Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:37:29 (3798048): wrapper (7.7.26015): starting
19:37:29 (3798048): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 19:37:29] Arguments: --nthreads 8
[2025-10-12 19:37:29] Threads: 8
[2025-10-12 19:37:29] Checking for CVMFS
[2025-10-12 19:37:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:37:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:37:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:37:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:37:31] 2.13.2.0 3310087 19341 224664 151641 1 65 26746331 40960000 12135 16776704 0 41351983 99.797 20738036 36939 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 19:37:31] CVMFS is ok
[2025-10-12 19:37:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:37:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:37:31] Further information can be found at the LHC@home message board.
[2025-10-12 19:37:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:37:31] Checking for apptainer binary...
[2025-10-12 19:37:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:37:31] Running /usr/bin/apptainer --version
[2025-10-12 19:37:31] apptainer version 1.4.3-1.el9
[2025-10-12 19:37:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:37:32] c-206-38.aglt2.org
[2025-10-12 19:37:32] apptainer works
[2025-10-12 19:37:32] Set ATHENA_PROC_NUMBER=8
[2025-10-12 19:37:32] Set ATHENA_CORE_NUMBER=8
[2025-10-12 19:37:32] Starting ATLAS job with PandaID=6840537520
[2025-10-12 19:37:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:53:22]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:53:22] 2025-10-13 01:52:47,390 | INFO     | PID=3803220 has CPU usage=10.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 21:53:22] 2025-10-13 01:52:47,390 | INFO     | .. there are 11 such processes running
[2025-10-12 21:53:22] 2025-10-13 01:52:48,393 | INFO     | time since job start (8048s) is within the limit (172800.0s)
[2025-10-12 21:53:22] 2025-10-13 01:52:48,524 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 21:53:22] 2025-10-13 01:52:48,528 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3273.4889843749993
[2025-10-12 21:53:22] 2025-10-13 01:52:48,537 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6840537520/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:53:22] 2025-10-13 01:52:48,537 | INFO     | extracted standard info from prmon json
[2025-10-12 21:53:22] 2025-10-13 01:52:48,537 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:53:22] 2025-10-13 01:52:48,537 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:53:22] 2025-10-13 01:52:48,538 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:53:22] 2025-10-13 01:52:48,538 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:53:22] 2025-10-13 01:52:48,540 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:53:22] 2025-10-13 01:52:48,540 | INFO     | sum of square deviations: 681216077.3923067
[2025-10-12 21:53:22] 2025-10-13 01:52:48,540 | INFO     | sum of deviations: -4778731543.699998
[2025-10-12 21:53:22] 2025-10-13 01:52:48,541 | INFO     | mean x: 1760316389.5923078
[2025-10-12 21:53:22] 2025-10-13 01:52:48,541 | INFO     | mean y: 2570638.1
[2025-10-12 21:53:22] 2025-10-13 01:52:48,541 | INFO     | -- intersect: 12351192077.039425
[2025-10-12 21:53:22] 2025-10-13 01:52:48,541 | INFO     | intersect: 12351192077.039425
[2025-10-12 21:53:22] 2025-10-13 01:52:48,541 | INFO     | chi2: 2.3877044055936896
