Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:13:19 (3410616): wrapper (7.7.26015): starting
10:13:19 (3410616): wrapper: running run_atlas (--nthreads 4)
[2025-10-14 10:13:19] Arguments: --nthreads 4
[2025-10-14 10:13:19] Threads: 4
[2025-10-14 10:13:19] Checking for CVMFS
[2025-10-14 10:13:19] No cvmfs_config command found, will try listing directly
[2025-10-14 10:13:19] CVMFS is ok
[2025-10-14 10:13:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-14 10:13:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-14 10:13:19] Further information can be found at the LHC@home message board.
[2025-10-14 10:13:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 10:13:19] Checking for apptainer binary...
[2025-10-14 10:13:19] which: no apptainer in ((null))
[2025-10-14 10:13:19] apptainer is not installed, using version from CVMFS
[2025-10-14 10:13:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 10:13:19] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot104/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-10-14 10:13:19] apptainer works
[2025-10-14 10:13:19] Set ATHENA_PROC_NUMBER=4
[2025-10-14 10:13:19] Set ATHENA_CORE_NUMBER=4
[2025-10-14 10:13:19] Starting ATLAS job with PandaID=6840538113
[2025-10-14 10:13:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot104/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 13:11:34]  *** The last 200 lines of the pilot log: ***
[2025-10-14 13:11:34] 2025-10-14 10:53:18,948 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 13:11:34] 2025-10-14 10:53:18,948 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 13:11:34] 2025-10-14 10:53:18,952 | INFO     | fitting pss+swap vs Time
[2025-10-14 13:11:34] 2025-10-14 10:53:18,952 | INFO     | sum of square deviations: 1199940638.0
[2025-10-14 13:11:34] 2025-10-14 10:53:18,953 | INFO     | sum of deviations: 12093190159.000002
[2025-10-14 13:11:34] 2025-10-14 10:53:18,953 | INFO     | mean x: 1760434404.0
[2025-10-14 13:11:34] 2025-10-14 10:53:18,953 | INFO     | mean y: 2292254.050955414
[2025-10-14 13:11:34] 2025-10-14 10:53:18,953 | INFO     | -- intersect: -17739642084.88576
[2025-10-14 13:11:34] 2025-10-14 10:53:18,953 | INFO     | intersect: -17739642084.88576
[2025-10-14 13:11:34] 2025-10-14 10:53:18,954 | INFO     | chi2: 1.876886194130904
[2025-10-14 13:11:34] 2025-10-14 10:53:18,954 | INFO     | sum of square deviations: 1088905998.0
[2025-10-14 13:11:34] 2025-10-14 10:53:18,955 | INFO     | sum of deviations: 20319494303.999996
[2025-10-14 13:11:34] 2025-10-14 10:53:18,955 | INFO     | mean x: 1760434251.5
[2025-10-14 13:11:34] 2025-10-14 10:53:18,955 | INFO     | mean y: 2303232.197368421
[2025-10-14 13:11:34] 2025-10-14 10:53:18,955 | INFO     | -- intersect: -32848221800.837433
[2025-10-14 13:11:34] 2025-10-14 10:53:18,955 | INFO     | intersect: -32848221800.837433
[2025-10-14 13:11:34] 2025-10-14 10:53:18,955 | INFO     | chi2: 1.2043246687672033
[2025-10-14 13:11:34] 2025-10-14 10:53:18,955 | INFO     | current chi2=1.2043246687672033 (change=35.833900183550114 %)
[2025-10-14 13:11:34] 2025-10-14 10:53:18,956 | INFO     | sum of square deviations: 984941258.0
[2025-10-14 13:11:34] 2025-10-14 10:53:18,957 | INFO     | sum of deviations: 19375427743.0
[2025-10-14 13:11:34] 2025-10-14 10:53:18,957 | INFO     | mean x: 1760434099.0
[2025-10-14 13:11:34] 2025-10-14 10:53:18,957 | INFO     | mean y: 2301847.9795918367
[2025-10-14 13:11:34] 2025-10-14 10:53:18,957 | INFO     | -- intersect: -34628355974.954056
[2025-10-14 13:11:34] 2025-10-14 10:53:18,957 | INFO     | intersect: -34628355974.954056
