Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:52:14 (2681379): wrapper (7.7.26015): starting
14:52:14 (2681379): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 14:52:14] Arguments: --nthreads 6
[2025-10-13 14:52:14] Threads: 6
[2025-10-13 14:52:14] Checking for CVMFS
[2025-10-13 14:52:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 14:52:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 14:52:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 14:52:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 14:52:15] 2.11.5.0 3385007 5453 100124 151650 2 57 13640031 20971520 929 130560 0 10821097 99.996 185604 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 14:52:15] CVMFS is ok
[2025-10-13 14:52:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 14:52:15] Checking for apptainer binary...
[2025-10-13 14:52:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 14:52:15] Running /usr/bin/apptainer --version
[2025-10-13 14:52:15] apptainer version 1.3.6-1.el9
[2025-10-13 14:52:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 14:52:15] testio006
[2025-10-13 14:52:15] apptainer works
[2025-10-13 14:52:15] Set ATHENA_PROC_NUMBER=6
[2025-10-13 14:52:15] Set ATHENA_CORE_NUMBER=6
[2025-10-13 14:52:15] Starting ATLAS job with PandaID=6840749929
[2025-10-13 14:52:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 16:09:53]  *** The last 200 lines of the pilot log: ***
[2025-10-13 16:09:53] 2025-10-13 07:08:30,519 | INFO     | time since job start (4549s) is within the limit (172800.0s)
[2025-10-13 16:09:53] 2025-10-13 07:08:32,525 | INFO     | time since job start (4551s) is within the limit (172800.0s)
[2025-10-13 16:09:53] 2025-10-13 07:08:32,894 | INFO     | monitor loop #353: job 0:6840749929 is in state 'finished'
[2025-10-13 16:09:53] 2025-10-13 07:08:32,894 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:09:53] 2025-10-13 07:08:34,530 | INFO     | time since job start (4553s) is within the limit (172800.0s)
[2025-10-13 16:09:53] 2025-10-13 07:08:35,395 | INFO     | monitor loop #354: job 0:6840749929 is in state 'finished'
[2025-10-13 16:09:53] 2025-10-13 07:08:35,395 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:09:53] 2025-10-13 07:08:36,536 | INFO     | time since job start (4555s) is within the limit (172800.0s)
[2025-10-13 16:09:53] 2025-10-13 07:08:37,897 | INFO     | monitor loop #355: job 0:6840749929 is in state 'finished'
[2025-10-13 16:09:53] 2025-10-13 07:08:37,897 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:09:53] 2025-10-13 07:08:38,541 | INFO     | time since job start (4557s) is within the limit (172800.0s)
[2025-10-13 16:09:53] 2025-10-13 07:08:40,400 | INFO     | monitor loop #356: job 0:6840749929 is in state 'finished'
[2025-10-13 16:09:53] 2025-10-13 07:08:40,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:09:53] 2025-10-13 07:08:40,547 | INFO     | time since job start (4559s) is within the limit (172800.0s)
[2025-10-13 16:09:53] 2025-10-13 07:08:42,550 | INFO     | time since job start (4561s) is within the limit (172800.0s)
[2025-10-13 16:09:53] 2025-10-13 07:08:42,903 | INFO     | monitor loop #357: job 0:6840749929 is in state 'finished'
[2025-10-13 16:09:53] 2025-10-13 07:08:42,903 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:09:53] 2025-10-13 07:08:44,556 | INFO     | time since job start (4563s) is within the limit (172800.0s)
[2025-10-13 16:09:53] 2025-10-13 07:08:45,406 | INFO     | monitor loop #358: job 0:6840749929 is in state 'finished'
[2025-10-13 16:09:53] 2025-10-13 07:08:45,406 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:09:53] 2025-10-13 07:08:46,561 | INFO     | time since job start (4565s) is within the limit (172800.0s)
