Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:37:22 (2078972): wrapper (7.7.26015): starting
15:37:22 (2078972): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 15:37:22] Arguments: --nthreads 12
[2025-10-13 15:37:22] Threads: 12
[2025-10-13 15:37:22] Checking for CVMFS
[2025-10-13 15:37:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 15:37:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 15:37:22] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 15:37:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 15:37:22] 2.13.1.0 2980946 5869 77516 151662 3 57 2966713 4097024 0 130560 0 9311315 99.995 195528 7713 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-10-13 15:37:22] CVMFS is ok
[2025-10-13 15:37:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 15:37:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 15:37:22] Further information can be found at the LHC@home message board.
[2025-10-13 15:37:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 15:37:22] Checking for apptainer binary...
[2025-10-13 15:37:22] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-10-13 15:37:22] apptainer is not installed, using version from CVMFS
[2025-10-13 15:37:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 15:37:22] pckelar2.cern.ch
[2025-10-13 15:37:22] apptainer works
[2025-10-13 15:37:22] Set ATHENA_PROC_NUMBER=12
[2025-10-13 15:37:22] Set ATHENA_CORE_NUMBER=12
[2025-10-13 15:37:22] Starting ATLAS job with PandaID=6840429728
[2025-10-13 15:37:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 16:26:41]  *** The last 200 lines of the pilot log: ***
[2025-10-13 16:26:41] 2025-10-13 14:25:26,991 | INFO     | transferring file log.46676269._084841.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6840429728/log.46676269._084841.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 16:26:41] 2025-10-13 14:25:26,991 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6840429728/log.46676269._084841.job.log.tgz.1 /var/lib/boinc/slots/0/log.46676269._084841.job
[2025-10-13 16:26:41] 2025-10-13 14:25:27,005 | INFO     | adding to output.list: log.46676269._084841.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/23/log.46676269._084841.job.log.tg
[2025-10-13 16:26:41] 2025-10-13 14:25:27,006 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 16:26:41] 2025-10-13 14:25:27,006 | INFO     | summary of transferred files:
[2025-10-13 16:26:41] 2025-10-13 14:25:27,006 | INFO     |  -- lfn=log.46676269._084841.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 16:26:41] 2025-10-13 14:25:27,007 | INFO     | stage-out finished correctly
[2025-10-13 16:26:41] 2025-10-13 14:25:27,246 | WARNING  | process 2090210 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 16:26:41] 2025-10-13 14:25:27,247 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6840429728/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 16:26:41] 2025-10-13 14:25:27,323 | INFO     | number of running child processes to parent process 2090210: 1
[2025-10-13 16:26:41] 2025-10-13 14:25:27,323 | INFO     | maximum number of monitored processes: 6
[2025-10-13 16:26:41] 2025-10-13 14:25:28,990 | INFO     | time since job start (2878s) is within the limit (172800.0s)
[2025-10-13 16:26:41] 2025-10-13 14:25:29,725 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 16:26:41] 2025-10-13 14:25:29,825 | INFO     | monitor loop #222: job 0:6840429728 is in state 'finished'
[2025-10-13 16:26:41] 2025-10-13 14:25:29,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:26:41] 2025-10-13 14:25:30,996 | INFO     | time since job start (2880s) is within the limit (172800.0s)
[2025-10-13 16:26:41] 2025-10-13 14:25:32,097 | INFO     | PID=2082789 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 16:26:41] 2025-10-13 14:25:32,328 | INFO     | monitor loop #223: job 0:6840429728 is in state 'finished'
[2025-10-13 16:26:41] 2025-10-13 14:25:32,328 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:26:41] 2025-10-13 14:25:32,461 | INFO     | job 6840429728 has state=finished
[2025-10-13 16:26:41] 2025-10-13 14:25:32,462 | INFO     | preparing for final server update for job 6840429728 in state='finished'
