Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 00:44:11 (6436): vboxwrapper version 26210
2025-10-13 00:44:11 (6436): BOINC client version: 8.2.4
2025-10-13 00:44:11 (6436): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-10-13 00:44:12 (6436): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 00:44:12 (6436): Create VM. (boinc_6d2f01a7638671ac, slot#0)
2025-10-13 00:44:12 (6436): Setting Memory Size for VM. (4400MB)
2025-10-13 00:44:13 (6436): Setting CPU Count for VM. (4)
2025-10-13 00:44:13 (6436): Setting Chipset Options for VM.
2025-10-13 00:44:13 (6436): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 00:44:13 (6436): Setting Boot Options for VM.
2025-10-13 00:44:14 (6436): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 00:44:14 (6436): Enabling VM Network Access.
2025-10-13 00:44:15 (6436): Disabling USB Support for VM.
2025-10-13 00:44:15 (6436): Disabling COM Port Support for VM.
2025-10-13 00:44:15 (6436): Disabling LPT Port Support for VM.
2025-10-13 00:44:15 (6436): Disabling Audio Support for VM.
2025-10-13 00:44:16 (6436): Disabling Clipboard Support for VM.
2025-10-13 00:44:16 (6436): Disabling Drag and Drop Support for VM.
2025-10-13 00:44:16 (6436): Adding storage controller(s) to VM.
2025-10-13 00:44:16 (6436): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 00:44:18 (6436): Adding VirtualBox Guest Additions to VM.
2025-10-13 00:44:19 (6436): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 00:44:19 (6436): forwarding host port 63446 to guest port 80
2025-10-13 00:44:19 (6436): Enabling remote desktop for VM.
2025-10-13 00:44:20 (6436): Enabling shared directory for VM.
2025-10-13 00:44:21 (6436): Starting VM using VBoxManage interface. (boinc_6d2f01a7638671ac, slot#0)
2025-10-13 00:44:26 (6436): Successfully started VM. (PID = '13900')
2025-10-13 00:44:26 (6436): Reporting VM Process ID to BOINC.
2025-10-13 00:44:26 (6436): Guest Log: BIOS: VirtualBox 7.1.12
2025-10-13 00:44:26 (6436): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 00:44:26 (6436): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 00:44:26 (6436): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 00:44:26 (6436): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 00:44:26 (6436): Detected: Web Application Enabled (http://localhost:63446)
2025-10-13 00:44:26 (6436): Detected: Remote Desktop Enabled (localhost:63447)
2025-10-13 00:44:26 (6436): Preference change detected
2025-10-13 00:44:26 (6436): Setting CPU throttle for VM. (100%)
2025-10-13 00:44:27 (6436): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 00:44:28 (6436): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 00:44:28 (6436): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 00:44:31 (6436): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 00:44:31 (6436): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 00:44:31 (6436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 00:44:37 (6436): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 00:44:37 (6436): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-13 00:44:45 (6436): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 00:44:45 (6436): Guest Log: 00:00:00.000143 main     Log opened 2025-10-13T00:44:43.233971000Z
2025-10-13 00:44:45 (6436): Guest Log: 00:00:00.000251 main     OS Product: Linux
2025-10-13 00:44:45 (6436): Guest Log: 00:00:00.000285 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 00:44:45 (6436): Guest Log: 00:00:00.000316 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 00:44:45 (6436): Guest Log: 00:00:00.000347 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 00:44:45 (6436): Guest Log: 00:00:00.000348 main     Process ID: 1316
2025-10-13 00:44:45 (6436): Guest Log: 00:00:00.000349 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 00:44:45 (6436): Guest Log: 00:00:00.001427 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 00:44:45 (6436): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 00:44:45 (6436): Guest Log: [INFO] Mounting shared directory
2025-10-13 00:44:45 (6436): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 00:44:50 (6436): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 00:44:50 (6436): Guest Log: [INFO] Detected branch: prod
2025-10-13 00:44:51 (6436): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 00:44:51 (6436): Guest Log: Copying input files
2025-10-13 00:44:52 (6436): Guest Log: Copied input files into RunAtlas.
2025-10-13 00:44:52 (6436): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-13 00:44:52 (6436): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-13 00:44:52 (6436): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-13 00:44:52 (6436): Guest Log: Further information can be found at the LHC@home message board.
