Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:07:53 (2476426): wrapper (7.7.26015): starting
10:07:53 (2476426): wrapper: running run_atlas (--nthreads 2)
[2025-10-13 10:07:53] Arguments: --nthreads 2
[2025-10-13 10:07:53] Threads: 2
[2025-10-13 10:07:53] Checking for CVMFS
[2025-10-13 10:07:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 10:07:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 10:07:53] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 10:07:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 10:07:53] 2.9.2.0 1214728 5500 62492 151653 0 57 26581563 36864001 0 130560 0 3338016 99.989 186118 796 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 10:07:53] CVMFS is ok
[2025-10-13 10:07:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 10:07:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 10:07:53] Further information can be found at the LHC@home message board.
[2025-10-13 10:07:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 10:07:53] Checking for apptainer binary...
[2025-10-13 10:07:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 10:07:53] Running /usr/bin/apptainer --version
[2025-10-13 10:07:53] apptainer version 1.4.1-1.1
[2025-10-13 10:07:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 10:07:53] madmaxA277a
[2025-10-13 10:07:53] apptainer works
[2025-10-13 10:07:53] Set ATHENA_PROC_NUMBER=2
[2025-10-13 10:07:53] Set ATHENA_CORE_NUMBER=2
[2025-10-13 10:07:53] Starting ATLAS job with PandaID=6840538159
[2025-10-13 10:07:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 12:08:21]  *** The last 200 lines of the pilot log: ***
[2025-10-13 12:08:21] 2025-10-13 10:07:35,792 | INFO     | process IDs to be killed: [2486538] (in reverse order)
[2025-10-13 12:08:21] 2025-10-13 10:07:35,813 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 12:08:21] 2025-10-13 10:07:35,813 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 12:08:21] 2025-10-13 10:07:35,814 | INFO     | did not find any defunct processes belonging to 2486538
[2025-10-13 12:08:21] 2025-10-13 10:07:35,814 | INFO     | did not find any defunct processes belonging to 2486538
[2025-10-13 12:08:21] 2025-10-13 10:07:35,814 | INFO     | ready for new job
[2025-10-13 12:08:21] 2025-10-13 10:07:35,814 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 12:08:21] 2025-10-13 10:07:35,815 | INFO     | ***************************************
[2025-10-13 12:08:21] 2025-10-13 10:07:35,815 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 12:08:21] 2025-10-13 10:07:35,815 | INFO     | ***************************************
[2025-10-13 12:08:21] 2025-10-13 10:07:35,815 | INFO     | 
[2025-10-13 12:08:21] 2025-10-13 10:07:35,815 | INFO     | architecture information:
[2025-10-13 12:08:21] 2025-10-13 10:07:35,815 | INFO     | executing command: cat /etc/os-release
[2025-10-13 12:08:21] 2025-10-13 10:07:35,824 | INFO     | cat /etc/os-release:
[2025-10-13 12:08:21] NAME="CentOS Linux"
[2025-10-13 12:08:21] VERSION="7 (Core)"
[2025-10-13 12:08:21] ID="centos"
[2025-10-13 12:08:21] ID_LIKE="rhel fedora"
[2025-10-13 12:08:21] VERSION_ID="7"
[2025-10-13 12:08:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 12:08:21] ANSI_COLOR="0;31"
[2025-10-13 12:08:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 12:08:21] HOME_URL="https://www.centos.org/"
[2025-10-13 12:08:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 12:08:21] 
[2025-10-13 12:08:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 12:08:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 12:08:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 12:08:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 12:08:21] 
[2025-10-13 12:08:21] 2025-10-13 10:07:35,824 | INFO     | ***************************************
[2025-10-13 12:08:21] 2025-10-13 10:07:36,327 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 12:08:21] 2025-10-13 10:07:36,340 | INFO     | sufficient remaining disk space (491985567744 B)
[2025-10-13 12:08:21] 2025-10-13 10:07:36,340 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 12:08:21] 2025-10-13 10:07:36,340 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 12:08:21] 2025-10-13 10:07:36,340 | INFO     | update_server=False