[2025-10-13 16:26:41] 2025-10-13 14:25:32,462 | INFO     | this job has now completed (state=finished)
[2025-10-13 16:26:41] 2025-10-13 14:25:32,462 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 16:26:41] 2025-10-13 14:25:32,462 | INFO     | log transfer has been attempted: DONE
[2025-10-13 16:26:41] 2025-10-13 14:25:32,462 | INFO     | job 6840429728 has finished - writing final server update
[2025-10-13 16:26:41] 2025-10-13 14:25:32,462 | INFO     | total number of processed events: 400 (read)
[2025-10-13 16:26:41] 2025-10-13 14:25:32,464 | INFO     | executing command: lscpu
[2025-10-13 16:26:41] 2025-10-13 14:25:32,484 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 16:26:41] 2025-10-13 14:25:33,098 | INFO     | time since job start (2883s) is within the limit (172800.0s)
[2025-10-13 16:26:41] 2025-10-13 14:25:34,831 | INFO     | monitor loop #224: job 0:6840429728 is in state 'finished'
[2025-10-13 16:26:41] 2025-10-13 14:25:34,831 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:26:41] 2025-10-13 14:25:35,103 | INFO     | time since job start (2885s) is within the limit (172800.0s)
[2025-10-13 16:26:41] 2025-10-13 14:25:37,108 | INFO     | time since job start (2887s) is within the limit (172800.0s)
[2025-10-13 16:26:41] 2025-10-13 14:25:37,334 | INFO     | monitor loop #225: job 0:6840429728 is in state 'finished'
[2025-10-13 16:26:41] 2025-10-13 14:25:37,334 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:26:41] 2025-10-13 14:25:38,001 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 16:26:41] 2025-10-13 14:25:38,004 | INFO     | found 20 cores (10 cores per socket, 2 sockets) , CPU MHz: 2582.48695
[2025-10-13 16:26:41] 2025-10-13 14:25:38,007 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6840429728/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 16:26:41] 2025-10-13 14:25:38,007 | INFO     | extracted standard info from prmon json
[2025-10-13 16:26:41] 2025-10-13 14:25:38,007 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 16:26:41] 2025-10-13 14:25:38,007 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 16:26:41] 2025-10-13 14:25:38,008 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 16:26:41] 2025-10-13 14:25:38,008 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 16:26:41] 2025-10-13 14:25:38,009 | INFO     | fitting pss+swap vs Time
[2025-10-13 16:26:41] 2025-10-13 14:25:38,009 | INFO     | sum of square deviations: 19832930.0
[2025-10-13 16:26:41] 2025-10-13 14:25:38,009 | INFO     | sum of deviations: -4885187836.5
[2025-10-13 16:26:41] 2025-10-13 14:25:38,009 | INFO     | mean x: 1760364169.5
[2025-10-13 16:26:41] 2025-10-13 14:25:38,009 | INFO     | mean y: 2971732.475
[2025-10-13 16:26:41] 2025-10-13 14:25:38,009 | INFO     | -- intersect: 433610594441.3649
[2025-10-13 16:26:41] 2025-10-13 14:25:38,009 | INFO     | intersect: 433610594441.3649
[2025-10-13 16:26:41] 2025-10-13 14:25:38,009 | INFO     | chi2: 0.05398039484810215
[2025-10-13 16:26:41] 2025-10-13 14:25:38,009 | INFO     | -- intersect: 433610594441.3649
[2025-10-13 16:26:41] 2025-10-13 14:25:38,010 | INFO     | current memory leak: -246.32 B/s (using 40 data points, chi2=0.05)
[2025-10-13 16:26:41] 2025-10-13 14:25:38,010 | INFO     | could have reported an average CPU frequency of 2561 MHz (5 samples)
[2025-10-13 16:26:41] 2025-10-13 14:25:38,010 | INFO     | ..............................
[2025-10-13 16:26:41] 2025-10-13 14:25:38,010 | INFO     | . Timing measurements:
[2025-10-13 16:26:41] 2025-10-13 14:25:38,010 | INFO     | . get job = 0 s
[2025-10-13 16:26:41] 2025-10-13 14:25:38,010 | INFO     | . initial setup = 1 s
[2025-10-13 16:26:41] 2025-10-13 14:25:38,010 | INFO     | . payload setup = 6 s
[2025-10-13 16:26:41] 2025-10-13 14:25:38,010 | INFO     | . stage-in = 0 s
[2025-10-13 16:26:41] 2025-10-13 14:25:38,010 | INFO     | . payload execution = 2851 s
[2025-10-13 16:26:41] 2025-10-13 14:25:38,010 | INFO     | . stage-out = 0 s
[2025-10-13 16:26:41] 2025-10-13 14:25:38,010 | INFO     | . log creation = 0 s
[2025-10-13 16:26:41] 2025-10-13 14:25:38,010 | INFO     | ..............................
