Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 17:18:23 (9040): vboxwrapper version 26210
2025-10-13 17:18:23 (9040): BOINC client version: 8.0.2
2025-10-13 17:18:24 (9040): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-10-13 17:18:24 (9040): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 17:18:24 (9040): Create VM. (boinc_7f5868a3f39860be, slot#1)
2025-10-13 17:18:25 (9040): Setting Memory Size for VM. (6000MB)
2025-10-13 17:18:25 (9040): Setting CPU Count for VM. (3)
2025-10-13 17:18:25 (9040): Setting Chipset Options for VM.
2025-10-13 17:18:26 (9040): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 17:18:26 (9040): Setting Boot Options for VM.
2025-10-13 17:18:26 (9040): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 17:18:27 (9040): Enabling VM Network Access.
2025-10-13 17:18:27 (9040): Disabling USB Support for VM.
2025-10-13 17:18:27 (9040): Disabling COM Port Support for VM.
2025-10-13 17:18:27 (9040): Disabling LPT Port Support for VM.
2025-10-13 17:18:28 (9040): Disabling Audio Support for VM.
2025-10-13 17:18:28 (9040): Disabling Clipboard Support for VM.
2025-10-13 17:18:28 (9040): Disabling Drag and Drop Support for VM.
2025-10-13 17:18:28 (9040): Adding storage controller(s) to VM.
2025-10-13 17:18:29 (9040): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 17:18:29 (9040): Adding VirtualBox Guest Additions to VM.
2025-10-13 17:18:29 (9040): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 17:18:30 (9040): forwarding host port 64386 to guest port 80
2025-10-13 17:18:30 (9040): Enabling remote desktop for VM.
2025-10-13 17:18:30 (9040): Enabling shared directory for VM.
2025-10-13 17:18:31 (9040): Starting VM using VBoxManage interface. (boinc_7f5868a3f39860be, slot#1)
2025-10-13 17:18:37 (9040): Successfully started VM. (PID = '20820')
2025-10-13 17:18:37 (9040): Reporting VM Process ID to BOINC.
2025-10-13 17:18:37 (9040): Guest Log: BIOS: VirtualBox 7.1.10
2025-10-13 17:18:37 (9040): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 17:18:37 (9040): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 17:18:37 (9040): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 17:18:37 (9040): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 17:18:37 (9040): Detected: Web Application Enabled (http://localhost:64386)
2025-10-13 17:18:37 (9040): Detected: Remote Desktop Enabled (localhost:64387)
2025-10-13 17:18:37 (9040): Preference change detected
2025-10-13 17:18:37 (9040): Setting CPU throttle for VM. (100%)
2025-10-13 17:18:37 (9040): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 17:18:39 (9040): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 17:18:39 (9040): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 17:18:42 (9040): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 17:18:42 (9040): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 17:18:42 (9040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 17:19:22 (9040): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 17:19:22 (9040): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-13 17:19:28 (9040): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 17:19:28 (9040): Guest Log: 00:00:00.000158 main     Log opened 2025-10-13T17:19:27.252120000Z
2025-10-13 17:19:28 (9040): Guest Log: 00:00:00.000295 main     OS Product: Linux
2025-10-13 17:19:28 (9040): Guest Log: 00:00:00.000340 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 17:19:28 (9040): Guest Log: 00:00:00.000377 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 17:19:28 (9040): Guest Log: 00:00:00.000414 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 17:19:28 (9040): Guest Log: 00:00:00.000415 main     Process ID: 1347
2025-10-13 17:19:28 (9040): Guest Log: 00:00:00.000416 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 17:19:28 (9040): Guest Log: 00:00:00.001112 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 17:19:29 (9040): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 17:19:29 (9040): Guest Log: [INFO] Mounting shared directory
2025-10-13 17:19:29 (9040): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 17:19:31 (9040): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 17:19:31 (9040): Guest Log: [INFO] Detected branch: prod
2025-10-13 17:19:31 (9040): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 17:19:31 (9040): Guest Log: Copying input files
2025-10-13 17:19:33 (9040): Guest Log: Copied input files into RunAtlas.