[2025-10-12 21:53:22] 2025-10-13 01:52:48,541 | INFO     | sum of square deviations: 605599714.8480012
[2025-10-12 21:53:22] 2025-10-13 01:52:48,541 | INFO     | sum of deviations: -3994891355.5439973
[2025-10-12 21:53:22] 2025-10-13 01:52:48,541 | INFO     | mean x: 1760316237.096
[2025-10-12 21:53:22] 2025-10-13 01:52:48,541 | INFO     | mean y: 2572215.712
[2025-10-12 21:53:22] 2025-10-13 01:52:48,542 | INFO     | -- intersect: 11614651855.418516
[2025-10-12 21:53:22] 2025-10-13 01:52:48,542 | INFO     | intersect: 11614651855.418516
[2025-10-12 21:53:22] 2025-10-13 01:52:48,542 | INFO     | chi2: 2.389274233100861
[2025-10-12 21:53:22] 2025-10-13 01:52:48,542 | INFO     | current chi2=2.389274233100861 (change=-0.06574630860897025 %)
[2025-10-12 21:53:22] 2025-10-13 01:52:48,542 | INFO     | right removable region: 124
[2025-10-12 21:53:22] 2025-10-13 01:52:48,542 | INFO     | sum of square deviations: 605592394.8480012
[2025-10-12 21:53:22] 2025-10-13 01:52:48,542 | INFO     | sum of deviations: -31183116365.48801
[2025-10-12 21:53:22] 2025-10-13 01:52:48,542 | INFO     | mean x: 1760316542.096
[2025-10-12 21:53:22] 2025-10-13 01:52:48,542 | INFO     | mean y: 2623169.624
[2025-10-12 21:53:22] 2025-10-13 01:52:48,542 | INFO     | -- intersect: 90644705268.50922
[2025-10-12 21:53:22] 2025-10-13 01:52:48,542 | INFO     | intersect: 90644705268.50922
[2025-10-12 21:53:22] 2025-10-13 01:52:48,543 | INFO     | chi2: 0.24727851969818687
[2025-10-12 21:53:22] 2025-10-13 01:52:48,543 | INFO     | current chi2=0.24727851969818687 (change=89.6436711714027 %)
[2025-10-12 21:53:22] 2025-10-13 01:52:48,543 | INFO     | sum of square deviations: 535790276.99166626
[2025-10-12 21:53:22] 2025-10-13 01:52:48,543 | INFO     | sum of deviations: -29295169726.799995
[2025-10-12 21:53:22] 2025-10-13 01:52:48,543 | INFO     | mean x: 1760316694.5916667
[2025-10-12 21:53:22] 2025-10-13 01:52:48,543 | INFO     | mean y: 2618900.8
[2025-10-12 21:53:22] 2025-10-13 01:52:48,543 | INFO     | -- intersect: 96250681912.56035
[2025-10-12 21:53:22] 2025-10-13 01:52:48,544 | INFO     | intersect: 96250681912.56035
[2025-10-12 21:53:22] 2025-10-13 01:52:48,544 | INFO     | chi2: 0.22372442120452507
[2025-10-12 21:53:22] 2025-10-13 01:52:48,544 | INFO     | current chi2=0.22372442120452507 (change=9.525331404608254 %)
[2025-10-12 21:53:22] 2025-10-13 01:52:48,544 | INFO     | left removable region: 20
[2025-10-12 21:53:22] 2025-10-13 01:52:48,544 | INFO     | sum of square deviations: 348770132.83653814
[2025-10-12 21:53:22] 2025-10-13 01:52:48,544 | INFO     | sum of deviations: -18088795134.71154
[2025-10-12 21:53:22] 2025-10-13 01:52:48,544 | INFO     | mean x: 1760316816.6057692
[2025-10-12 21:53:22] 2025-10-13 01:52:48,545 | INFO     | mean y: 2597684.519230769
[2025-10-12 21:53:22] 2025-10-13 01:52:48,545 | INFO     | -- intersect: 91300582431.08893
[2025-10-12 21:53:22] 2025-10-13 01:52:48,545 | INFO     | intersect: 91300582431.08893
[2025-10-12 21:53:22] 2025-10-13 01:52:48,545 | INFO     | chi2: 0.20072866677790577
[2025-10-12 21:53:22] 2025-10-13 01:52:48,545 | INFO     | -- intersect: 91300582431.08893
[2025-10-12 21:53:22] 2025-10-13 01:52:48,545 | INFO     | current memory leak: -51.86 B/s (using 104 data points, chi2=0.20)
[2025-10-12 21:53:22] 2025-10-13 01:52:48,545 | INFO     | could have reported an average CPU frequency of 3222 MHz (8 samples)
[2025-10-12 21:53:22] 2025-10-13 01:52:48,546 | INFO     | ..............................