[2025-10-13 16:09:53] 2025-10-13 07:08:47,646 | INFO     | PID=2685160 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 16:09:53] 2025-10-13 07:08:47,646 | INFO     | .. there are 2 such processes running
[2025-10-13 16:09:53] 2025-10-13 07:08:47,909 | INFO     | monitor loop #359: job 0:6840749929 is in state 'finished'
[2025-10-13 16:09:53] 2025-10-13 07:08:47,909 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:09:53] 2025-10-13 07:08:48,646 | INFO     | time since job start (4567s) is within the limit (172800.0s)
[2025-10-13 16:09:53] 2025-10-13 07:08:50,412 | INFO     | monitor loop #360: job 0:6840749929 is in state 'finished'
[2025-10-13 16:09:53] 2025-10-13 07:08:50,412 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:09:53] 2025-10-13 07:08:50,652 | INFO     | time since job start (4569s) is within the limit (172800.0s)
[2025-10-13 16:09:53] 2025-10-13 07:08:52,657 | INFO     | time since job start (4571s) is within the limit (172800.0s)
[2025-10-13 16:09:53] 2025-10-13 07:08:52,915 | INFO     | monitor loop #361: job 0:6840749929 is in state 'finished'
[2025-10-13 16:09:53] 2025-10-13 07:08:52,915 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:09:53] 2025-10-13 07:08:54,663 | INFO     | time since job start (4573s) is within the limit (172800.0s)
[2025-10-13 16:09:53] 2025-10-13 07:08:55,417 | INFO     | monitor loop #362: job 0:6840749929 is in state 'finished'
[2025-10-13 16:09:53] 2025-10-13 07:08:55,418 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:09:53] 2025-10-13 07:08:56,669 | INFO     | time since job start (4575s) is within the limit (172800.0s)
[2025-10-13 16:09:53] 2025-10-13 07:08:57,330 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 16:09:53] 2025-10-13 07:08:57,332 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4031.2020625
[2025-10-13 16:09:53] 2025-10-13 07:08:57,335 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6840749929/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 16:09:53] 2025-10-13 07:08:57,336 | INFO     | extracted standard info from prmon json
[2025-10-13 16:09:53] 2025-10-13 07:08:57,336 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 16:09:53] 2025-10-13 07:08:57,336 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 16:09:53] 2025-10-13 07:08:57,336 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 16:09:53] 2025-10-13 07:08:57,336 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 16:09:53] 2025-10-13 07:08:57,337 | INFO     | fitting pss+swap vs Time
[2025-10-13 16:09:53] 2025-10-13 07:08:57,338 | INFO     | sum of square deviations: 93240818.0
[2025-10-13 16:09:53] 2025-10-13 07:08:57,338 | INFO     | sum of deviations: -5604801024.0
[2025-10-13 16:09:53] 2025-10-13 07:08:57,338 | INFO     | mean x: 1760337101.0
[2025-10-13 16:09:53] 2025-10-13 07:08:57,338 | INFO     | mean y: 2556743.074626866
[2025-10-13 16:09:53] 2025-10-13 07:08:57,338 | INFO     | -- intersect: 105818222005.36343
[2025-10-13 16:09:53] 2025-10-13 07:08:57,338 | INFO     | intersect: 105818222005.36343
[2025-10-13 16:09:53] 2025-10-13 07:08:57,338 | INFO     | chi2: 0.047472281059748045
[2025-10-13 16:09:53] 2025-10-13 07:08:57,338 | INFO     | -- intersect: 105818222005.36343
[2025-10-13 16:09:53] 2025-10-13 07:08:57,339 | INFO     | current memory leak: -60.11 B/s (using 67 data points, chi2=0.05)
[2025-10-13 16:09:53] 2025-10-13 07:08:57,339 | INFO     | could have reported an average CPU frequency of 3992 MHz (6 samples)
[2025-10-13 16:09:53] 2025-10-13 07:08:57,339 | INFO     | ..............................