[2025-10-13 16:26:41] 2025-10-13 14:25:38,067 | INFO     | 
[2025-10-13 16:26:41] 2025-10-13 14:25:38,067 | INFO     | job summary report
[2025-10-13 16:26:41] 2025-10-13 14:25:38,067 | INFO     | --------------------------------------------------
[2025-10-13 16:26:41] 2025-10-13 14:25:38,067 | INFO     | PanDA job id: 6840429728
[2025-10-13 16:26:41] 2025-10-13 14:25:38,067 | INFO     | task id: 46676269
[2025-10-13 16:26:41] 2025-10-13 14:25:38,067 | INFO     | errors: (none)
[2025-10-13 16:26:41] 2025-10-13 14:25:38,067 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 16:26:41] 2025-10-13 14:25:38,068 | INFO     | pilot state: finished 
[2025-10-13 16:26:41] 2025-10-13 14:25:38,068 | INFO     | transexitcode: 0
[2025-10-13 16:26:41] 2025-10-13 14:25:38,068 | INFO     | exeerrorcode: 0
[2025-10-13 16:26:41] 2025-10-13 14:25:38,068 | INFO     | exeerrordiag: 
[2025-10-13 16:26:41] 2025-10-13 14:25:38,068 | INFO     | exitcode: 0
[2025-10-13 16:26:41] 2025-10-13 14:25:38,068 | INFO     | exitmsg: OK
[2025-10-13 16:26:41] 2025-10-13 14:25:38,068 | INFO     | cpuconsumptiontime: 30219 s
[2025-10-13 16:26:41] 2025-10-13 14:25:38,068 | INFO     | nevents: 400
[2025-10-13 16:26:41] 2025-10-13 14:25:38,068 | INFO     | neventsw: 0
[2025-10-13 16:26:41] 2025-10-13 14:25:38,068 | INFO     | pid: 2090210
[2025-10-13 16:26:41] 2025-10-13 14:25:38,068 | INFO     | pgrp: 2090210
[2025-10-13 16:26:41] 2025-10-13 14:25:38,068 | INFO     | corecount: 12
[2025-10-13 16:26:41] 2025-10-13 14:25:38,068 | INFO     | event service: False
[2025-10-13 16:26:41] 2025-10-13 14:25:38,068 | INFO     | sizes: {0: 2348856, 1: 2348856, 4: 2349146, 11: 2349174, 2860: 2374575, 2862: 2383573, 2864: 2383757, 2873: 2383983}
[2025-10-13 16:26:41] 2025-10-13 14:25:38,068 | INFO     | --------------------------------------------------
[2025-10-13 16:26:41] 2025-10-13 14:25:38,068 | INFO     | 
[2025-10-13 16:26:41] 2025-10-13 14:25:38,068 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-13 16:26:41] 2025-10-13 14:25:38,085 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,085 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,085 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,085 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,085 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,086 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,086 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,086 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,086 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,086 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,086 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,086 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,086 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,086 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,086 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,086 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,086 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,086 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 16:26:41] 2025-10-13 14:25:38,086 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,086 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 16:26:41] 2025-10-13 14:25:38,087 | INFO     | job 6840429728 has completed (purged errors)
[2025-10-13 16:26:41] 2025-10-13 14:25:38,087 | INFO     | overall cleanup function is called
[2025-10-13 16:26:41] 2025-10-13 14:25:39,093 | INFO     | --- collectZombieJob: --- 10, [2090210]
[2025-10-13 16:26:41] 2025-10-13 14:25:39,093 | INFO     | zombie collector waiting for pid 2090210
[2025-10-13 16:26:41] 2025-10-13 14:25:39,093 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 16:26:41] 2025-10-13 14:25:39,094 | INFO     | collected zombie processes
