Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:13:40 (3742829): wrapper (7.7.26015): starting
14:13:40 (3742829): wrapper: running run_atlas (--nthreads 2)
[2025-10-13 14:13:40] Arguments: --nthreads 2
[2025-10-13 14:13:40] Threads: 2
[2025-10-13 14:13:40] Checking for CVMFS
[2025-10-13 14:13:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 14:13:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 14:13:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 14:13:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 14:13:40] 2.9.2.0 2081766 7269 60216 151660 3 57 6329112 36864001 0 130560 0 4375600 99.988 248919 873 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 14:13:40] CVMFS is ok
[2025-10-13 14:13:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 14:13:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 14:13:40] Further information can be found at the LHC@home message board.
[2025-10-13 14:13:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 14:13:40] Checking for apptainer binary...
[2025-10-13 14:13:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 14:13:40] Running /usr/bin/apptainer --version
[2025-10-13 14:13:40] apptainer version 1.4.1-1.1
[2025-10-13 14:13:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 14:13:40] atlasA221
[2025-10-13 14:13:40] apptainer works
[2025-10-13 14:13:40] Set ATHENA_PROC_NUMBER=2
[2025-10-13 14:13:40] Set ATHENA_CORE_NUMBER=2
[2025-10-13 14:13:40] Starting ATLAS job with PandaID=6840538099
[2025-10-13 14:13:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 16:16:14]  *** The last 200 lines of the pilot log: ***
[2025-10-13 16:16:14] 2025-10-13 14:16:00,247 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 16:16:14] 2025-10-13 14:16:00,247 | INFO     | job 6840538099 has completed (purged errors)
[2025-10-13 16:16:14] 2025-10-13 14:16:00,247 | INFO     | overall cleanup function is called
[2025-10-13 16:16:14] 2025-10-13 14:16:01,253 | INFO     | --- collectZombieJob: --- 10, [3752942]
[2025-10-13 16:16:14] 2025-10-13 14:16:01,254 | INFO     | zombie collector waiting for pid 3752942
[2025-10-13 16:16:14] 2025-10-13 14:16:01,254 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 16:16:14] 2025-10-13 14:16:01,254 | INFO     | collected zombie processes
[2025-10-13 16:16:14] 2025-10-13 14:16:01,254 | INFO     | will attempt to kill all subprocesses of pid=3752942
[2025-10-13 16:16:14] 2025-10-13 14:16:01,287 | INFO     | process IDs to be killed: [3752942] (in reverse order)
[2025-10-13 16:16:14] 2025-10-13 14:16:01,308 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 16:16:14] 2025-10-13 14:16:01,308 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 16:16:14] 2025-10-13 14:16:01,309 | INFO     | did not find any defunct processes belonging to 3752942
[2025-10-13 16:16:14] 2025-10-13 14:16:01,310 | INFO     | did not find any defunct processes belonging to 3752942
[2025-10-13 16:16:14] 2025-10-13 14:16:01,310 | INFO     | ready for new job
[2025-10-13 16:16:14] 2025-10-13 14:16:01,310 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 16:16:14] 2025-10-13 14:16:01,310 | INFO     | ***************************************
[2025-10-13 16:16:14] 2025-10-13 14:16:01,310 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 16:16:14] 2025-10-13 14:16:01,310 | INFO     | ***************************************