[2025-10-13 16:09:53] 2025-10-13 07:08:57,339 | INFO     | . Timing measurements:
[2025-10-13 16:09:53] 2025-10-13 07:08:57,339 | INFO     | . get job = 0 s
[2025-10-13 16:09:53] 2025-10-13 07:08:57,339 | INFO     | . initial setup = 21 s
[2025-10-13 16:09:53] 2025-10-13 07:08:57,339 | INFO     | . payload setup = 3 s
[2025-10-13 16:09:53] 2025-10-13 07:08:57,339 | INFO     | . stage-in = 0 s
[2025-10-13 16:09:53] 2025-10-13 07:08:57,339 | INFO     | . payload execution = 4477 s
[2025-10-13 16:09:53] 2025-10-13 07:08:57,339 | INFO     | . stage-out = 0 s
[2025-10-13 16:09:53] 2025-10-13 07:08:57,339 | INFO     | . log creation = 0 s
[2025-10-13 16:09:53] 2025-10-13 07:08:57,340 | INFO     | ..............................
[2025-10-13 16:09:53] 2025-10-13 07:08:57,413 | INFO     | 
[2025-10-13 16:09:53] 2025-10-13 07:08:57,413 | INFO     | job summary report
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | --------------------------------------------------
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | PanDA job id: 6840749929
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | task id: 46676269
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | errors: (none)
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | pilot state: finished 
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | transexitcode: 0
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | exeerrorcode: 0
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | exeerrordiag: 
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | exitcode: 0
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | exitmsg: OK
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | cpuconsumptiontime: 24777 s
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | nevents: 400
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | neventsw: 0
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | pid: 2691904
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | pgrp: 2691904
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | corecount: 6
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | event service: False
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | sizes: {0: 2348029, 1: 2348885, 4: 2349147, 11: 2349175, 4485: 2375344, 4486: 2384342, 4487: 2384526, 4562: 2384720}
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | --------------------------------------------------
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | 
[2025-10-13 16:09:53] 2025-10-13 07:08:57,414 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-13 16:09:53] 2025-10-13 07:08:57,428 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,428 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,428 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,428 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,428 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,428 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,428 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,428 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,428 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,428 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,428 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,428 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,428 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,428 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,428 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,428 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,428 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,429 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 16:09:53] 2025-10-13 07:08:57,429 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,429 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 16:09:53] 2025-10-13 07:08:57,429 | INFO     | job 6840749929 has completed (purged errors)