[2025-10-13 12:08:21] 2025-10-13 10:07:36,340 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 12:08:21] 2025-10-13 10:07:36,340 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:08:21] 2025-10-13 10:07:36,340 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 12:08:21] 2025-10-13 10:07:36,761 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 12:08:21] 2025-10-13 10:07:36,761 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 12:08:21] 2025-10-13 10:07:36,761 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:08:21] 2025-10-13 10:07:36,762 | INFO     | will abort loop
[2025-10-13 12:08:21] 2025-10-13 10:07:36,799 | INFO     | all payload control threads have been joined
[2025-10-13 12:08:21] 2025-10-13 10:07:37,125 | INFO     | all job control threads have been joined
[2025-10-13 12:08:21] 2025-10-13 10:07:37,301 | INFO     | all data control threads have been joined
[2025-10-13 12:08:21] 2025-10-13 10:07:37,346 | INFO     | [job] queue monitor thread has finished
[2025-10-13 12:08:21] 2025-10-13 10:07:37,346 | INFO     | [job] retrieve thread has finished
[2025-10-13 12:08:21] 2025-10-13 10:07:37,395 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 12:08:21] 2025-10-13 10:07:37,481 | INFO     | [job] validate thread has finished
[2025-10-13 12:08:21] 2025-10-13 10:07:37,499 | INFO     | [payload] failed_post thread has finished
[2025-10-13 12:08:21] 2025-10-13 10:07:37,647 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 12:08:21] 2025-10-13 10:07:37,767 | INFO     | [job] job monitor thread has finished
[2025-10-13 12:08:21] 2025-10-13 10:07:37,805 | INFO     | [payload] control thread has finished
[2025-10-13 12:08:21] 2025-10-13 10:07:38,051 | INFO     | [payload] validate_post thread has finished
[2025-10-13 12:08:21] 2025-10-13 10:07:38,131 | INFO     | [job] control thread has finished
[2025-10-13 12:08:21] 2025-10-13 10:07:38,256 | INFO     | [data] copytool_in thread has finished
[2025-10-13 12:08:21] 2025-10-13 10:07:38,306 | INFO     | [data] control thread has finished
[2025-10-13 12:08:21] 2025-10-13 10:07:38,346 | INFO     | [data] copytool_out thread has finished
[2025-10-13 12:08:21] 2025-10-13 10:07:38,384 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 12:08:21] 2025-10-13 10:07:38,538 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 12:08:21] 2025-10-13 10:07:42,545 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 12:08:21] 2025-10-13 10:07:46,896 | INFO     | job.realtimelogging is not enabled
[2025-10-13 12:08:21] 2025-10-13 10:07:47,899 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 12:08:21] 2025-10-13 10:08:05,050 [wrapper] supervise_pilot (15 min periods counter: 9)
[2025-10-13 12:08:21] 2025-10-13 10:08:07,202 | INFO     | PID=2480128 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 12:08:21] 2025-10-13 10:08:07,202 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 12:08:21] 2025-10-13 10:08:07,202 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 12:08:21] 2025-10-13 10:08:07,202 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 12:08:21] 2025-10-13 10:08:16,012 | INFO     | [monitor] cgroup control has ended
[2025-10-13 12:08:21] 2025-10-13 10:08:16,744 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140405469280064)>', '<ExcThread(monitor, started 140404611602176)>']
[2025-10-13 12:08:21] 2025-10-13 10:08:17,251 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 12:08:21] 2025-10-13 10:08:17,251 | INFO     | [monitor] control thread has ended
[2025-10-13 12:08:21] 2025-10-13 10:08:21,770 | INFO     | all workflow threads have been joined
[2025-10-13 12:08:21] 2025-10-13 10:08:21,770 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 12:08:21] 2025-10-13 10:08:21,771 | INFO     | traces error code: 0
[2025-10-13 12:08:21] 2025-10-13 10:08:21,771 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 12:08:21] 2025-10-13 10:08:21,814 [wrapper] ==== pilot stdout END ====
[2025-10-13 12:08:21] 2025-10-13 10:08:21,816 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 12:08:21] 2025-10-13 10:08:21,818 [wrapper] pilotpid: 2480128
[2025-10-13 12:08:21] 2025-10-13 10:08:21,820 [wrapper] Pilot exit status: 0
[2025-10-13 12:08:21] 2025-10-13 10:08:21,826 [wrapper] pandaids: 6840538159
[2025-10-13 12:08:21] 2025-10-13 10:08:21,837 [wrapper] cleanup supervisor_pilot 2503089 2480129
[2025-10-13 12:08:21] 2025-10-13 10:08:21,838 [wrapper] Test setup, not cleaning
[2025-10-13 12:08:21] 2025-10-13 10:08:21,841 [wrapper] apfmon messages muted