[2025-10-13 16:16:14] 2025-10-13 14:16:01,310 | INFO     | 
[2025-10-13 16:16:14] 2025-10-13 14:16:01,310 | INFO     | architecture information:
[2025-10-13 16:16:14] 2025-10-13 14:16:01,311 | INFO     | executing command: cat /etc/os-release
[2025-10-13 16:16:14] 2025-10-13 14:16:01,319 | INFO     | cat /etc/os-release:
[2025-10-13 16:16:14] NAME="CentOS Linux"
[2025-10-13 16:16:14] VERSION="7 (Core)"
[2025-10-13 16:16:14] ID="centos"
[2025-10-13 16:16:14] ID_LIKE="rhel fedora"
[2025-10-13 16:16:14] VERSION_ID="7"
[2025-10-13 16:16:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 16:16:14] ANSI_COLOR="0;31"
[2025-10-13 16:16:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 16:16:14] HOME_URL="https://www.centos.org/"
[2025-10-13 16:16:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 16:16:14] 
[2025-10-13 16:16:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 16:16:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 16:16:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 16:16:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 16:16:14] 
[2025-10-13 16:16:14] 2025-10-13 14:16:01,319 | INFO     | ***************************************
[2025-10-13 16:16:14] 2025-10-13 14:16:01,823 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 16:16:14] 2025-10-13 14:16:01,835 | INFO     | sufficient remaining disk space (204260507648 B)
[2025-10-13 16:16:14] 2025-10-13 14:16:01,835 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 16:16:14] 2025-10-13 14:16:01,835 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 16:16:14] 2025-10-13 14:16:01,835 | INFO     | update_server=False
[2025-10-13 16:16:14] 2025-10-13 14:16:01,835 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 16:16:14] 2025-10-13 14:16:01,835 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 16:16:14] 2025-10-13 14:16:01,836 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 16:16:14] 2025-10-13 14:16:01,836 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 16:16:14] 2025-10-13 14:16:01,836 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 16:16:14] 2025-10-13 14:16:01,836 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:16:14] 2025-10-13 14:16:01,901 | INFO     | all payload control threads have been joined
[2025-10-13 16:16:14] 2025-10-13 14:16:02,165 | INFO     | all job control threads have been joined
[2025-10-13 16:16:14] 2025-10-13 14:16:02,364 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:16:14] 2025-10-13 14:16:02,364 | INFO     | aborting loop
[2025-10-13 16:16:14] 2025-10-13 14:16:02,471 | INFO     | all data control threads have been joined
[2025-10-13 16:16:14] 2025-10-13 14:16:02,841 | INFO     | [job] retrieve thread has finished
[2025-10-13 16:16:14] 2025-10-13 14:16:02,842 | INFO     | [job] queue monitor thread has finished
[2025-10-13 16:16:14] 2025-10-13 14:16:02,907 | INFO     | [payload] control thread has finished
[2025-10-13 16:16:14] 2025-10-13 14:16:02,941 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 16:16:14] 2025-10-13 14:16:03,041 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 16:16:14] 2025-10-13 14:16:03,042 | INFO     | [job] validate thread has finished
[2025-10-13 16:16:14] 2025-10-13 14:16:03,126 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 16:16:14] 2025-10-13 14:16:03,135 | INFO     | [payload] validate_post thread has finished
