:24,101 | INFO     | did not find any defunct processes belonging to 2356829
[2025-10-13 12:11:01] 2025-10-13 10:10:24,101 | INFO     | ready for new job
[2025-10-13 12:11:01] 2025-10-13 10:10:24,101 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 12:11:01] 2025-10-13 10:10:24,101 | INFO     | ***************************************
[2025-10-13 12:11:01] 2025-10-13 10:10:24,102 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 12:11:01] 2025-10-13 10:10:24,102 | INFO     | ***************************************
[2025-10-13 12:11:01] 2025-10-13 10:10:24,102 | INFO     | 
[2025-10-13 12:11:01] 2025-10-13 10:10:24,102 | INFO     | architecture information:
[2025-10-13 12:11:01] 2025-10-13 10:10:24,102 | INFO     | executing command: cat /etc/os-release
[2025-10-13 12:11:01] 2025-10-13 10:10:24,116 | INFO     | cat /etc/os-release:
[2025-10-13 12:11:01] NAME="CentOS Linux"
[2025-10-13 12:11:01] VERSION="7 (Core)"
[2025-10-13 12:11:01] ID="centos"
[2025-10-13 12:11:01] ID_LIKE="rhel fedora"
[2025-10-13 12:11:01] VERSION_ID="7"
[2025-10-13 12:11:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 12:11:01] ANSI_COLOR="0;31"
[2025-10-13 12:11:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 12:11:01] HOME_URL="https://www.centos.org/"
[2025-10-13 12:11:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 12:11:01] 
[2025-10-13 12:11:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 12:11:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 12:11:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 12:11:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 12:11:01] 
[2025-10-13 12:11:01] 2025-10-13 10:10:24,117 | INFO     | ***************************************
[2025-10-13 12:11:01] 2025-10-13 10:10:24,617 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 12:11:01] 2025-10-13 10:10:24,636 | INFO     | sufficient remaining disk space (337454825472 B)
[2025-10-13 12:11:01] 2025-10-13 10:10:24,636 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 12:11:01] 2025-10-13 10:10:24,636 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 12:11:01] 2025-10-13 10:10:24,636 | INFO     | update_server=False
[2025-10-13 12:11:01] 2025-10-13 10:10:24,636 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 12:11:01] 2025-10-13 10:10:24,636 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 12:11:01] 2025-10-13 10:10:24,636 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:11:01] 2025-10-13 10:10:24,895 | INFO     | all data control threads have been joined
[2025-10-13 12:11:01] 2025-10-13 10:10:25,253 | INFO     | all payload control threads have been joined
[2025-10-13 12:11:01] 2025-10-13 10:10:25,326 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 12:11:01] 2025-10-13 10:10:25,331 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:11:01] 2025-10-13 10:10:25,331 | INFO     | aborting loop
[2025-10-13 12:11:01] 2025-10-13 10:10:25,556 | INFO     | all job control threads have been joined
[2025-10-13 12:11:01] 2025-10-13 10:10:25,642 | INFO     | [job] retrieve thread has finished
[2025-10-13 12:11:01] 2025-10-13 10:10:25,642 | INFO     | [job] queue monitor thread has finished
[2025-10-13 12:11:01] 2025-10-13 10:10:25,706 | INFO     | [payload] validate_post thread has finished
[2025-10-13 12:11:01] 2025-10-13 10:10:25,901 | INFO     | [data] control thread has finished
[2025-10-13 12:11:01] 2025-10-13 10:10:25,906 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 12:11:01] 2025-10-13 10:10:25,910 | INFO     | [payload] failed_post thread has finished