2025-10-13 17:19:33 (9040): Guest Log: Detected user-configured HTTP proxy at http://192.168.0.39:3128 - will set in /etc/cvmfs/default.local
2025-10-13 17:19:38 (9040): Guest Log: 00:00:10.011917 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 227 866 048 000ns (GuestNow=1 760 368 739 388 893 000 ns GuestLast=1 760 375 967 254 941 000 ns fSetTimeLastLoop=true )
2025-10-13 17:20:14 (9040): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 17:20:14 (9040): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 17:20:14 (9040): Guest Log: 2.6.3.0 1621 0 29584 151666 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.39:3128 1
2025-10-13 17:20:15 (9040): Guest Log: copied the webapp to /var/www
2025-10-13 17:20:15 (9040): Guest Log: ATHENA_PROC_NUMBER=3
2025-10-13 17:20:15 (9040): Guest Log: ATHENA_CORE_NUMBER=3
2025-10-13 17:20:15 (9040): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 17:20:15 (9040): Guest Log:  *** Starting ATLAS job. (PandaID=6840537109 taskID=46676269) ***
2025-10-13 18:58:39 (9040): Status Report: Elapsed Time: '6000.000000'
2025-10-13 18:58:39 (9040): Status Report: CPU Time: '16739.421875'
2025-10-13 20:38:42 (9040): Status Report: Elapsed Time: '12000.000000'
2025-10-13 20:38:42 (9040): Status Report: CPU Time: '34641.343750'
2025-10-13 22:18:45 (9040): Status Report: Elapsed Time: '18000.000000'
2025-10-13 22:18:45 (9040): Status Report: CPU Time: '52545.031250'
2025-10-13 22:47:15 (9040): Guest Log:  *** Job finished ***
2025-10-13 22:47:15 (9040): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:19,415 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:19,415 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:30,370 | INFO     | [monitor] cgroup control has ended
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:32,186 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139721144571712)>', '<ExcThread(monitor, started 139720042473216)>']
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:32,552 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:32,553 | INFO     | [monitor] control thread has ended
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:37,191 | INFO     | all workflow threads have been joined
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:37,192 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:37,192 | INFO     | traces error code: 0
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:37,192 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:37,330 [wrapper] ==== pilot stdout END ====
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:37,336 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:37,341 [wrapper] pilotpid: 6013
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:37,346 [wrapper] Pilot exit status: 0
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:37,447 [wrapper] pandaids: 6840537109
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:37,481 [wrapper] cleanup supervisor_pilot 21324 6014
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:37,486 [wrapper] Test setup, not cleaning
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:37,493 [wrapper] apfmon messages muted
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:37,497 [wrapper] ==== wrapper stdout END ====
2025-10-13 22:47:15 (9040): Guest Log: 2025-10-13 20:46:37,502 [wrapper] ==== wrapper stderr END ====
2025-10-13 22:47:15 (9040): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 22:47:15 (9040): Guest Log:     "exeErrorCode": 0,
2025-10-13 22:47:15 (9040): Guest Log:     "exeErrorDiag": "",
2025-10-13 22:47:15 (9040): Guest Log:     "pilotErrorCode": 0,
2025-10-13 22:47:15 (9040): Guest Log:     "pilotErrorDiag": "",
2025-10-13 22:47:15 (9040): Guest Log:  *** Listing of results directory ***
2025-10-13 22:47:15 (9040): Guest Log: total 194364
2025-10-13 22:47:15 (9040): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 18:20 pilot3.tar.gz
2025-10-13 22:47:15 (9040): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 18:43 queuedata.json
2025-10-13 22:47:15 (9040): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 18:44 runpilot2-wrapper.sh