[2025-10-13 16:16:14] 2025-10-13 14:16:03,171 | INFO     | [job] control thread has finished
[2025-10-13 16:16:14] 2025-10-13 14:16:03,370 | INFO     | [job] job monitor thread has finished
[2025-10-13 16:16:14] 2025-10-13 14:16:03,477 | INFO     | [data] control thread has finished
[2025-10-13 16:16:14] 2025-10-13 14:16:03,578 | INFO     | [data] copytool_in thread has finished
[2025-10-13 16:16:14] 2025-10-13 14:16:03,631 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 16:16:14] 2025-10-13 14:16:03,696 | INFO     | [monitor] cgroup control has ended
[2025-10-13 16:16:14] 2025-10-13 14:16:03,752 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 16:16:14] 2025-10-13 14:16:04,185 | INFO     | [payload] failed_post thread has finished
[2025-10-13 16:16:14] 2025-10-13 14:16:04,312 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 16:16:14] 2025-10-13 14:16:04,944 | INFO     | [data] copytool_out thread has finished
[2025-10-13 16:16:14] 2025-10-13 14:16:07,759 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 16:16:14] 2025-10-13 14:16:09,019 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139742580492096)>', '<ExcThread(monitor, started 139741727028992)>']
[2025-10-13 16:16:14] 2025-10-13 14:16:09,880 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 16:16:14] 2025-10-13 14:16:09,880 | INFO     | [monitor] control thread has ended
[2025-10-13 16:16:14] 2025-10-13 14:16:14,045 | INFO     | all workflow threads have been joined
[2025-10-13 16:16:14] 2025-10-13 14:16:14,045 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 16:16:14] 2025-10-13 14:16:14,046 | INFO     | traces error code: 0
[2025-10-13 16:16:14] 2025-10-13 14:16:14,046 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 16:16:14] 2025-10-13 14:16:14,088 [wrapper] ==== pilot stdout END ====
[2025-10-13 16:16:14] 2025-10-13 14:16:14,090 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 16:16:14] 2025-10-13 14:16:14,093 [wrapper] pilotpid: 3746532
[2025-10-13 16:16:14] 2025-10-13 14:16:14,095 [wrapper] Pilot exit status: 0
[2025-10-13 16:16:14] 2025-10-13 14:16:14,101 [wrapper] pandaids: 6840538099
[2025-10-13 16:16:14] 2025-10-13 14:16:14,114 [wrapper] cleanup supervisor_pilot 3767674 3746533
[2025-10-13 16:16:14] 2025-10-13 14:16:14,116 [wrapper] Test setup, not cleaning
[2025-10-13 16:16:14] 2025-10-13 14:16:14,118 [wrapper] apfmon messages muted
[2025-10-13 16:16:14] 2025-10-13 14:16:14,120 [wrapper] ==== wrapper stdout END ====
[2025-10-13 16:16:14] 2025-10-13 14:16:14,123 [wrapper] ==== wrapper stderr END ====
[2025-10-13 16:16:14]  *** Error codes and diagnostics ***
[2025-10-13 16:16:14]     "exeErrorCode": 0,
[2025-10-13 16:16:14]     "exeErrorDiag": "",
[2025-10-13 16:16:14]     "pilotErrorCode": 0,
[2025-10-13 16:16:14]     "pilotErrorDiag": "",
[2025-10-13 16:16:14]  *** Listing of results directory ***
[2025-10-13 16:16:14] total 410140
[2025-10-13 16:16:14] -rw-r--r-- 1 boinc boinc    557409 Oct 12 20:53 pilot3.tar.gz
[2025-10-13 16:16:14] -rw-r--r-- 1 boinc boinc      5112 Oct 12 21:03 queuedata.json
[2025-10-13 16:16:14] -rwx------ 1 boinc boinc     36292 Oct 12 21:03 runpilot2-wrapper.sh
[2025-10-13 16:16:14] -rw-r--r-- 1 boinc boinc       100 Oct 13 14:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 16:16:14] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 14:13 run_atlas