[2025-10-12 21:53:22] 2025-10-13 01:52:48,546 | INFO     | . Timing measurements:
[2025-10-12 21:53:22] 2025-10-13 01:52:48,546 | INFO     | . get job = 0 s
[2025-10-12 21:53:22] 2025-10-13 01:52:48,546 | INFO     | . initial setup = 3 s
[2025-10-12 21:53:22] 2025-10-13 01:52:48,546 | INFO     | . payload setup = 42 s
[2025-10-12 21:53:22] 2025-10-13 01:52:48,546 | INFO     | . stage-in = 0 s
[2025-10-12 21:53:22] 2025-10-13 01:52:48,546 | INFO     | . payload execution = 7927 s
[2025-10-12 21:53:22] 2025-10-13 01:52:48,546 | INFO     | . stage-out = 0 s
[2025-10-12 21:53:22] 2025-10-13 01:52:48,546 | INFO     | . log creation = 0 s
[2025-10-12 21:53:22] 2025-10-13 01:52:48,546 | INFO     | ..............................
[2025-10-12 21:53:22] 2025-10-13 01:52:48,703 | INFO     | 
[2025-10-12 21:53:22] 2025-10-13 01:52:48,703 | INFO     | job summary report
[2025-10-12 21:53:22] 2025-10-13 01:52:48,703 | INFO     | --------------------------------------------------
[2025-10-12 21:53:22] 2025-10-13 01:52:48,703 | INFO     | PanDA job id: 6840537520
[2025-10-12 21:53:22] 2025-10-13 01:52:48,703 | INFO     | task id: 46676269
[2025-10-12 21:53:22] 2025-10-13 01:52:48,703 | INFO     | errors: (none)
[2025-10-12 21:53:22] 2025-10-13 01:52:48,704 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:53:22] 2025-10-13 01:52:48,704 | INFO     | pilot state: finished 
[2025-10-12 21:53:22] 2025-10-13 01:52:48,704 | INFO     | transexitcode: 0
[2025-10-12 21:53:22] 2025-10-13 01:52:48,704 | INFO     | exeerrorcode: 0
[2025-10-12 21:53:22] 2025-10-13 01:52:48,704 | INFO     | exeerrordiag: 
[2025-10-12 21:53:22] 2025-10-13 01:52:48,704 | INFO     | exitcode: 0
[2025-10-12 21:53:22] 2025-10-13 01:52:48,704 | INFO     | exitmsg: OK
[2025-10-12 21:53:22] 2025-10-13 01:52:48,704 | INFO     | cpuconsumptiontime: 32992 s
[2025-10-12 21:53:22] 2025-10-13 01:52:48,704 | INFO     | nevents: 400
[2025-10-12 21:53:22] 2025-10-13 01:52:48,704 | INFO     | neventsw: 0
[2025-10-12 21:53:22] 2025-10-13 01:52:48,704 | INFO     | pid: 3811489
[2025-10-12 21:53:22] 2025-10-13 01:52:48,704 | INFO     | pgrp: 3811489
[2025-10-12 21:53:22] 2025-10-13 01:52:48,704 | INFO     | corecount: 8
[2025-10-12 21:53:22] 2025-10-13 01:52:48,704 | INFO     | event service: False
[2025-10-12 21:53:22] 2025-10-13 01:52:48,704 | INFO     | sizes: {0: 2347978, 1: 2348834, 2: 2348834, 14: 2348862, 25: 2348890, 30: 2349180, 36: 2349336, 7974: 2377131, 7976: 2386129, 7977: 2386185, 7986: 2386379}
[2025-10-12 21:53:22] 2025-10-13 01:52:48,705 | INFO     | --------------------------------------------------
[2025-10-12 21:53:22] 2025-10-13 01:52:48,705 | INFO     | 
[2025-10-12 21:53:22] 2025-10-13 01:52:48,705 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 21:53:22] 2025-10-13 01:52:48,833 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,834 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,834 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,834 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,834 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,834 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,834 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,834 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,834 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,834 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,834 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,834 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,834 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,834 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,834 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,834 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,835 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,835 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:53:22] 2025-10-13 01:52:48,835 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,835 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:53:22] 2025-10-13 01:52:48,835 | INFO     | job 6840537520 has completed (purged errors)