[2025-10-14 13:11:34] 2025-10-14 10:53:18,957 | INFO     | chi2: 1.2052945218086217
[2025-10-14 13:11:34] 2025-10-14 10:53:18,957 | INFO     | current chi2=1.2052945218086217 (change=-0.08053086236381515 %)
[2025-10-14 13:11:34] 2025-10-14 10:53:18,957 | INFO     | right removable region: 146
[2025-10-14 13:11:34] 2025-10-14 10:53:18,958 | INFO     | sum of square deviations: 1088905998.0
[2025-10-14 13:11:34] 2025-10-14 10:53:18,958 | INFO     | sum of deviations: -6051001445.0
[2025-10-14 13:11:34] 2025-10-14 10:53:18,959 | INFO     | mean x: 1760434556.5
[2025-10-14 13:11:34] 2025-10-14 10:53:18,959 | INFO     | mean y: 2316749.75
[2025-10-14 13:11:34] 2025-10-14 10:53:18,959 | INFO     | -- intersect: 9784972061.388237
[2025-10-14 13:11:34] 2025-10-14 10:53:18,959 | INFO     | intersect: 9784972061.388237
[2025-10-14 13:11:34] 2025-10-14 10:53:18,959 | INFO     | chi2: 0.6919621798658353
[2025-10-14 13:11:34] 2025-10-14 10:53:18,959 | INFO     | current chi2=0.6919621798658353 (change=63.132438075913825 %)
[2025-10-14 13:11:34] 2025-10-14 10:53:18,959 | INFO     | sum of square deviations: 984941258.0
[2025-10-14 13:11:34] 2025-10-14 10:53:18,960 | INFO     | sum of deviations: -6517323448.0
[2025-10-14 13:11:34] 2025-10-14 10:53:18,960 | INFO     | mean x: 1760434709.0
[2025-10-14 13:11:34] 2025-10-14 10:53:18,960 | INFO     | mean y: 2317429.31292517
[2025-10-14 13:11:34] 2025-10-14 10:53:18,961 | INFO     | -- intersect: 11651055173.263496
[2025-10-14 13:11:34] 2025-10-14 10:53:18,961 | INFO     | intersect: 11651055173.263496
[2025-10-14 13:11:34] 2025-10-14 10:53:18,961 | INFO     | chi2: 0.6916433221892913
[2025-10-14 13:11:34] 2025-10-14 10:53:18,961 | INFO     | current chi2=0.6916433221892913 (change=0.04608021736186104 %)
[2025-10-14 13:11:34] 2025-10-14 10:53:18,961 | INFO     | left removable region: 20
[2025-10-14 13:11:34] 2025-10-14 10:53:18,961 | INFO     | sum of square deviations: 620244187.5
[2025-10-14 13:11:34] 2025-10-14 10:53:18,962 | INFO     | sum of deviations: 819370513.5
[2025-10-14 13:11:34] 2025-10-14 10:53:18,962 | INFO     | mean x: 1760434678.5
[2025-10-14 13:11:34] 2025-10-14 10:53:18,962 | INFO     | mean y: 2330638.198412698
[2025-10-14 13:11:34] 2025-10-14 10:53:18,962 | INFO     | -- intersect: -2323282879.148338
[2025-10-14 13:11:34] 2025-10-14 10:53:18,962 | INFO     | intersect: -2323282879.148338
[2025-10-14 13:11:34] 2025-10-14 10:53:18,963 | INFO     | chi2: 0.0005308989852156702
[2025-10-14 13:11:34] 2025-10-14 10:53:18,963 | INFO     | -- intersect: -2323282879.148338
[2025-10-14 13:11:34] 2025-10-14 10:53:18,963 | INFO     | current memory leak: 1.32 B/s (using 126 data points, chi2=0.00)
[2025-10-14 13:11:34] 2025-10-14 10:53:18,963 | INFO     | could have reported an average CPU frequency of 2715 MHz (9 samples)
[2025-10-14 13:11:34] 2025-10-14 10:53:18,964 | INFO     | ..............................
[2025-10-14 13:11:34] 2025-10-14 10:53:18,964 | INFO     | . Timing measurements:
[2025-10-14 13:11:34] 2025-10-14 10:53:18,964 | INFO     | . get job = 0 s
[2025-10-14 13:11:34] 2025-10-14 10:53:18,964 | INFO     | . initial setup = 1 s
[2025-10-14 13:11:34] 2025-10-14 10:53:18,964 | INFO     | . payload setup = 8 s
[2025-10-14 13:11:34] 2025-10-14 10:53:18,964 | INFO     | . stage-in = 0 s
[2025-10-14 13:11:34] 2025-10-14 10:53:18,964 | INFO     | . payload execution = 9547 s
[2025-10-14 13:11:34] 2025-10-14 10:53:18,964 | INFO     | . stage-out = 0 s
[2025-10-14 13:11:34] 2025-10-14 10:53:18,964 | INFO     | . log creation = 0 s
[2025-10-14 13:11:34] 2025-10-14 10:53:18,964 | INFO     | ..............................