[2025-10-13 12:11:01] 2025-10-13 10:10:26,149 | INFO     | [job] validate thread has finished
[2025-10-13 12:11:01] 2025-10-13 10:10:26,259 | INFO     | [payload] control thread has finished
[2025-10-13 12:11:01] 2025-10-13 10:10:26,269 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 12:11:01] 2025-10-13 10:10:26,337 | INFO     | [job] job monitor thread has finished
[2025-10-13 12:11:01] 2025-10-13 10:10:26,340 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 12:11:01] 2025-10-13 10:10:26,562 | INFO     | [job] control thread has finished
[2025-10-13 12:11:01] 2025-10-13 10:10:26,576 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 12:11:01] 2025-10-13 10:10:26,642 | INFO     | [data] copytool_out thread has finished
[2025-10-13 12:11:01] 2025-10-13 10:10:26,834 | INFO     | [data] copytool_in thread has finished
[2025-10-13 12:11:01] 2025-10-13 10:10:29,333 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 12:11:01] 2025-10-13 10:10:55,019 | INFO     | [monitor] cgroup control has ended
[2025-10-13 12:11:01] 2025-10-13 10:10:55,295 | INFO     | PID=2350234 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 12:11:01] 2025-10-13 10:10:55,296 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 12:11:01] 2025-10-13 10:10:55,296 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 12:11:01] 2025-10-13 10:10:55,296 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 12:11:01] 2025-10-13 10:10:55,857 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140424732550976)>', '<ExcThread(monitor, started 140423980885760)>']
[2025-10-13 12:11:01] 2025-10-13 10:10:56,301 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 12:11:01] 2025-10-13 10:10:56,301 | INFO     | [monitor] control thread has ended
[2025-10-13 12:11:01] 2025-10-13 10:11:00,883 | INFO     | all workflow threads have been joined
[2025-10-13 12:11:01] 2025-10-13 10:11:00,883 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 12:11:01] 2025-10-13 10:11:00,883 | INFO     | traces error code: 0
[2025-10-13 12:11:01] 2025-10-13 10:11:00,883 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 12:11:01] 2025-10-13 10:11:00,965 [wrapper] ==== pilot stdout END ====
[2025-10-13 12:11:01] 2025-10-13 10:11:00,969 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 12:11:01] 2025-10-13 10:11:00,973 [wrapper] pilotpid: 2350234
[2025-10-13 12:11:01] 2025-10-13 10:11:00,977 [wrapper] Pilot exit status: 0
[2025-10-13 12:11:01] 2025-10-13 10:11:00,988 [wrapper] pandaids: 6840429919
[2025-10-13 12:11:01] 2025-10-13 10:11:01,011 [wrapper] cleanup supervisor_pilot 2366424 2350235
[2025-10-13 12:11:01] 2025-10-13 10:11:01,015 [wrapper] Test setup, not cleaning
[2025-10-13 12:11:01] 2025-10-13 10:11:01,018 [wrapper] apfmon messages muted
[2025-10-13 12:11:01] 2025-10-13 10:11:01,022 [wrapper] ==== wrapper stdout END ====
[2025-10-13 12:11:01] 2025-10-13 10:11:01,026 [wrapper] ==== wrapper stderr END ====
[2025-10-13 12:11:01]  *** Error codes and diagnostics ***
[2025-10-13 12:11:01]     "exeErrorCode": 0,
[2025-10-13 12:11:01]     "exeErrorDiag": "",
[2025-10-13 12:11:01]     "pilotErrorCode": 0,
[2025-10-13 12:11:01]     "pilotErrorDiag": "",
[2025-10-13 12:11:01]  *** Listing of results directory ***
[2025-10-13 12:11:01] total 418872
[2025-10-13 12:11:01] -rw-r--r-- 1 boinc boinc    557409 Oct 12 19:32 pilot3.tar.gz
[2025-10-13 12:11:01] -rwx------ 1 boinc boinc     36292 Oct 12 19:38 runpilot2-wrapper.sh
[2025-10-13 12:11:01] -rw-r--r-- 1 boinc boinc      5112 Oct 12 19:38 queuedata.json