[2025-10-12 21:53:22] 2025-10-13 01:52:48,835 | INFO     | overall cleanup function is called
[2025-10-12 21:53:22] 2025-10-13 01:52:49,850 | INFO     | --- collectZombieJob: --- 10, [3811489]
[2025-10-12 21:53:22] 2025-10-13 01:52:49,850 | INFO     | zombie collector waiting for pid 3811489
[2025-10-12 21:53:22] 2025-10-13 01:52:49,850 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:53:22] 2025-10-13 01:52:49,850 | INFO     | collected zombie processes
[2025-10-12 21:53:22] 2025-10-13 01:52:49,850 | INFO     | will attempt to kill all subprocesses of pid=3811489
[2025-10-12 21:53:22] 2025-10-13 01:52:50,202 | INFO     | process IDs to be killed: [3811489] (in reverse order)
[2025-10-12 21:53:22] 2025-10-13 01:52:50,307 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:53:22] 2025-10-13 01:52:50,307 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:53:22] 2025-10-13 01:52:50,381 | INFO     | did not find any defunct processes belonging to 3811489
[2025-10-12 21:53:22] 2025-10-13 01:52:50,393 | INFO     | did not find any defunct processes belonging to 3811489
[2025-10-12 21:53:22] 2025-10-13 01:52:50,394 | INFO     | ready for new job
[2025-10-12 21:53:22] 2025-10-13 01:52:50,396 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:53:22] 2025-10-13 01:52:50,398 | INFO     | ***************************************
[2025-10-12 21:53:22] 2025-10-13 01:52:50,399 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:53:22] 2025-10-13 01:52:50,399 | INFO     | ***************************************
[2025-10-12 21:53:22] 2025-10-13 01:52:50,399 | INFO     | 
[2025-10-12 21:53:22] 2025-10-13 01:52:50,403 | INFO     | architecture information:
[2025-10-12 21:53:22] 2025-10-13 01:52:50,404 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:53:22] 2025-10-13 01:52:50,434 | INFO     | cat /etc/os-release:
[2025-10-12 21:53:22] NAME="CentOS Linux"
[2025-10-12 21:53:22] VERSION="7 (Core)"
[2025-10-12 21:53:22] ID="centos"
[2025-10-12 21:53:22] ID_LIKE="rhel fedora"
[2025-10-12 21:53:22] VERSION_ID="7"
[2025-10-12 21:53:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:53:22] ANSI_COLOR="0;31"
[2025-10-12 21:53:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:53:22] HOME_URL="https://www.centos.org/"
[2025-10-12 21:53:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:53:22] 
[2025-10-12 21:53:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:53:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:53:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:53:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:53:22] 
[2025-10-12 21:53:22] 2025-10-13 01:52:50,434 | INFO     | ***************************************
[2025-10-12 21:53:22] 2025-10-13 01:52:50,938 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 21:53:22] 2025-10-13 01:52:50,965 | INFO     | sufficient remaining disk space (85044756480 B)
[2025-10-12 21:53:22] 2025-10-13 01:52:50,966 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:53:22] 2025-10-13 01:52:50,966 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:53:22] 2025-10-13 01:52:50,966 | INFO     | update_server=False
[2025-10-12 21:53:22] 2025-10-13 01:52:50,966 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:53:22] 2025-10-13 01:52:50,967 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:53:22] 2025-10-13 01:52:50,971 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:53:22] 2025-10-13 01:52:50,971 | INFO     | aborting loop
[2025-10-12 21:53:22] 2025-10-13 01:52:50,975 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:53:22] 2025-10-13 01:52:51,247 | INFO     | all payload control threads have been joined
[2025-10-12 21:53:22] 2025-10-13 01:52:51,685 | INFO     | all data control threads have been joined
[2025-10-12 21:53:22] 2025-10-13 01:52:51,685 | INFO     | all job control threads have been joined