[2025-10-14 13:11:34] 2025-10-14 10:53:19,064 | INFO     | 
[2025-10-14 13:11:34] 2025-10-14 10:53:19,064 | INFO     | job summary report
[2025-10-14 13:11:34] 2025-10-14 10:53:19,064 | INFO     | --------------------------------------------------
[2025-10-14 13:11:34] 2025-10-14 10:53:19,065 | INFO     | PanDA job id: 6840538113
[2025-10-14 13:11:34] 2025-10-14 10:53:19,065 | INFO     | task id: 46676269
[2025-10-14 13:11:34] 2025-10-14 10:53:19,065 | INFO     | errors: (none)
[2025-10-14 13:11:34] 2025-10-14 10:53:19,065 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 13:11:34] 2025-10-14 10:53:19,065 | INFO     | pilot state: finished 
[2025-10-14 13:11:34] 2025-10-14 10:53:19,065 | INFO     | transexitcode: 0
[2025-10-14 13:11:34] 2025-10-14 10:53:19,065 | INFO     | exeerrorcode: 0
[2025-10-14 13:11:34] 2025-10-14 10:53:19,065 | INFO     | exeerrordiag: 
[2025-10-14 13:11:34] 2025-10-14 10:53:19,065 | INFO     | exitcode: 0
[2025-10-14 13:11:34] 2025-10-14 10:53:19,065 | INFO     | exitmsg: OK
[2025-10-14 13:11:34] 2025-10-14 10:53:19,065 | INFO     | cpuconsumptiontime: 36657 s
[2025-10-14 13:11:34] 2025-10-14 10:53:19,066 | INFO     | nevents: 400
[2025-10-14 13:11:34] 2025-10-14 10:53:19,066 | INFO     | neventsw: 0
[2025-10-14 13:11:34] 2025-10-14 10:53:19,066 | INFO     | pid: 3480253
[2025-10-14 13:11:34] 2025-10-14 10:53:19,066 | INFO     | pgrp: 3480253
[2025-10-14 13:11:34] 2025-10-14 10:53:19,066 | INFO     | corecount: 4
[2025-10-14 13:11:34] 2025-10-14 10:53:19,066 | INFO     | event service: False
[2025-10-14 13:11:34] 2025-10-14 10:53:19,066 | INFO     | sizes: {0: 2348869, 6: 2349131, 11: 2349159, 9559: 2378239, 9560: 2387261, 9561: 2387317, 9568: 2387703}
[2025-10-14 13:11:34] 2025-10-14 10:53:19,066 | INFO     | --------------------------------------------------
[2025-10-14 13:11:34] 2025-10-14 10:53:19,066 | INFO     | 
[2025-10-14 13:11:34] 2025-10-14 10:53:19,066 | INFO     | executing command: ls -lF /scratch/boinc/var/slot104/slots/0
[2025-10-14 13:11:34] 2025-10-14 10:53:19,097 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,097 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,097 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,097 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,097 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,098 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,098 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,098 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,098 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,098 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,098 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,098 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,098 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,098 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,098 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,098 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,099 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,099 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 13:11:34] 2025-10-14 10:53:19,099 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,099 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 13:11:34] 2025-10-14 10:53:19,099 | INFO     | job 6840538113 has completed (purged errors)
[2025-10-14 13:11:34] 2025-10-14 10:53:19,099 | INFO     | overall cleanup function is called
[2025-10-14 13:11:34] 2025-10-14 10:53:20,108 | INFO     | --- collectZombieJob: --- 10, [3480253]
[2025-10-14 13:11:34] 2025-10-14 10:53:20,108 | INFO     | zombie collector waiting for pid 3480253
[2025-10-14 13:11:34] 2025-10-14 10:53:20,109 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 13:11:34] 2025-10-14 10:53:20,109 | INFO     | collected zombie processes