2025-10-13 00:44:55 (6436): Guest Log: 00:00:10.005734 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 187 894 588 000ns (GuestNow=1 760 309 095 342 455 000 ns GuestLast=1 760 316 283 237 043 000 ns fSetTimeLastLoop=true )
2025-10-13 00:45:02 (6436): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 00:45:02 (6436): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 00:45:02 (6436): Guest Log: 2.6.3.0 1592 0 32184 151640 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-13 00:45:03 (6436): Guest Log: copied the webapp to /var/www
2025-10-13 00:45:03 (6436): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-13 00:45:03 (6436): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-13 00:45:03 (6436): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 00:45:03 (6436): Guest Log:  *** Starting ATLAS job. (PandaID=6840750195 taskID=46676269) ***
2025-10-13 02:28:45 (6436): Status Report: Elapsed Time: '6000.183031'
2025-10-13 02:28:45 (6436): Status Report: CPU Time: '18453.312500'
2025-10-13 04:12:38 (6436): Status Report: Elapsed Time: '12001.050873'
2025-10-13 04:12:38 (6436): Status Report: CPU Time: '40456.187500'
2025-10-13 05:56:24 (6436): Status Report: Elapsed Time: '18001.430025'
2025-10-13 05:56:24 (6436): Status Report: CPU Time: '64129.203125'
2025-10-13 06:03:45 (6436): Guest Log:  *** Job finished ***
2025-10-13 06:03:45 (6436): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:22,212 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:22,212 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:31,718 | INFO     | [monitor] cgroup control has ended
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:32,519 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139974953563968)>', '<ExcThread(monitor, started 139973789480704)>']
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:33,444 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:33,444 | INFO     | [monitor] control thread has ended
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:37,687 | INFO     | all workflow threads have been joined
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:37,687 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:37,687 | INFO     | traces error code: 0
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:37,687 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:37,799 [wrapper] ==== pilot stdout END ====
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:37,804 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:37,809 [wrapper] pilotpid: 5988
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:37,813 [wrapper] Pilot exit status: 0
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:37,949 [wrapper] pandaids: 6840750195
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:37,992 [wrapper] cleanup supervisor_pilot 21409 5989
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:37,997 [wrapper] Test setup, not cleaning
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:38,002 [wrapper] apfmon messages muted
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:38,007 [wrapper] ==== wrapper stdout END ====
2025-10-13 06:03:45 (6436): Guest Log: 2025-10-13 04:03:38,012 [wrapper] ==== wrapper stderr END ====
2025-10-13 06:03:45 (6436): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 06:03:45 (6436): Guest Log:     "exeErrorCode": 0,
2025-10-13 06:03:45 (6436): Guest Log:     "exeErrorDiag": "",
2025-10-13 06:03:45 (6436): Guest Log:     "pilotErrorCode": 0,
2025-10-13 06:03:45 (6436): Guest Log:     "pilotErrorDiag": "",
2025-10-13 06:03:45 (6436): Guest Log:  *** Listing of results directory ***
2025-10-13 06:03:45 (6436): Guest Log: total 199968
2025-10-13 06:03:45 (6436): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 20:55 pilot3.tar.gz
2025-10-13 06:03:45 (6436): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 21:10 queuedata.json
2025-10-13 06:03:45 (6436): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 21:11 runpilot2-wrapper.sh