2025-10-13 22:47:15 (9040): Guest Log: -rwxr-xr-x. 1 atlas atlas      9019 Oct 13 15:18 init_data.xml
2025-10-13 22:47:15 (9040): Guest Log: -rwxr-xr-x. 1 atlas atlas    569680 Oct 13 15:18 input.tar.gz
2025-10-13 22:47:15 (9040): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 13 15:18 start_atlas.sh
2025-10-13 22:47:15 (9040): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 13 15:18 EVNT.46676267._004421.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 22:47:15 (9040): Guest Log: -rw-r--r--. 1 atlas atlas      2547 Oct 13 15:19 pandaJob.out
2025-10-13 22:47:15 (9040): Guest Log: -rw-------. 1 atlas atlas    972783 Oct 13 15:20 agis_schedconf.cvmfs.json
2025-10-13 22:47:15 (9040): Guest Log: drwx------. 5 atlas atlas      4096 Oct 13 15:20 pilot3
2025-10-13 22:47:15 (9040): Guest Log: -rw-------. 1 atlas atlas 189024929 Oct 13 20:45 HITS.46676269._086528.pool.root.1
2025-10-13 22:47:15 (9040): Guest Log: -rw-------. 1 atlas atlas        95 Oct 13 20:45 pilot_heartbeat.json
2025-10-13 22:47:15 (9040): Guest Log: -rw-------. 1 atlas atlas      1027 Oct 13 20:45 memory_monitor_summary.json
2025-10-13 22:47:15 (9040): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 20:45 agis_ddmendpoints.agis.ALL.json
2025-10-13 22:47:15 (9040): Guest Log: -rw-------. 1 atlas atlas    438996 Oct 13 20:45 log.46676269._086528.job.log.tgz.1
2025-10-13 22:47:15 (9040): Guest Log: -rw-------. 1 atlas atlas      7783 Oct 13 20:45 heartbeat.json
2025-10-13 22:47:15 (9040): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 13 20:46 pilotlog.txt
2025-10-13 22:47:15 (9040): Guest Log: -rw-------. 1 atlas atlas   2647874 Oct 13 20:46 log.46676269._086528.job.log.1
2025-10-13 22:47:15 (9040): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 20:46 output.list
2025-10-13 22:47:15 (9040): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 20:46 runtime_log
2025-10-13 22:47:15 (9040): Guest Log: -rw-------. 1 atlas atlas   3102720 Oct 13 20:46 result.tar.gz
2025-10-13 22:47:15 (9040): Guest Log: -rw-------. 1 atlas atlas       659 Oct 13 20:46 XOmLDmyEGS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmH8kNDmP1Myhn.diag
2025-10-13 22:47:15 (9040): Guest Log: -rw-r--r--. 1 atlas atlas      8633 Oct 13 20:46 runtime_log.err
2025-10-13 22:47:15 (9040): Guest Log: Looking for outputfile HITS.46676269._086528.pool.root.1
2025-10-13 22:47:15 (9040): Guest Log: HITS file was successfully produced
2025-10-13 22:47:15 (9040): Guest Log: -rw-------. 1 atlas atlas 189024929 Oct 13 20:45 /home/atlas/RunAtlas/HITS.46676269._086528.pool.root.1
2025-10-13 22:47:15 (9040): Guest Log: Successfully finished the ATLAS job!
2025-10-13 22:47:15 (9040): Guest Log: Copying the results back to the shared directory!
2025-10-13 22:47:15 (9040): Guest Log:  *** Contents of shared directory: ***
2025-10-13 22:47:16 (9040): Guest Log: total 404372
2025-10-13 22:47:16 (9040): Guest Log: -rwxrwxrwx. 1 root root 221342236 Oct 13 15:18 ATLAS.root_0
2025-10-13 22:47:16 (9040): Guest Log: -rwxrwxrwx. 1 root root 189024929 Oct 13  2025 HITS.pool.root.1
2025-10-13 22:47:16 (9040): Guest Log: -rwxrwxrwx. 1 root root      9019 Oct 13 15:18 init_data.xml
2025-10-13 22:47:16 (9040): Guest Log: -rwxrwxrwx. 1 root root    569680 Oct 12 22:36 input.tar.gz
2025-10-13 22:47:16 (9040): Guest Log: -rwxrwxrwx. 1 root root   3102720 Oct 13  2025 result.tar.gz
2025-10-13 22:47:16 (9040): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 22:36 start_atlas.sh
2025-10-13 22:47:16 (9040): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 22:47:16 (9040): VM Completion File Detected.
2025-10-13 22:47:16 (9040): Powering off VM.
2025-10-13 22:47:17 (9040): Successfully stopped VM.
2025-10-13 22:47:17 (9040): Deregistering VM. (boinc_7f5868a3f39860be, slot#1)
2025-10-13 22:47:17 (9040): Removing network bandwidth throttle group from VM.
2025-10-13 22:47:17 (9040): Removing VM from VirtualBox.
2025-10-13 22:47:22 (9040): called boinc_finish(0)

</stderr_txt>
]]>

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