[2025-10-14 13:11:34] 2025-10-14 10:53:20,109 | INFO     | will attempt to kill all subprocesses of pid=3480253
[2025-10-14 13:11:34] 2025-10-14 10:53:20,819 | INFO     | process IDs to be killed: [3480253] (in reverse order)
[2025-10-14 13:11:34] 2025-10-14 10:53:21,068 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 13:11:34] 2025-10-14 10:53:21,069 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 13:11:34] 2025-10-14 10:53:21,101 | INFO     | did not find any defunct processes belonging to 3480253
[2025-10-14 13:11:34] 2025-10-14 10:53:21,128 | INFO     | did not find any defunct processes belonging to 3480253
[2025-10-14 13:11:34] 2025-10-14 10:53:21,128 | INFO     | ready for new job
[2025-10-14 13:11:34] 2025-10-14 10:53:21,128 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 13:11:34] 2025-10-14 10:53:21,131 | INFO     | ***************************************
[2025-10-14 13:11:34] 2025-10-14 10:53:21,131 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 13:11:34] 2025-10-14 10:53:21,131 | INFO     | ***************************************
[2025-10-14 13:11:34] 2025-10-14 10:53:21,131 | INFO     | 
[2025-10-14 13:11:34] 2025-10-14 10:53:21,139 | INFO     | architecture information:
[2025-10-14 13:11:34] 2025-10-14 10:53:21,140 | INFO     | executing command: cat /etc/os-release
[2025-10-14 13:11:34] 2025-10-14 10:53:21,165 | INFO     | cat /etc/os-release:
[2025-10-14 13:11:34] NAME="CentOS Linux"
[2025-10-14 13:11:34] VERSION="7 (Core)"
[2025-10-14 13:11:34] ID="centos"
[2025-10-14 13:11:34] ID_LIKE="rhel fedora"
[2025-10-14 13:11:34] VERSION_ID="7"
[2025-10-14 13:11:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 13:11:34] ANSI_COLOR="0;31"
[2025-10-14 13:11:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 13:11:34] HOME_URL="https://www.centos.org/"
[2025-10-14 13:11:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 13:11:34] 
[2025-10-14 13:11:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 13:11:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 13:11:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 13:11:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 13:11:34] 
[2025-10-14 13:11:34] 2025-10-14 10:53:21,166 | INFO     | ***************************************
[2025-10-14 13:11:34] 2025-10-14 10:53:21,669 | INFO     | executing command: df -mP /scratch/boinc/var/slot104/slots/0
[2025-10-14 13:11:34] 2025-10-14 10:53:21,694 | INFO     | sufficient remaining disk space (3355770355712 B)
[2025-10-14 13:11:34] 2025-10-14 10:53:21,694 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 13:11:34] 2025-10-14 10:53:21,694 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 13:11:34] 2025-10-14 10:53:21,695 | INFO     | update_server=False
[2025-10-14 13:11:34] 2025-10-14 10:53:21,695 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 13:11:34] 2025-10-14 10:53:21,781 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 13:11:34] 2025-10-14 10:53:22,191 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 13:11:34] 2025-10-14 10:53:22,192 | INFO     | aborting loop
[2025-10-14 13:11:34] 2025-10-14 10:53:22,296 | INFO     | all data control threads have been joined
[2025-10-14 13:11:34] 2025-10-14 10:53:22,354 | INFO     | all job control threads have been joined
[2025-10-14 13:11:34] 2025-10-14 10:53:22,700 | INFO     | [job] retrieve thread has finished
[2025-10-14 13:11:34] 2025-10-14 10:53:22,785 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 13:11:34] 2025-10-14 10:53:22,786 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 13:11:34] 2025-10-14 10:53:22,843 | INFO     | all payload control threads have been joined
[2025-10-14 13:11:34] 2025-10-14 10:53:23,086 | INFO     | [data] copytool_in thread has finished
