Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:48:49 (20080): wrapper (7.7.26015): starting
18:48:49 (20080): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 18:48:49] Arguments: --nthreads 8
[2025-10-12 18:48:49] Threads: 8
[2025-10-12 18:48:49] Checking for CVMFS
[2025-10-12 18:48:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:48:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:48:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:48:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:48:50] 2.11.2.0 25047 53370 115284 151640 2 59 15442706 20275200 917 130560 0 63989227 99.979 2413582 24049 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 18:48:50] CVMFS is ok
[2025-10-12 18:48:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:48:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:48:50] Further information can be found at the LHC@home message board.
[2025-10-12 18:48:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:48:50] Checking for apptainer binary...
[2025-10-12 18:48:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:48:50] Running /usr/bin/apptainer --version
[2025-10-12 18:48:50] apptainer version 1.3.2-1.el7
[2025-10-12 18:48:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:48:50] c-205-37.aglt2.org
[2025-10-12 18:48:50] apptainer works
[2025-10-12 18:48:50] Set ATHENA_PROC_NUMBER=8
[2025-10-12 18:48:50] Set ATHENA_CORE_NUMBER=8
[2025-10-12 18:48:50] Starting ATLAS job with PandaID=6840537558
[2025-10-12 18:48:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:52:23]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:52:23] 2025-10-12 23:51:41,387 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840537558/log.46676269._086705.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._086705.job
[2025-10-12 19:52:23] 2025-10-12 23:51:41,407 | INFO     | adding to output.list: log.46676269._086705.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/82/log.46676269._086705.job.log.tg
[2025-10-12 19:52:23] 2025-10-12 23:51:41,408 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 19:52:23] 2025-10-12 23:51:41,409 | INFO     | summary of transferred files:
[2025-10-12 19:52:23] 2025-10-12 23:51:41,409 | INFO     |  -- lfn=log.46676269._086705.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 19:52:23] 2025-10-12 23:51:41,409 | INFO     | stage-out finished correctly
[2025-10-12 19:52:23] 2025-10-12 23:51:41,848 | INFO     | time since job start (3758s) is within the limit (172800.0s)
[2025-10-12 19:52:23] 2025-10-12 23:51:42,690 | INFO     | monitor loop #282: job 0:6840537558 is in state 'finished'
[2025-10-12 19:52:23] 2025-10-12 23:51:42,690 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:52:23] 2025-10-12 23:51:43,849 | INFO     | time since job start (3760s) is within the limit (172800.0s)
[2025-10-12 19:52:23] 2025-10-12 23:51:44,808 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 19:52:23] 2025-10-12 23:51:45,194 | INFO     | monitor loop #283: job 0:6840537558 is in state 'finished'
[2025-10-12 19:52:23] 2025-10-12 23:51:45,194 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:52:23] 2025-10-12 23:51:45,857 | INFO     | time since job start (3762s) is within the limit (172800.0s)
[2025-10-12 19:52:23] 2025-10-12 23:51:46,458 | INFO     | job 6840537558 has state=finished
[2025-10-12 19:52:23] 2025-10-12 23:51:46,458 | INFO     | preparing for final server update for job 6840537558 in state='finished'
[2025-10-12 19:52:23] 2025-10-12 23:51:46,459 | INFO     | this job has now completed (state=finished)
[2025-10-12 19:52:23] 2025-10-12 23:51:46,459 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 19:52:23] 2025-10-12 23:51:46,459 | INFO     | log transfer has been attempted: DONE
[2025-10-12 19:52:23] 2025-10-12 23:51:46,459 | INFO     | job 6840537558 has finished - writing final server update