[2025-10-13 16:26:41] 2025-10-13 14:25:39,094 | INFO     | will attempt to kill all subprocesses of pid=2090210
[2025-10-13 16:26:41] 2025-10-13 14:25:39,174 | INFO     | process IDs to be killed: [2090210] (in reverse order)
[2025-10-13 16:26:41] 2025-10-13 14:25:39,210 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 16:26:41] 2025-10-13 14:25:39,210 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 16:26:41] 2025-10-13 14:25:39,212 | INFO     | did not find any defunct processes belonging to 2090210
[2025-10-13 16:26:41] 2025-10-13 14:25:39,214 | INFO     | did not find any defunct processes belonging to 2090210
[2025-10-13 16:26:41] 2025-10-13 14:25:39,214 | INFO     | ready for new job
[2025-10-13 16:26:41] 2025-10-13 14:25:39,214 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 16:26:41] 2025-10-13 14:25:39,215 | INFO     | ***************************************
[2025-10-13 16:26:41] 2025-10-13 14:25:39,215 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 16:26:41] 2025-10-13 14:25:39,215 | INFO     | ***************************************
[2025-10-13 16:26:41] 2025-10-13 14:25:39,216 | INFO     | 
[2025-10-13 16:26:41] 2025-10-13 14:25:39,216 | INFO     | architecture information:
[2025-10-13 16:26:41] 2025-10-13 14:25:39,217 | INFO     | executing command: cat /etc/os-release
[2025-10-13 16:26:41] 2025-10-13 14:25:39,228 | INFO     | cat /etc/os-release:
[2025-10-13 16:26:41] NAME="CentOS Linux"
[2025-10-13 16:26:41] VERSION="7 (Core)"
[2025-10-13 16:26:41] ID="centos"
[2025-10-13 16:26:41] ID_LIKE="rhel fedora"
[2025-10-13 16:26:41] VERSION_ID="7"
[2025-10-13 16:26:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 16:26:41] ANSI_COLOR="0;31"
[2025-10-13 16:26:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 16:26:41] HOME_URL="https://www.centos.org/"
[2025-10-13 16:26:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 16:26:41] 
[2025-10-13 16:26:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 16:26:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 16:26:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 16:26:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 16:26:41] 
[2025-10-13 16:26:41] 2025-10-13 14:25:39,228 | INFO     | ***************************************
[2025-10-13 16:26:41] 2025-10-13 14:25:39,731 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-13 16:26:41] 2025-10-13 14:25:39,745 | INFO     | sufficient remaining disk space (232803794944 B)
[2025-10-13 16:26:41] 2025-10-13 14:25:39,746 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 16:26:41] 2025-10-13 14:25:39,746 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 16:26:41] 2025-10-13 14:25:39,746 | INFO     | update_server=False
[2025-10-13 16:26:41] 2025-10-13 14:25:39,746 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 16:26:41] 2025-10-13 14:25:39,746 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:26:41] 2025-10-13 14:25:39,837 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 16:26:41] 2025-10-13 14:25:39,837 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 16:26:41] 2025-10-13 14:25:39,838 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:26:41] 2025-10-13 14:25:39,838 | INFO     | will abort loop
[2025-10-13 16:26:41] 2025-10-13 14:25:40,074 | INFO     | all payload control threads have been joined
[2025-10-13 16:26:41] 2025-10-13 14:25:40,078 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 16:26:41] 2025-10-13 14:25:40,112 | INFO     | all job control threads have been joined
[2025-10-13 16:26:41] 2025-10-13 14:25:40,288 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 16:26:41] 2025-10-13 14:25:40,391 | INFO     | all data control threads have been joined
[2025-10-13 16:26:41] 2025-10-13 14:25:40,751 | INFO     | [job] retrieve thread has finished