[2025-10-13 16:09:53] 2025-10-13 07:08:57,429 | INFO     | overall cleanup function is called
[2025-10-13 16:09:53] 2025-10-13 07:08:58,435 | INFO     | --- collectZombieJob: --- 10, [2691904]
[2025-10-13 16:09:53] 2025-10-13 07:08:58,435 | INFO     | zombie collector waiting for pid 2691904
[2025-10-13 16:09:53] 2025-10-13 07:08:58,435 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 16:09:53] 2025-10-13 07:08:58,435 | INFO     | collected zombie processes
[2025-10-13 16:09:53] 2025-10-13 07:08:58,436 | INFO     | will attempt to kill all subprocesses of pid=2691904
[2025-10-13 16:09:53] 2025-10-13 07:08:58,501 | INFO     | process IDs to be killed: [2691904] (in reverse order)
[2025-10-13 16:09:53] 2025-10-13 07:08:58,531 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 16:09:53] 2025-10-13 07:08:58,531 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 16:09:53] 2025-10-13 07:08:58,534 | INFO     | did not find any defunct processes belonging to 2691904
[2025-10-13 16:09:53] 2025-10-13 07:08:58,536 | INFO     | did not find any defunct processes belonging to 2691904
[2025-10-13 16:09:53] 2025-10-13 07:08:58,536 | INFO     | ready for new job
[2025-10-13 16:09:53] 2025-10-13 07:08:58,536 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 16:09:53] 2025-10-13 07:08:58,537 | INFO     | ***************************************
[2025-10-13 16:09:53] 2025-10-13 07:08:58,537 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 16:09:53] 2025-10-13 07:08:58,537 | INFO     | ***************************************
[2025-10-13 16:09:53] 2025-10-13 07:08:58,537 | INFO     | 
[2025-10-13 16:09:53] 2025-10-13 07:08:58,538 | INFO     | architecture information:
[2025-10-13 16:09:53] 2025-10-13 07:08:58,538 | INFO     | executing command: cat /etc/os-release
[2025-10-13 16:09:53] 2025-10-13 07:08:58,549 | INFO     | cat /etc/os-release:
[2025-10-13 16:09:53] NAME="CentOS Linux"
[2025-10-13 16:09:53] VERSION="7 (Core)"
[2025-10-13 16:09:53] ID="centos"
[2025-10-13 16:09:53] ID_LIKE="rhel fedora"
[2025-10-13 16:09:53] VERSION_ID="7"
[2025-10-13 16:09:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 16:09:53] ANSI_COLOR="0;31"
[2025-10-13 16:09:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 16:09:53] HOME_URL="https://www.centos.org/"
[2025-10-13 16:09:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 16:09:53] 
[2025-10-13 16:09:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 16:09:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 16:09:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 16:09:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 16:09:53] 
[2025-10-13 16:09:53] 2025-10-13 07:08:58,549 | INFO     | ***************************************
[2025-10-13 16:09:53] 2025-10-13 07:08:59,052 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-13 16:09:53] 2025-10-13 07:08:59,062 | INFO     | sufficient remaining disk space (83199262720 B)
[2025-10-13 16:09:53] 2025-10-13 07:08:59,062 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 16:09:53] 2025-10-13 07:08:59,062 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 16:09:53] 2025-10-13 07:08:59,062 | INFO     | update_server=False
[2025-10-13 16:09:53] 2025-10-13 07:08:59,062 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 16:09:53] 2025-10-13 07:08:59,062 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:09:53] 2025-10-13 07:08:59,062 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:09:53] 2025-10-13 07:08:59,062 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 16:09:53] 2025-10-13 07:08:59,063 | INFO     | aborting loop
[2025-10-13 16:09:53] 2025-10-13 07:08:59,154 | INFO     | all payload control threads have been joined
[2025-10-13 16:09:53] 2025-10-13 07:08:59,164 | INFO     | all data control threads have been joined
[2025-10-13 16:09:53] 2025-10-13 07:08:59,867 | INFO     | all job control threads have been joined