[2025-10-13 16:16:14] -rw-r--r-- 1 boinc boinc       105 Oct 13 14:13 job.xml
[2025-10-13 16:16:14] -rw-r--r-- 2 boinc boinc 219893564 Oct 13 14:13 EVNT.46676267._004438.pool.root.1
[2025-10-13 16:16:14] -rw-r--r-- 2 boinc boinc    569682 Oct 13 14:13 input.tar.gz
[2025-10-13 16:16:14] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:13 start_atlas.sh
[2025-10-13 16:16:14] drwxrwx--x 2 boinc boinc      4096 Oct 13 14:13 shared
[2025-10-13 16:16:14] -rw-r--r-- 1 boinc boinc         0 Oct 13 14:13 boinc_setup_complete
[2025-10-13 16:16:14] -rw-r--r-- 1 boinc boinc      6285 Oct 13 14:13 init_data.xml
[2025-10-13 16:16:14] -rw-r--r-- 1 boinc boinc         0 Oct 13 14:13 boinc_lockfile
[2025-10-13 16:16:14] -rw-r--r-- 1 boinc boinc      2550 Oct 13 14:13 pandaJob.out
[2025-10-13 16:16:14] -rw------- 1 boinc boinc    972497 Oct 13 14:13 agis_schedconf.cvmfs.json
[2025-10-13 16:16:14] -rw------- 1 boinc boinc   1560580 Oct 13 14:13 agis_ddmendpoints.agis.ALL.json
[2025-10-13 16:16:14] drwx------ 5 boinc boinc      4096 Oct 13 14:13 pilot3
[2025-10-13 16:16:14] -rw------- 1 boinc boinc        95 Oct 13 16:15 pilot_heartbeat.json
[2025-10-13 16:16:14] -rw------- 1 boinc boinc 193535265 Oct 13 16:15 HITS.46676269._086971.pool.root.1
[2025-10-13 16:16:14] -rw-r--r-- 1 boinc boinc       529 Oct 13 16:15 boinc_task_state.xml
[2025-10-13 16:16:14] -rw------- 1 boinc boinc      1015 Oct 13 16:15 memory_monitor_summary.json
[2025-10-13 16:16:14] -rw------- 1 boinc boinc    280845 Oct 13 16:15 log.46676269._086971.job.log.tgz.1
[2025-10-13 16:16:14] -rw------- 1 boinc boinc      7760 Oct 13 16:16 heartbeat.json
[2025-10-13 16:16:14] -rw-r--r-- 1 boinc boinc      8192 Oct 13 16:16 boinc_mmap_file
[2025-10-13 16:16:14] -rw------- 1 boinc boinc      4556 Oct 13 16:16 pilotlog.txt
[2025-10-13 16:16:14] -rw------- 1 boinc boinc   1056404 Oct 13 16:16 log.46676269._086971.job.log.1
[2025-10-13 16:16:14] -rw------- 1 boinc boinc       357 Oct 13 16:16 output.list
[2025-10-13 16:16:14] -rw-r--r-- 1 boinc boinc       620 Oct 13 16:16 runtime_log
[2025-10-13 16:16:14] -rw------- 1 boinc boinc   1351680 Oct 13 16:16 result.tar.gz
[2025-10-13 16:16:14] -rw------- 1 boinc boinc       662 Oct 13 16:16 wm0NDmSXGS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmAkUMDmbvlScm.diag
[2025-10-13 16:16:14] -rw-r--r-- 1 boinc boinc      8792 Oct 13 16:16 runtime_log.err
[2025-10-13 16:16:14] -rw-r--r-- 1 boinc boinc        27 Oct 13 16:16 wrapper_checkpoint.txt
[2025-10-13 16:16:14] -rw-r--r-- 1 boinc boinc     10831 Oct 13 16:16 stderr.txt
[2025-10-13 16:16:14] HITS file was successfully produced:
[2025-10-13 16:16:14] -rw------- 1 boinc boinc 193535265 Oct 13 16:15 shared/HITS.pool.root.1
[2025-10-13 16:16:14]  *** Contents of shared directory: ***
[2025-10-13 16:16:14] total 405644
[2025-10-13 16:16:14] -rw-r--r-- 2 boinc boinc 219893564 Oct 13 14:13 ATLAS.root_0
[2025-10-13 16:16:14] -rw-r--r-- 2 boinc boinc    569682 Oct 13 14:13 input.tar.gz
[2025-10-13 16:16:14] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:13 start_atlas.sh
[2025-10-13 16:16:14] -rw------- 1 boinc boinc 193535265 Oct 13 16:15 HITS.pool.root.1
[2025-10-13 16:16:14] -rw------- 1 boinc boinc   1351680 Oct 13 16:16 result.tar.gz
16:16:16 (3742829): run_atlas exited; CPU time 14218.233938
16:16:16 (3742829): called boinc_finish(0)

</stderr_txt>
]]>

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