[2025-10-13 16:26:41] 2025-10-13 14:25:40,752 | INFO     | [job] queue monitor thread has finished
[2025-10-13 16:26:41] 2025-10-13 14:25:40,843 | INFO     | [job] job monitor thread has finished
[2025-10-13 16:26:41] 2025-10-13 14:25:41,016 | INFO     | [payload] validate_post thread has finished
[2025-10-13 16:26:41] 2025-10-13 14:25:41,079 | INFO     | [payload] control thread has finished
[2025-10-13 16:26:41] 2025-10-13 14:25:41,117 | INFO     | [job] control thread has finished
[2025-10-13 16:26:41] 2025-10-13 14:25:41,125 | INFO     | [payload] failed_post thread has finished
[2025-10-13 16:26:41] 2025-10-13 14:25:41,397 | INFO     | [data] control thread has finished
[2025-10-13 16:26:41] 2025-10-13 14:25:41,569 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 16:26:41] 2025-10-13 14:25:41,646 | INFO     | [job] validate thread has finished
[2025-10-13 16:26:41] 2025-10-13 14:25:41,773 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 16:26:41] 2025-10-13 14:25:41,820 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 16:26:41] 2025-10-13 14:25:41,873 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 16:26:41] 2025-10-13 14:25:42,083 | INFO     | [data] copytool_out thread has finished
[2025-10-13 16:26:41] 2025-10-13 14:25:42,243 | INFO     | [data] copytool_in thread has finished
[2025-10-13 16:26:41] 2025-10-13 14:25:44,294 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 16:26:41] 2025-10-13 14:26:10,289 | INFO     | PID=2082789 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 16:26:41] 2025-10-13 14:26:10,290 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 16:26:41] 2025-10-13 14:26:10,290 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 16:26:41] 2025-10-13 14:26:10,290 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 16:26:41] 2025-10-13 14:26:34,599 | INFO     | [monitor] cgroup control has ended
[2025-10-13 16:26:41] 2025-10-13 14:26:35,844 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140507932407616)>', '<ExcThread(monitor, started 140507523028736)>']
[2025-10-13 16:26:41] 2025-10-13 14:26:36,421 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 16:26:41] 2025-10-13 14:26:36,422 | INFO     | [monitor] control thread has ended
[2025-10-13 16:26:41] 2025-10-13 14:26:40,869 | INFO     | all workflow threads have been joined
[2025-10-13 16:26:41] 2025-10-13 14:26:40,869 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 16:26:41] 2025-10-13 14:26:40,870 | INFO     | traces error code: 0
[2025-10-13 16:26:41] 2025-10-13 14:26:40,870 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 16:26:41] 2025-10-13 14:26:40,965 [wrapper] ==== pilot stdout END ====
[2025-10-13 16:26:41] 2025-10-13 14:26:40,968 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 16:26:41] 2025-10-13 14:26:40,970 [wrapper] pilotpid: 2082789
[2025-10-13 16:26:41] 2025-10-13 14:26:40,973 [wrapper] Pilot exit status: 0
[2025-10-13 16:26:41] 2025-10-13 14:26:40,981 [wrapper] pandaids: 6840429728
[2025-10-13 16:26:41] 2025-10-13 14:26:41,006 [wrapper] cleanup supervisor_pilot 2102462 2082790
[2025-10-13 16:26:41] 2025-10-13 14:26:41,009 [wrapper] Test setup, not cleaning
[2025-10-13 16:26:41] 2025-10-13 14:26:41,011 [wrapper] apfmon messages muted
[2025-10-13 16:26:41] 2025-10-13 14:26:41,013 [wrapper] ==== wrapper stdout END ====
[2025-10-13 16:26:41] 2025-10-13 14:26:41,015 [wrapper] ==== wrapper stderr END ====
[2025-10-13 16:26:41]  *** Error codes and diagnostics ***
[2025-10-13 16:26:41]     "exeErrorCode": 0,
[2025-10-13 16:26:41]     "exeErrorDiag": "",
[2025-10-13 16:26:41]     "pilotErrorCode": 0,
[2025-10-13 16:26:41]     "pilotErrorDiag": "",
[2025-10-13 16:26:41]  *** Listing of results directory ***
[2025-10-13 16:26:41] total 415760