[2025-10-13 16:09:53] 2025-10-13 07:09:00,028 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 16:09:53] 2025-10-13 07:09:00,063 | INFO     | [job] retrieve thread has finished
[2025-10-13 16:09:53] 2025-10-13 07:09:00,068 | INFO     | [job] queue monitor thread has finished
[2025-10-13 16:09:53] 2025-10-13 07:09:00,068 | INFO     | [job] job monitor thread has finished
[2025-10-13 16:09:53] 2025-10-13 07:09:00,142 | INFO     | [payload] failed_post thread has finished
[2025-10-13 16:09:53] 2025-10-13 07:09:00,160 | INFO     | [payload] control thread has finished
[2025-10-13 16:09:53] 2025-10-13 07:09:00,170 | INFO     | [data] control thread has finished
[2025-10-13 16:09:53] 2025-10-13 07:09:00,532 | INFO     | [job] validate thread has finished
[2025-10-13 16:09:53] 2025-10-13 07:09:00,757 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 16:09:53] 2025-10-13 07:09:00,830 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 16:09:53] 2025-10-13 07:09:00,866 | INFO     | [data] copytool_in thread has finished
[2025-10-13 16:09:53] 2025-10-13 07:09:00,873 | INFO     | [job] control thread has finished
[2025-10-13 16:09:53] 2025-10-13 07:09:01,013 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 16:09:53] 2025-10-13 07:09:01,060 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 16:09:53] 2025-10-13 07:09:01,068 | INFO     | [data] copytool_out thread has finished
[2025-10-13 16:09:53] 2025-10-13 07:09:01,581 | INFO     | [payload] validate_post thread has finished
[2025-10-13 16:09:53] 2025-10-13 07:09:04,034 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 16:09:53] 2025-10-13 07:09:29,827 | INFO     | PID=2685160 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 16:09:53] 2025-10-13 07:09:29,827 | INFO     | .. there are 2 such processes running
[2025-10-13 16:09:53] 2025-10-13 07:09:29,827 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 16:09:53] 2025-10-13 07:09:29,827 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 16:09:53] 2025-10-13 07:09:29,827 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 16:09:53] 2025-10-13 07:09:47,538 | INFO     | [monitor] cgroup control has ended
[2025-10-13 16:09:53] 2025-10-13 07:09:48,477 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140195531605824)>', '<ExcThread(monitor, started 140194753791744)>']
[2025-10-13 16:09:53] 2025-10-13 07:09:48,917 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 16:09:53] 2025-10-13 07:09:48,917 | INFO     | [monitor] control thread has ended
[2025-10-13 16:09:53] 2025-10-13 07:09:53,503 | INFO     | all workflow threads have been joined
[2025-10-13 16:09:53] 2025-10-13 07:09:53,503 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 16:09:53] 2025-10-13 07:09:53,503 | INFO     | traces error code: 0
[2025-10-13 16:09:53] 2025-10-13 07:09:53,503 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 16:09:53] 2025-10-13 07:09:53,579 [wrapper] ==== pilot stdout END ====
[2025-10-13 16:09:53] 2025-10-13 07:09:53,581 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 16:09:53] 2025-10-13 07:09:53,582 [wrapper] pilotpid: 2685160
[2025-10-13 16:09:53] 2025-10-13 07:09:53,584 [wrapper] Pilot exit status: 0
[2025-10-13 16:09:53] 2025-10-13 07:09:53,591 [wrapper] pandaids: 6840749929
[2025-10-13 16:09:53] 2025-10-13 07:09:53,610 [wrapper] cleanup supervisor_pilot 2727732 2685161
[2025-10-13 16:09:53] 2025-10-13 07:09:53,612 [wrapper] Test setup, not cleaning
[2025-10-13 16:09:53] 2025-10-13 07:09:53,614 [wrapper] apfmon messages muted
[2025-10-13 16:09:53] 2025-10-13 07:09:53,616 [wrapper] ==== wrapper stdout END ====
[2025-10-13 16:09:53] 2025-10-13 07:09:53,617 [wrapper] ==== wrapper stderr END ====
[2025-10-13 16:09:53]  *** Error codes and diagnostics ***
[2025-10-13 16:09:53]     "exeErrorCode": 0,
[2025-10-13 16:09:53]     "exeErrorDiag": "",
[2025-10-13 16:09:53]     "pilotErrorCode": 0,
[2025-10-13 16:09:53]     "pilotErrorDiag": "",