[2025-10-12 21:53:22] 2025-10-13 01:52:51,972 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:53:22] 2025-10-13 01:52:51,977 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:53:22] 2025-10-13 01:52:51,985 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:53:22] 2025-10-13 01:52:52,203 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:53:22] 2025-10-13 01:52:52,254 | INFO     | [payload] control thread has finished
[2025-10-12 21:53:22] 2025-10-13 01:52:52,691 | INFO     | [data] control thread has finished
[2025-10-12 21:53:22] 2025-10-13 01:52:52,692 | INFO     | [job] control thread has finished
[2025-10-12 21:53:22] 2025-10-13 01:52:52,738 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:53:22] 2025-10-13 01:52:52,741 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:53:22] 2025-10-13 01:52:52,828 | INFO     | [job] validate thread has finished
[2025-10-12 21:53:22] 2025-10-13 01:52:52,953 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:53:22] 2025-10-13 01:52:52,974 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:53:22] 2025-10-13 01:52:52,976 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:53:22] 2025-10-13 01:52:53,063 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:53:22] 2025-10-13 01:52:53,202 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:53:22] 2025-10-13 01:52:53,711 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:53:22] 2025-10-13 01:52:54,716 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:53:22] 2025-10-13 01:52:55,002 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:53:22] 2025-10-13 01:52:55,186 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140360822642496)>', '<ExcThread(monitor, started 140360026138368)>']
[2025-10-12 21:53:22] 2025-10-13 01:53:00,213 | INFO     | all workflow threads have been joined
[2025-10-12 21:53:22] 2025-10-13 01:53:00,213 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:53:22] 2025-10-13 01:53:00,214 | INFO     | traces error code: 0
[2025-10-12 21:53:22] 2025-10-13 01:53:00,214 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:53:22] 2025-10-13 01:53:21,800 | INFO     | PID=3803220 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 21:53:22] 2025-10-13 01:53:21,800 | INFO     | .. there are 11 such processes running
[2025-10-12 21:53:22] 2025-10-13 01:53:21,804 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:53:22] 2025-10-13 01:53:21,804 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:53:22] 2025-10-13 01:53:21,804 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:53:22] 2025-10-13 01:53:21,804 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:53:22] 2025-10-13 01:53:21,804 | INFO     | [monitor] control thread has ended
[2025-10-12 21:53:22] 2025-10-13 01:53:22,113 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:53:22] 2025-10-13 01:53:22,139 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:53:22] 2025-10-13 01:53:22,142 [wrapper] pilotpid: 3803220
[2025-10-12 21:53:22] 2025-10-13 01:53:22,149 [wrapper] Pilot exit status: 0
[2025-10-12 21:53:22] 2025-10-13 01:53:22,165 [wrapper] pandaids: 6840537520
[2025-10-12 21:53:22] 2025-10-13 01:53:22,252 [wrapper] cleanup supervisor_pilot 3974822 3803221
[2025-10-12 21:53:22] 2025-10-13 01:53:22,260 [wrapper] Test setup, not cleaning
[2025-10-12 21:53:22] 2025-10-13 01:53:22,269 [wrapper] apfmon messages muted
[2025-10-12 21:53:22] 2025-10-13 01:53:22,276 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:53:22] 2025-10-13 01:53:22,280 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:53:22]  *** Error codes and diagnostics ***
[2025-10-12 21:53:22]     "exeErrorCode": 0,
[2025-10-12 21:53:22]     "exeErrorDiag": "",
[2025-10-12 21:53:22]     "pilotErrorCode": 0,
[2025-10-12 21:53:22]     "pilotErrorDiag": "",
[2025-10-12 21:53:22]  *** Listing of results directory ***
[2025-10-12 21:53:22] total 409340