2025-10-13 06:03:45 (6436): Guest Log: -rwxr-xr-x. 1 atlas atlas      8307 Oct 12 22:44 init_data.xml
2025-10-13 06:03:45 (6436): Guest Log: -rwxr-xr-x. 1 atlas atlas    569681 Oct 12 22:44 input.tar.gz
2025-10-13 06:03:45 (6436): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 12 22:44 start_atlas.sh
2025-10-13 06:03:45 (6436): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 22:44 EVNT.46676267._004773.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 06:03:45 (6436): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 12 22:45 pandaJob.out
2025-10-13 06:03:45 (6436): Guest Log: -rw-------. 1 atlas atlas    975603 Oct 12 22:46 agis_schedconf.cvmfs.json
2025-10-13 06:03:45 (6436): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 22:46 pilot3
2025-10-13 06:03:45 (6436): Guest Log: -rw-------. 1 atlas atlas 195053303 Oct 13 04:01 HITS.46676269._089574.pool.root.1
2025-10-13 06:03:45 (6436): Guest Log: -rw-------. 1 atlas atlas      1033 Oct 13 04:02 memory_monitor_summary.json
2025-10-13 06:03:45 (6436): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 04:02 agis_ddmendpoints.agis.ALL.json
2025-10-13 06:03:45 (6436): Guest Log: -rw-------. 1 atlas atlas    445397 Oct 13 04:02 log.46676269._089574.job.log.tgz.1
2025-10-13 06:03:45 (6436): Guest Log: -rw-------. 1 atlas atlas      7791 Oct 13 04:02 heartbeat.json
2025-10-13 06:03:45 (6436): Guest Log: -rw-------. 1 atlas atlas        95 Oct 13 04:03 pilot_heartbeat.json
2025-10-13 06:03:45 (6436): Guest Log: -rw-------. 1 atlas atlas      5063 Oct 13 04:03 pilotlog.txt
2025-10-13 06:03:45 (6436): Guest Log: -rw-------. 1 atlas atlas   2490938 Oct 13 04:03 log.46676269._089574.job.log.1
2025-10-13 06:03:45 (6436): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 04:03 output.list
2025-10-13 06:03:45 (6436): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 04:03 runtime_log
2025-10-13 06:03:45 (6436): Guest Log: -rw-------. 1 atlas atlas   2959360 Oct 13 04:03 result.tar.gz
2025-10-13 06:03:45 (6436): Guest Log: -rw-r--r--. 1 atlas atlas      8648 Oct 13 04:03 runtime_log.err
2025-10-13 06:03:45 (6436): Guest Log: -rw-------. 1 atlas atlas       664 Oct 13 04:03 au0KDmmWIS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmaalNDmF4bu2m.diag
2025-10-13 06:03:45 (6436): Guest Log: Looking for outputfile HITS.46676269._089574.pool.root.1
2025-10-13 06:03:45 (6436): Guest Log: HITS file was successfully produced
2025-10-13 06:03:45 (6436): Guest Log: -rw-------. 1 atlas atlas 195053303 Oct 13 04:01 /home/atlas/RunAtlas/HITS.46676269._089574.pool.root.1
2025-10-13 06:03:46 (6436): Guest Log: Successfully finished the ATLAS job!
2025-10-13 06:03:46 (6436): Guest Log: Copying the results back to the shared directory!
2025-10-13 06:03:46 (6436): Guest Log:  *** Contents of shared directory: ***
2025-10-13 06:03:46 (6436): Guest Log: total 408828
2025-10-13 06:03:46 (6436): Guest Log: -rwxrwxrwx. 1 root root 220019635 Oct 12 22:44 ATLAS.root_0
2025-10-13 06:03:46 (6436): Guest Log: -rwxrwxrwx. 1 root root 195053303 Oct 13 04:03 HITS.pool.root.1
2025-10-13 06:03:46 (6436): Guest Log: -rwxrwxrwx. 1 root root      8307 Oct 12 22:44 init_data.xml
2025-10-13 06:03:46 (6436): Guest Log: -rwxrwxrwx. 1 root root    569681 Oct 12 22:43 input.tar.gz
2025-10-13 06:03:46 (6436): Guest Log: -rwxrwxrwx. 1 root root   2959360 Oct 13 04:03 result.tar.gz
2025-10-13 06:03:46 (6436): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 22:43 start_atlas.sh
2025-10-13 06:03:46 (6436): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 06:03:46 (6436): VM Completion File Detected.
2025-10-13 06:03:46 (6436): Powering off VM.
2025-10-13 06:03:47 (6436): Successfully stopped VM.
2025-10-13 06:03:47 (6436): Deregistering VM. (boinc_6d2f01a7638671ac, slot#0)
2025-10-13 06:03:47 (6436): Removing network bandwidth throttle group from VM.
2025-10-13 06:03:48 (6436): Removing VM from VirtualBox.
2025-10-13 06:03:53 (6436): called boinc_finish(0)

</stderr_txt>
]]>

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