[2025-10-13 12:11:01] -rw-r--r-- 1 boinc boinc       100 Oct 13 10:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 12:11:01] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 10:58 run_atlas
[2025-10-13 12:11:01] -rw-r--r-- 1 boinc boinc       105 Oct 13 10:58 job.xml
[2025-10-13 12:11:01] -rw-r--r-- 2 boinc boinc 224567397 Oct 13 10:58 EVNT.46676267._002414.pool.root.1
[2025-10-13 12:11:01] -rw-r--r-- 2 boinc boinc    569678 Oct 13 10:58 input.tar.gz
[2025-10-13 12:11:01] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:58 start_atlas.sh
[2025-10-13 12:11:01] drwxrwx--x 2 boinc boinc      4096 Oct 13 10:58 shared
[2025-10-13 12:11:01] -rw-r--r-- 1 boinc boinc         0 Oct 13 10:58 boinc_setup_complete
[2025-10-13 12:11:01] -rw-r--r-- 1 boinc boinc      6376 Oct 13 10:58 init_data.xml
[2025-10-13 12:11:01] -rw-r--r-- 1 boinc boinc         0 Oct 13 10:58 boinc_lockfile
[2025-10-13 12:11:01] -rw-r--r-- 1 boinc boinc      2550 Oct 13 10:58 pandaJob.out
[2025-10-13 12:11:01] -rw------- 1 boinc boinc    972857 Oct 13 10:58 agis_schedconf.cvmfs.json
[2025-10-13 12:11:01] -rw------- 1 boinc boinc   1560580 Oct 13 10:58 agis_ddmendpoints.agis.ALL.json
[2025-10-13 12:11:01] drwx------ 5 boinc boinc      4096 Oct 13 10:58 pilot3
[2025-10-13 12:11:01] -rw------- 1 boinc boinc 198679891 Oct 13 12:09 HITS.46676269._085032.pool.root.1
[2025-10-13 12:11:01] -rw-r--r-- 1 boinc boinc       530 Oct 13 12:09 boinc_task_state.xml
[2025-10-13 12:11:01] -rw------- 1 boinc boinc      1019 Oct 13 12:10 memory_monitor_summary.json
[2025-10-13 12:11:01] -rw------- 1 boinc boinc        95 Oct 13 12:10 pilot_heartbeat.json
[2025-10-13 12:11:01] -rw------- 1 boinc boinc    257937 Oct 13 12:10 log.46676269._085032.job.log.tgz.1
[2025-10-13 12:11:01] -rw------- 1 boinc boinc      7759 Oct 13 12:10 heartbeat.json
[2025-10-13 12:11:01] -rw-r--r-- 1 boinc boinc      8192 Oct 13 12:10 boinc_mmap_file
[2025-10-13 12:11:01] -rw-r--r-- 1 boinc boinc        27 Oct 13 12:10 wrapper_checkpoint.txt
[2025-10-13 12:11:01] -rw------- 1 boinc boinc      4752 Oct 13 12:11 pilotlog.txt
[2025-10-13 12:11:01] -rw------- 1 boinc boinc    637772 Oct 13 12:11 log.46676269._085032.job.log.1
[2025-10-13 12:11:01] -rw------- 1 boinc boinc       357 Oct 13 12:11 output.list
[2025-10-13 12:11:01] -rw-r--r-- 1 boinc boinc       620 Oct 13 12:11 runtime_log
[2025-10-13 12:11:01] -rw------- 1 boinc boinc    911360 Oct 13 12:11 result.tar.gz
[2025-10-13 12:11:01] -rw-r--r-- 1 boinc boinc      8782 Oct 13 12:11 runtime_log.err
[2025-10-13 12:11:01] -rw------- 1 boinc boinc       659 Oct 13 12:11 T5AODmKCFS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5tkNDmJhGTnn.diag
[2025-10-13 12:11:01] -rw-r--r-- 1 boinc boinc     12246 Oct 13 12:11 stderr.txt
[2025-10-13 12:11:01] HITS file was successfully produced:
[2025-10-13 12:11:01] -rw------- 1 boinc boinc 198679891 Oct 13 12:09 shared/HITS.pool.root.1
[2025-10-13 12:11:01]  *** Contents of shared directory: ***
[2025-10-13 12:11:01] total 414808
[2025-10-13 12:11:01] -rw-r--r-- 2 boinc boinc 224567397 Oct 13 10:58 ATLAS.root_0
[2025-10-13 12:11:01] -rw-r--r-- 2 boinc boinc    569678 Oct 13 10:58 input.tar.gz
[2025-10-13 12:11:01] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:58 start_atlas.sh
[2025-10-13 12:11:01] -rw------- 1 boinc boinc 198679891 Oct 13 12:09 HITS.pool.root.1
[2025-10-13 12:11:01] -rw------- 1 boinc boinc    911360 Oct 13 12:11 result.tar.gz
12:11:02 (2346450): run_atlas exited; CPU time 16146.697399
12:11:02 (2346450): called boinc_finish(0)

</stderr_txt>
]]>

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