[2025-10-13 16:26:41] -rw-r--r-- 1 boinc boinc    557409 Oct 12 19:17 pilot3.tar.gz
[2025-10-13 16:26:41] -rwx------ 1 boinc boinc     36292 Oct 12 19:24 runpilot2-wrapper.sh
[2025-10-13 16:26:41] -rw-r--r-- 1 boinc boinc      5112 Oct 12 19:24 queuedata.json
[2025-10-13 16:26:41] -rw-r--r-- 1 boinc boinc       100 Oct 13 15:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 16:26:41] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 15:37 run_atlas
[2025-10-13 16:26:41] -rw-r--r-- 1 boinc boinc       105 Oct 13 15:37 job.xml
[2025-10-13 16:26:41] -rw-r--r-- 2 boinc boinc 221605393 Oct 13 15:37 EVNT.46676267._004818.pool.root.1
[2025-10-13 16:26:41] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:37 start_atlas.sh
[2025-10-13 16:26:41] drwxrwx--x 2 boinc boinc        68 Oct 13 15:37 shared
[2025-10-13 16:26:41] -rw-r--r-- 2 boinc boinc    569675 Oct 13 15:37 input.tar.gz
[2025-10-13 16:26:41] -rw-r--r-- 1 boinc boinc      6533 Oct 13 15:37 init_data.xml
[2025-10-13 16:26:41] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:37 boinc_lockfile
[2025-10-13 16:26:41] -rw-r--r-- 1 boinc boinc      2549 Oct 13 15:37 pandaJob.out
[2025-10-13 16:26:41] -rw------- 1 boinc boinc    972489 Oct 13 15:37 agis_schedconf.cvmfs.json
[2025-10-13 16:26:41] -rw------- 1 boinc boinc   1560580 Oct 13 15:37 agis_ddmendpoints.agis.ALL.json
[2025-10-13 16:26:41] drwx------ 5 boinc boinc      4096 Oct 13 15:37 pilot3
[2025-10-13 16:26:41] -rw------- 1 boinc boinc 198623132 Oct 13 16:24 HITS.46676269._084841.pool.root.1
[2025-10-13 16:26:41] -rw------- 1 boinc boinc      1017 Oct 13 16:25 memory_monitor_summary.json
[2025-10-13 16:26:41] -rw-r--r-- 1 boinc boinc       529 Oct 13 16:25 boinc_task_state.xml
[2025-10-13 16:26:41] -rw------- 1 boinc boinc    369060 Oct 13 16:25 log.46676269._084841.job.log.tgz.1
[2025-10-13 16:26:41] -rw------- 1 boinc boinc      7798 Oct 13 16:25 heartbeat.json
[2025-10-13 16:26:41] -rw------- 1 boinc boinc        95 Oct 13 16:26 pilot_heartbeat.json
[2025-10-13 16:26:41] -rw-r--r-- 1 boinc boinc      8192 Oct 13 16:26 boinc_mmap_file
[2025-10-13 16:26:41] -rw-r--r-- 1 boinc boinc        27 Oct 13 16:26 wrapper_checkpoint.txt
[2025-10-13 16:26:41] -rw------- 1 boinc boinc      4935 Oct 13 16:26 pilotlog.txt
[2025-10-13 16:26:41] -rw------- 1 boinc boinc    444078 Oct 13 16:26 log.46676269._084841.job.log.1
[2025-10-13 16:26:41] -rw------- 1 boinc boinc       357 Oct 13 16:26 output.list
[2025-10-13 16:26:41] -rw-r--r-- 1 boinc boinc       620 Oct 13 16:26 runtime_log
[2025-10-13 16:26:41] -rw------- 1 boinc boinc    829440 Oct 13 16:26 result.tar.gz
[2025-10-13 16:26:41] -rw------- 1 boinc boinc       655 Oct 13 16:26 s3xKDmNzES8n9Rq4apOajLDm4fhM0noT9bVof3QYDmFVUMDmBoK8bm.diag
[2025-10-13 16:26:41] -rw-r--r-- 1 boinc boinc      8727 Oct 13 16:26 runtime_log.err
[2025-10-13 16:26:41] -rw-r--r-- 1 boinc boinc     22696 Oct 13 16:26 stderr.txt
[2025-10-13 16:26:41] HITS file was successfully produced:
[2025-10-13 16:26:41] -rw------- 1 boinc boinc 198623132 Oct 13 16:24 shared/HITS.pool.root.1
[2025-10-13 16:26:41]  *** Contents of shared directory: ***
[2025-10-13 16:26:41] total 411768
[2025-10-13 16:26:41] -rw-r--r-- 2 boinc boinc 221605393 Oct 13 15:37 ATLAS.root_0
[2025-10-13 16:26:41] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:37 start_atlas.sh
[2025-10-13 16:26:41] -rw-r--r-- 2 boinc boinc    569675 Oct 13 15:37 input.tar.gz
[2025-10-13 16:26:41] -rw------- 1 boinc boinc 198623132 Oct 13 16:24 HITS.pool.root.1
[2025-10-13 16:26:41] -rw------- 1 boinc boinc    829440 Oct 13 16:26 result.tar.gz
16:26:42 (2078972): run_atlas exited; CPU time 30228.014213
16:26:42 (2078972): called boinc_finish(0)

</stderr_txt>
]]>

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