[2025-10-13 16:09:53]  *** Listing of results directory ***
[2025-10-13 16:09:53] total 408544
[2025-10-13 16:09:53] -rw-r--r--. 1 boinc boinc    557409 Oct 13 05:55 pilot3.tar.gz
[2025-10-13 16:09:53] -rwx------. 1 boinc boinc     36292 Oct 13 06:03 runpilot2-wrapper.sh
[2025-10-13 16:09:53] -rw-r--r--. 1 boinc boinc      5112 Oct 13 06:03 queuedata.json
[2025-10-13 16:09:53] -rw-r--r--. 1 boinc boinc       100 Oct 13 14:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 16:09:53] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 14:52 run_atlas
[2025-10-13 16:09:53] -rw-r--r--. 1 boinc boinc       105 Oct 13 14:52 job.xml
[2025-10-13 16:09:53] -rw-r--r--. 1 boinc boinc      9465 Oct 13 14:52 init_data.xml
[2025-10-13 16:09:53] -rw-r--r--. 2 boinc boinc 219749034 Oct 13 14:52 EVNT.46676267._004764.pool.root.1
[2025-10-13 16:09:53] -rw-r--r--. 2 boinc boinc     15120 Oct 13 14:52 start_atlas.sh
[2025-10-13 16:09:53] drwxrwx--x. 2 boinc boinc        68 Oct 13 14:52 shared
[2025-10-13 16:09:53] -rw-r--r--. 2 boinc boinc    569671 Oct 13 14:52 input.tar.gz
[2025-10-13 16:09:53] -rw-r--r--. 1 boinc boinc         0 Oct 13 14:52 boinc_lockfile
[2025-10-13 16:09:53] -rw-r--r--. 1 boinc boinc      2550 Oct 13 14:52 pandaJob.out
[2025-10-13 16:09:53] -rw-------. 1 boinc boinc    973230 Oct 13 14:52 agis_schedconf.cvmfs.json
[2025-10-13 16:09:53] -rw-------. 1 boinc boinc   1560580 Oct 13 14:52 agis_ddmendpoints.agis.ALL.json
[2025-10-13 16:09:53] drwx------. 5 boinc boinc      4096 Oct 13 14:52 pilot3
[2025-10-13 16:09:53] -rw-------. 1 boinc boinc 192776227 Oct 13 16:07 HITS.46676269._089357.pool.root.1
[2025-10-13 16:09:53] -rw-r--r--. 1 boinc boinc       529 Oct 13 16:07 boinc_task_state.xml
[2025-10-13 16:09:53] -rw-------. 1 boinc boinc      1020 Oct 13 16:07 memory_monitor_summary.json
[2025-10-13 16:09:53] -rw-------. 1 boinc boinc    291300 Oct 13 16:07 log.46676269._089357.job.log.tgz.1
[2025-10-13 16:09:53] -rw-------. 1 boinc boinc        95 Oct 13 16:08 pilot_heartbeat.json
[2025-10-13 16:09:53] -rw-------. 1 boinc boinc      7758 Oct 13 16:08 heartbeat.json
[2025-10-13 16:09:53] -rw-r--r--. 1 boinc boinc      8192 Oct 13 16:09 boinc_mmap_file
[2025-10-13 16:09:53] -rw-r--r--. 1 boinc boinc        27 Oct 13 16:09 wrapper_checkpoint.txt
[2025-10-13 16:09:53] -rw-------. 1 boinc boinc      4823 Oct 13 16:09 pilotlog.txt
[2025-10-13 16:09:53] -rw-------. 1 boinc boinc    676607 Oct 13 16:09 log.46676269._089357.job.log.1
[2025-10-13 16:09:53] -rw-------. 1 boinc boinc       357 Oct 13 16:09 output.list
[2025-10-13 16:09:53] -rw-r--r--. 1 boinc boinc       620 Oct 13 16:09 runtime_log
[2025-10-13 16:09:53] -rw-------. 1 boinc boinc    983040 Oct 13 16:09 result.tar.gz
[2025-10-13 16:09:53] -rw-------. 1 boinc boinc       641 Oct 13 16:09 Xj7LDmwOIS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBYlNDmAY9hVn.diag
[2025-10-13 16:09:53] -rw-r--r--. 1 boinc boinc      8661 Oct 13 16:09 runtime_log.err
[2025-10-13 16:09:53] -rw-r--r--. 1 boinc boinc     21971 Oct 13 16:09 stderr.txt
[2025-10-13 16:09:53] HITS file was successfully produced:
[2025-10-13 16:09:53] -rw-------. 1 boinc boinc 192776227 Oct 13 16:07 shared/HITS.pool.root.1
[2025-10-13 16:09:53]  *** Contents of shared directory: ***
[2025-10-13 16:09:53] total 404396
[2025-10-13 16:09:53] -rw-r--r--. 2 boinc boinc 219749034 Oct 13 14:52 ATLAS.root_0
[2025-10-13 16:09:53] -rw-r--r--. 2 boinc boinc     15120 Oct 13 14:52 start_atlas.sh
[2025-10-13 16:09:53] -rw-r--r--. 2 boinc boinc    569671 Oct 13 14:52 input.tar.gz
[2025-10-13 16:09:53] -rw-------. 1 boinc boinc 192776227 Oct 13 16:07 HITS.pool.root.1
[2025-10-13 16:09:53] -rw-------. 1 boinc boinc    983040 Oct 13 16:09 result.tar.gz
16:09:55 (2681379): run_atlas exited; CPU time 24816.894636
16:09:55 (2681379): called boinc_finish(0)

</stderr_txt>
]]>

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