[2025-10-12 19:52:23] 2025-10-12 23:51:46,460 | INFO     | total number of processed events: 400 (read)
[2025-10-12 19:52:23] 2025-10-12 23:51:46,461 | INFO     | executing command: lscpu
[2025-10-12 19:52:23] 2025-10-12 23:51:46,493 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 19:52:23] 2025-10-12 23:51:47,695 | INFO     | monitor loop #284: job 0:6840537558 is in state 'finished'
[2025-10-12 19:52:23] 2025-10-12 23:51:47,695 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:52:23] 2025-10-12 23:51:47,862 | INFO     | time since job start (3764s) is within the limit (172800.0s)
[2025-10-12 19:52:23] 2025-10-12 23:51:49,010 | INFO     | PID=23752 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 19:52:23] 2025-10-12 23:51:49,010 | INFO     | .. there are 2 such processes running
[2025-10-12 19:52:23] 2025-10-12 23:51:50,011 | INFO     | time since job start (3767s) is within the limit (172800.0s)
[2025-10-12 19:52:23] 2025-10-12 23:51:50,198 | INFO     | monitor loop #285: job 0:6840537558 is in state 'finished'
[2025-10-12 19:52:23] 2025-10-12 23:51:50,199 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:52:23] 2025-10-12 23:51:50,679 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 19:52:23] 2025-10-12 23:51:50,683 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 1996.3159999999998
[2025-10-12 19:52:23] 2025-10-12 23:51:50,687 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840537558/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:52:23] 2025-10-12 23:51:50,688 | INFO     | extracted standard info from prmon json
[2025-10-12 19:52:23] 2025-10-12 23:51:50,688 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 19:52:23] 2025-10-12 23:51:50,688 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:52:23] 2025-10-12 23:51:50,688 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:52:23] 2025-10-12 23:51:50,688 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:52:23] 2025-10-12 23:51:50,689 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:52:23] 2025-10-12 23:51:50,689 | INFO     | sum of square deviations: 51573060.0
[2025-10-12 19:52:23] 2025-10-12 23:51:50,690 | INFO     | sum of deviations: -5200805404.999999
[2025-10-12 19:52:23] 2025-10-12 23:51:50,690 | INFO     | mean x: 1760311320.0
[2025-10-12 19:52:23] 2025-10-12 23:51:50,690 | INFO     | mean y: 2626581.418181818
[2025-10-12 19:52:23] 2025-10-12 23:51:50,690 | INFO     | -- intersect: 177518496834.9708
[2025-10-12 19:52:23] 2025-10-12 23:51:50,690 | INFO     | intersect: 177518496834.9708
[2025-10-12 19:52:23] 2025-10-12 23:51:50,690 | INFO     | chi2: 0.016274122898214515
[2025-10-12 19:52:23] 2025-10-12 23:51:50,690 | INFO     | -- intersect: 177518496834.9708
[2025-10-12 19:52:23] 2025-10-12 23:51:50,690 | INFO     | current memory leak: -100.84 B/s (using 55 data points, chi2=0.02)
[2025-10-12 19:52:23] 2025-10-12 23:51:50,690 | INFO     | could have reported an average CPU frequency of 2221 MHz (6 samples)
[2025-10-12 19:52:23] 2025-10-12 23:51:50,691 | INFO     | ..............................
[2025-10-12 19:52:23] 2025-10-12 23:51:50,691 | INFO     | . Timing measurements:
[2025-10-12 19:52:23] 2025-10-12 23:51:50,691 | INFO     | . get job = 0 s
[2025-10-12 19:52:23] 2025-10-12 23:51:50,691 | INFO     | . initial setup = 2 s
[2025-10-12 19:52:23] 2025-10-12 23:51:50,691 | INFO     | . payload setup = 5 s
[2025-10-12 19:52:23] 2025-10-12 23:51:50,691 | INFO     | . stage-in = 0 s
[2025-10-12 19:52:23] 2025-10-12 23:51:50,691 | INFO     | . payload execution = 3732 s
[2025-10-12 19:52:23] 2025-10-12 23:51:50,691 | INFO     | . stage-out = 0 s
[2025-10-12 19:52:23] 2025-10-12 23:51:50,691 | INFO     | . log creation = 0 s
[2025-10-12 19:52:23] 2025-10-12 23:51:50,691 | INFO     | ..............................