[2025-10-14 13:11:34] 2025-10-14 10:53:23,195 | INFO     | [job] job monitor thread has finished
[2025-10-14 13:11:34] 2025-10-14 10:53:23,301 | INFO     | [data] control thread has finished
[2025-10-14 13:11:34] 2025-10-14 10:53:23,356 | INFO     | [job] control thread has finished
[2025-10-14 13:11:34] 2025-10-14 10:53:23,588 | INFO     | [payload] validate_post thread has finished
[2025-10-14 13:11:34] 2025-10-14 10:53:23,669 | INFO     | [job] validate thread has finished
[2025-10-14 13:11:34] 2025-10-14 10:53:23,783 | INFO     | [data] copytool_out thread has finished
[2025-10-14 13:11:34] 2025-10-14 10:53:23,849 | INFO     | [payload] control thread has finished
[2025-10-14 13:11:34] 2025-10-14 10:53:23,955 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 13:11:34] 2025-10-14 10:53:23,982 | INFO     | [payload] failed_post thread has finished
[2025-10-14 13:11:34] 2025-10-14 10:53:24,075 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 13:11:34] 2025-10-14 10:53:24,187 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 13:11:34] 2025-10-14 10:53:25,080 | INFO     | [job] queue monitor thread has finished
[2025-10-14 13:11:34] 2025-10-14 10:53:26,792 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 13:11:34] 2025-10-14 10:53:32,422 | INFO     | job.realtimelogging is not enabled
[2025-10-14 13:11:34] 2025-10-14 10:53:33,427 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 13:11:34] 2025-10-14 10:53:47,996 | INFO     | [monitor] cgroup control has ended
[2025-10-14 13:11:34] 2025-10-14 10:53:48,087 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22568849286976)>', '<ExcThread(monitor, started 22568597657344)>']
[2025-10-14 13:11:34] 2025-10-14 10:53:51,151 | INFO     | PID=3426611 has CPU usage=9.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 13:11:34] 2025-10-14 10:53:51,151 | INFO     | .. there are 9 such processes running
[2025-10-14 13:11:34] 2025-10-14 10:53:51,153 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 13:11:34] 2025-10-14 10:53:51,153 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 13:11:34] 2025-10-14 10:53:51,153 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 13:11:34] 2025-10-14 10:53:51,153 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 13:11:34] 2025-10-14 10:53:51,153 | INFO     | [monitor] control thread has ended
[2025-10-14 13:11:34] 2025-10-14 10:53:53,113 | INFO     | all workflow threads have been joined
[2025-10-14 13:11:34] 2025-10-14 10:53:53,113 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 13:11:34] 2025-10-14 10:53:53,113 | INFO     | traces error code: 0
[2025-10-14 13:11:34] 2025-10-14 10:53:53,114 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 13:11:34] 2025-10-14 10:53:53,323 [wrapper] ==== pilot stdout END ====
[2025-10-14 13:11:34] 2025-10-14 10:53:53,326 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 13:11:34] 2025-10-14 10:53:53,329 [wrapper] pilotpid: 3426611
[2025-10-14 13:11:34] 2025-10-14 10:53:53,332 [wrapper] Pilot exit status: 0
[2025-10-14 13:11:34] 2025-10-14 10:53:53,343 [wrapper] pandaids: 6840538113
[2025-10-14 13:11:34] 2025-10-14 10:53:53,508 [wrapper] cleanup supervisor_pilot 3932610 3426612
[2025-10-14 13:11:34] 2025-10-14 10:53:53,512 [wrapper] Test setup, not cleaning
[2025-10-14 13:11:34] 2025-10-14 10:53:53,516 [wrapper] apfmon messages muted
[2025-10-14 13:11:34] 2025-10-14 10:53:53,520 [wrapper] ==== wrapper stdout END ====
[2025-10-14 13:11:34] 2025-10-14 10:53:53,524 [wrapper] ==== wrapper stderr END ====
[2025-10-14 13:11:34]  *** Error codes and diagnostics ***
[2025-10-14 13:11:34]     "exeErrorCode": 0,
[2025-10-14 13:11:34]     "exeErrorDiag": "",
[2025-10-14 13:11:34]     "pilotErrorCode": 0,
[2025-10-14 13:11:34]     "pilotErrorDiag": "",
[2025-10-14 13:11:34]  *** Listing of results directory ***