[2025-10-12 21:53:22] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 14:20 pilot3.tar.gz
[2025-10-12 21:53:22] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 14:48 queuedata.json
[2025-10-12 21:53:22] -rwx------. 1 boincer umatlas     36292 Oct 12 14:48 runpilot2-wrapper.sh
[2025-10-12 21:53:22] -rw-r--r--. 1 boincer umatlas       100 Oct 12 19:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:53:22] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 19:37 run_atlas
[2025-10-12 21:53:22] -rw-r--r--. 1 boincer umatlas       105 Oct 12 19:37 job.xml
[2025-10-12 21:53:22] -rw-r--r--. 2 boincer umatlas 222856809 Oct 12 19:37 EVNT.46676267._004426.pool.root.1
[2025-10-12 21:53:22] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 19:37 start_atlas.sh
[2025-10-12 21:53:22] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 19:37 shared
[2025-10-12 21:53:22] -rw-r--r--. 2 boincer umatlas    569680 Oct 12 19:37 input.tar.gz
[2025-10-12 21:53:22] -rw-r--r--. 1 boincer umatlas         0 Oct 12 19:37 boinc_lockfile
[2025-10-12 21:53:22] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 19:37 pandaJob.out
[2025-10-12 21:53:22] -rw-------. 1 boincer umatlas    975603 Oct 12 19:38 agis_schedconf.cvmfs.json
[2025-10-12 21:53:22] -rw-------. 1 boincer umatlas   1560580 Oct 12 19:38 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:53:22] drwx------. 5 boincer umatlas      4096 Oct 12 19:38 pilot3
[2025-10-12 21:53:22] -rw-r--r--. 1 boincer umatlas      6898 Oct 12 21:47 init_data.xml
[2025-10-12 21:53:22] -rw-------. 1 boincer umatlas 189434832 Oct 12 21:52 HITS.46676269._086667.pool.root.1
[2025-10-12 21:53:22] -rw-r--r--. 1 boincer umatlas       530 Oct 12 21:52 boinc_task_state.xml
[2025-10-12 21:53:22] -rw-------. 1 boincer umatlas      1046 Oct 12 21:52 memory_monitor_summary.json
[2025-10-12 21:53:22] -rw-------. 1 boincer umatlas    378754 Oct 12 21:52 log.46676269._086667.job.log.tgz.1
[2025-10-12 21:53:22] -rw-------. 1 boincer umatlas        95 Oct 12 21:52 pilot_heartbeat.json
[2025-10-12 21:53:22] -rw-------. 1 boincer umatlas      7782 Oct 12 21:52 heartbeat.json
[2025-10-12 21:53:22] -rw-r--r--. 1 boincer umatlas        27 Oct 12 21:53 wrapper_checkpoint.txt
[2025-10-12 21:53:22] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 21:53 boinc_mmap_file
[2025-10-12 21:53:22] -rw-------. 1 boincer umatlas       823 Oct 12 21:53 pilotlog.txt
[2025-10-12 21:53:22] -rw-------. 1 boincer umatlas   1103404 Oct 12 21:53 log.46676269._086667.job.log.1
[2025-10-12 21:53:22] -rw-------. 1 boincer umatlas       357 Oct 12 21:53 output.list
[2025-10-12 21:53:22] -rw-r--r--. 1 boincer umatlas       620 Oct 12 21:53 runtime_log
[2025-10-12 21:53:22] -rw-------. 1 boincer umatlas   1505280 Oct 12 21:53 result.tar.gz
[2025-10-12 21:53:22] -rw-r--r--. 1 boincer umatlas      8703 Oct 12 21:53 runtime_log.err
[2025-10-12 21:53:22] -rw-------. 1 boincer umatlas       652 Oct 12 21:53 21iKDmRIGS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm39kNDmEJicOo.diag
[2025-10-12 21:53:22] -rw-r--r--. 1 boincer umatlas     21271 Oct 12 21:53 stderr.txt
[2025-10-12 21:53:22] HITS file was successfully produced:
[2025-10-12 21:53:22] -rw-------. 1 boincer umatlas 189434832 Oct 12 21:52 shared/HITS.pool.root.1
[2025-10-12 21:53:22]  *** Contents of shared directory: ***
[2025-10-12 21:53:22] total 404688
[2025-10-12 21:53:22] -rw-r--r--. 2 boincer umatlas 222856809 Oct 12 19:37 ATLAS.root_0
[2025-10-12 21:53:22] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 19:37 start_atlas.sh
[2025-10-12 21:53:22] -rw-r--r--. 2 boincer umatlas    569680 Oct 12 19:37 input.tar.gz
[2025-10-12 21:53:22] -rw-------. 1 boincer umatlas 189434832 Oct 12 21:52 HITS.pool.root.1
[2025-10-12 21:53:22] -rw-------. 1 boincer umatlas   1505280 Oct 12 21:53 result.tar.gz
21:53:24 (3798048): run_atlas exited; CPU time 33007.789658
21:53:24 (3798048): called boinc_finish(0)

</stderr_txt>
]]>

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