[2025-10-13 12:08:21] 2025-10-13 10:08:21,843 [wrapper] ==== wrapper stdout END ====
[2025-10-13 12:08:21] 2025-10-13 10:08:21,844 [wrapper] ==== wrapper stderr END ====
[2025-10-13 12:08:21]  *** Error codes and diagnostics ***
[2025-10-13 12:08:21]     "exeErrorCode": 0,
[2025-10-13 12:08:21]     "exeErrorDiag": "",
[2025-10-13 12:08:21]     "pilotErrorCode": 0,
[2025-10-13 12:08:21]     "pilotErrorDiag": "",
[2025-10-13 12:08:21]  *** Listing of results directory ***
[2025-10-13 12:08:21] total 404616
[2025-10-13 12:08:21] -rw-r--r-- 1 boinc boinc    557409 Oct 12 20:53 pilot3.tar.gz
[2025-10-13 12:08:21] -rw-r--r-- 1 boinc boinc      5112 Oct 12 21:09 queuedata.json
[2025-10-13 12:08:21] -rwx------ 1 boinc boinc     36292 Oct 12 21:09 runpilot2-wrapper.sh
[2025-10-13 12:08:21] -rw-r--r-- 1 boinc boinc       100 Oct 13 10:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 12:08:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 10:07 run_atlas
[2025-10-13 12:08:21] -rw-r--r-- 1 boinc boinc       105 Oct 13 10:07 job.xml
[2025-10-13 12:08:21] -rw-r--r-- 2 boinc boinc 218471878 Oct 13 10:07 EVNT.46676267._004441.pool.root.1
[2025-10-13 12:08:21] -rw-r--r-- 2 boinc boinc    569679 Oct 13 10:07 input.tar.gz
[2025-10-13 12:08:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:07 start_atlas.sh
[2025-10-13 12:08:21] drwxrwx--x 2 boinc boinc      4096 Oct 13 10:07 shared
[2025-10-13 12:08:21] -rw-r--r-- 1 boinc boinc         0 Oct 13 10:07 boinc_setup_complete
[2025-10-13 12:08:21] -rw-r--r-- 1 boinc boinc      6210 Oct 13 10:07 init_data.xml
[2025-10-13 12:08:21] -rw-r--r-- 1 boinc boinc         0 Oct 13 10:07 boinc_lockfile
[2025-10-13 12:08:21] -rw-r--r-- 1 boinc boinc      2549 Oct 13 10:07 pandaJob.out
[2025-10-13 12:08:21] -rw------- 1 boinc boinc    972849 Oct 13 10:08 agis_schedconf.cvmfs.json
[2025-10-13 12:08:21] -rw------- 1 boinc boinc   1560580 Oct 13 10:08 agis_ddmendpoints.agis.ALL.json
[2025-10-13 12:08:21] drwx------ 5 boinc boinc      4096 Oct 13 10:08 pilot3
[2025-10-13 12:08:21] -rw------- 1 boinc boinc 189380101 Oct 13 12:07 HITS.46676269._087031.pool.root.1
[2025-10-13 12:08:21] -rw-r--r-- 1 boinc boinc       529 Oct 13 12:07 boinc_task_state.xml
[2025-10-13 12:08:21] -rw------- 1 boinc boinc      1020 Oct 13 12:07 memory_monitor_summary.json
[2025-10-13 12:08:21] -rw------- 1 boinc boinc    259214 Oct 13 12:07 log.46676269._087031.job.log.tgz.1
[2025-10-13 12:08:21] -rw------- 1 boinc boinc      7761 Oct 13 12:07 heartbeat.json
[2025-10-13 12:08:21] -rw------- 1 boinc boinc        95 Oct 13 12:08 pilot_heartbeat.json
[2025-10-13 12:08:21] -rw-r--r-- 1 boinc boinc      8192 Oct 13 12:08 boinc_mmap_file
[2025-10-13 12:08:21] -rw-r--r-- 1 boinc boinc        27 Oct 13 12:08 wrapper_checkpoint.txt
[2025-10-13 12:08:21] -rw------- 1 boinc boinc      5010 Oct 13 12:08 pilotlog.txt
[2025-10-13 12:08:21] -rw------- 1 boinc boinc   1032295 Oct 13 12:08 log.46676269._087031.job.log.1
[2025-10-13 12:08:21] -rw------- 1 boinc boinc       357 Oct 13 12:08 output.list
[2025-10-13 12:08:21] -rw-r--r-- 1 boinc boinc       620 Oct 13 12:08 runtime_log
[2025-10-13 12:08:21] -rw------- 1 boinc boinc   1310720 Oct 13 12:08 result.tar.gz
[2025-10-13 12:08:21] -rw-r--r-- 1 boinc boinc      8802 Oct 13 12:08 runtime_log.err
[2025-10-13 12:08:21] -rw------- 1 boinc boinc       664 Oct 13 12:08 GM2LDmLdGS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyElNDm4HsG8n.diag
[2025-10-13 12:08:21] -rw-r--r-- 1 boinc boinc     10512 Oct 13 12:08 stderr.txt
[2025-10-13 12:08:21] HITS file was successfully produced:
[2025-10-13 12:08:21] -rw------- 1 boinc boinc 189380101 Oct 13 12:07 shared/HITS.pool.root.1
[2025-10-13 12:08:21]  *** Contents of shared directory: ***
[2025-10-13 12:08:21] total 400160
[2025-10-13 12:08:21] -rw-r--r-- 2 boinc boinc 218471878 Oct 13 10:07 ATLAS.root_0
[2025-10-13 12:08:21] -rw-r--r-- 2 boinc boinc    569679 Oct 13 10:07 input.tar.gz
[2025-10-13 12:08:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:07 start_atlas.sh
[2025-10-13 12:08:21] -rw------- 1 boinc boinc 189380101 Oct 13 12:07 HITS.pool.root.1
[2025-10-13 12:08:21] -rw------- 1 boinc boinc   1310720 Oct 13 12:08 result.tar.gz
12:08:23 (2476426): run_atlas exited; CPU time 13931.214662
12:08:23 (2476426): called boinc_finish(0)

</stderr_txt>
]]>

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