[2025-10-14 13:11:34] total 416196
[2025-10-14 13:11:34] -rw-r--r-- 1 boinc boinc    557409 Oct 12 20:53 pilot3.tar.gz
[2025-10-14 13:11:34] -rw-r--r-- 1 boinc boinc      5112 Oct 12 21:03 queuedata.json
[2025-10-14 13:11:34] -rwx------ 1 boinc boinc     36292 Oct 12 21:03 runpilot2-wrapper.sh
[2025-10-14 13:11:34] -rw-r--r-- 1 boinc boinc       100 Oct 14 10:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 13:11:34] -rwxr-xr-x 1 boinc boinc      7986 Oct 14 10:13 run_atlas
[2025-10-14 13:11:34] -rw-r--r-- 1 boinc boinc       105 Oct 14 10:13 job.xml
[2025-10-14 13:11:34] -rw-r--r-- 2 boinc boinc 221435060 Oct 14 10:13 EVNT.46676267._004439.pool.root.1
[2025-10-14 13:11:34] -rw-r--r-- 2 boinc boinc     15120 Oct 14 10:13 start_atlas.sh
[2025-10-14 13:11:34] drwxrwx--x 2 boinc boinc      4096 Oct 14 10:13 shared
[2025-10-14 13:11:34] -rw-r--r-- 2 boinc boinc    569682 Oct 14 10:13 input.tar.gz
[2025-10-14 13:11:34] -rw-r--r-- 1 boinc boinc         0 Oct 14 10:13 boinc_lockfile
[2025-10-14 13:11:34] -rw-r--r-- 1 boinc boinc      2550 Oct 14 10:13 pandaJob.out
[2025-10-14 13:11:34] -rw------- 1 boinc boinc    972807 Oct 14 10:13 agis_schedconf.cvmfs.json
[2025-10-14 13:11:34] -rw------- 1 boinc boinc   1560580 Oct 14 10:13 agis_ddmendpoints.agis.ALL.json
[2025-10-14 13:11:34] drwx------ 5 boinc boinc      4096 Oct 14 10:13 pilot3
[2025-10-14 13:11:34] -rw-r--r-- 1 boinc boinc      6694 Oct 14 11:14 init_data.xml
[2025-10-14 13:11:34] -rw------- 1 boinc boinc 197483940 Oct 14 12:52 HITS.46676269._086985.pool.root.1
[2025-10-14 13:11:34] -rw-r--r-- 1 boinc boinc       528 Oct 14 12:52 boinc_task_state.xml
[2025-10-14 13:11:34] -rw------- 1 boinc boinc      1022 Oct 14 12:53 memory_monitor_summary.json
[2025-10-14 13:11:34] -rw------- 1 boinc boinc    332201 Oct 14 12:53 log.46676269._086985.job.log.tgz.1
[2025-10-14 13:11:34] -rw------- 1 boinc boinc      7779 Oct 14 12:53 heartbeat.json
[2025-10-14 13:11:34] -rw------- 1 boinc boinc        95 Oct 14 12:53 pilot_heartbeat.json
[2025-10-14 13:11:34] -rw------- 1 boinc boinc      4907 Oct 14 12:53 pilotlog.txt
[2025-10-14 13:11:34] -rw------- 1 boinc boinc   1350784 Oct 14 12:53 log.46676269._086985.job.log.1
[2025-10-14 13:11:34] -rw------- 1 boinc boinc       357 Oct 14 12:53 output.list
[2025-10-14 13:11:34] -rw-r--r-- 1 boinc boinc       620 Oct 14 12:53 runtime_log
[2025-10-14 13:11:34] -rw------- 1 boinc boinc   1699840 Oct 14 12:53 result.tar.gz
[2025-10-14 13:11:34] -rw------- 1 boinc boinc       663 Oct 14 12:53 FeQODmSXGS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmOkUMDmfCCvTo.diag
[2025-10-14 13:11:34] -rw-r--r-- 1 boinc boinc      9084 Oct 14 12:53 runtime_log.err
[2025-10-14 13:11:34] -rw-r--r-- 1 boinc boinc        26 Oct 14 13:11 wrapper_checkpoint.txt
[2025-10-14 13:11:34] -rw-r--r-- 1 boinc boinc      8192 Oct 14 13:11 boinc_mmap_file
[2025-10-14 13:11:34] -rw-r--r-- 1 boinc boinc     20646 Oct 14 13:11 stderr.txt
[2025-10-14 13:11:34] HITS file was successfully produced:
[2025-10-14 13:11:34] -rw------- 1 boinc boinc 197483940 Oct 14 12:52 shared/HITS.pool.root.1
[2025-10-14 13:11:34]  *** Contents of shared directory: ***
[2025-10-14 13:11:34] total 411348
[2025-10-14 13:11:34] -rw-r--r-- 2 boinc boinc 221435060 Oct 14 10:13 ATLAS.root_0
[2025-10-14 13:11:34] -rw-r--r-- 2 boinc boinc     15120 Oct 14 10:13 start_atlas.sh
[2025-10-14 13:11:34] -rw-r--r-- 2 boinc boinc    569682 Oct 14 10:13 input.tar.gz
[2025-10-14 13:11:34] -rw------- 1 boinc boinc 197483940 Oct 14 12:52 HITS.pool.root.1
[2025-10-14 13:11:34] -rw------- 1 boinc boinc   1699840 Oct 14 12:53 result.tar.gz
13:11:35 (3410616): run_atlas exited; CPU time 37256.343644
13:11:35 (3410616): called boinc_finish(0)

</stderr_txt>
]]>

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