[2025-10-12 19:52:23] 2025-10-12 23:51:50,744 | INFO     | 
[2025-10-12 19:52:23] 2025-10-12 23:51:50,744 | INFO     | job summary report
[2025-10-12 19:52:23] 2025-10-12 23:51:50,744 | INFO     | --------------------------------------------------
[2025-10-12 19:52:23] 2025-10-12 23:51:50,744 | INFO     | PanDA job id: 6840537558
[2025-10-12 19:52:23] 2025-10-12 23:51:50,744 | INFO     | task id: 46676269
[2025-10-12 19:52:23] 2025-10-12 23:51:50,744 | INFO     | errors: (none)
[2025-10-12 19:52:23] 2025-10-12 23:51:50,745 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:52:23] 2025-10-12 23:51:50,745 | INFO     | pilot state: finished 
[2025-10-12 19:52:23] 2025-10-12 23:51:50,745 | INFO     | transexitcode: 0
[2025-10-12 19:52:23] 2025-10-12 23:51:50,745 | INFO     | exeerrorcode: 0
[2025-10-12 19:52:23] 2025-10-12 23:51:50,745 | INFO     | exeerrordiag: 
[2025-10-12 19:52:23] 2025-10-12 23:51:50,745 | INFO     | exitcode: 0
[2025-10-12 19:52:23] 2025-10-12 23:51:50,745 | INFO     | exitmsg: OK
[2025-10-12 19:52:23] 2025-10-12 23:51:50,745 | INFO     | cpuconsumptiontime: 27773 s
[2025-10-12 19:52:23] 2025-10-12 23:51:50,746 | INFO     | nevents: 400
[2025-10-12 19:52:23] 2025-10-12 23:51:50,746 | INFO     | neventsw: 0
[2025-10-12 19:52:23] 2025-10-12 23:51:50,746 | INFO     | pid: 30201
[2025-10-12 19:52:23] 2025-10-12 23:51:50,746 | INFO     | pgrp: 30201
[2025-10-12 19:52:23] 2025-10-12 23:51:50,746 | INFO     | corecount: 8
[2025-10-12 19:52:23] 2025-10-12 23:51:50,746 | INFO     | event service: False
[2025-10-12 19:52:23] 2025-10-12 23:51:50,746 | INFO     | sizes: {0: 2348683, 1: 2348882, 5: 2349144, 11: 2349200, 3743: 2384013, 3747: 2384013, 3753: 2384335}
[2025-10-12 19:52:23] 2025-10-12 23:51:50,746 | INFO     | --------------------------------------------------
[2025-10-12 19:52:23] 2025-10-12 23:51:50,747 | INFO     | 
[2025-10-12 19:52:23] 2025-10-12 23:51:50,747 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 19:52:23] 2025-10-12 23:51:50,769 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,769 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,770 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,770 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,770 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,770 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,770 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,770 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,770 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,770 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,771 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,771 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,771 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,771 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,771 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,771 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,771 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,771 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:52:23] 2025-10-12 23:51:50,772 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,772 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:52:23] 2025-10-12 23:51:50,772 | INFO     | job 6840537558 has completed (purged errors)
[2025-10-12 19:52:23] 2025-10-12 23:51:50,772 | INFO     | overall cleanup function is called
[2025-10-12 19:52:23] 2025-10-12 23:51:51,780 | INFO     | --- collectZombieJob: --- 10, [30201]
[2025-10-12 19:52:23] 2025-10-12 23:51:51,780 | INFO     | zombie collector waiting for pid 30201
[2025-10-12 19:52:23] 2025-10-12 23:51:51,781 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:52:23] 2025-10-12 23:51:51,781 | INFO     | collected zombie processes
[2025-10-12 19:52:23] 2025-10-12 23:51:51,781 | INFO     | will attempt to kill all subprocesses of pid=30201
[2025-10-12 19:52:23] 2025-10-12 23:51:51,903 | INFO     | process IDs to be killed: [30201] (in reverse order)
[2025-10-12 19:52:23] 2025-10-12 23:51:51,956 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:52:23] 2025-10-12 23:51:51,957 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:52:23] 2025-10-12 23:51:51,961 | INFO     | did not find any defunct processes belonging to 30201
[2025-10-12 19:52:23] 2025-10-12 23:51:51,964 | INFO     | did not find any defunct processes belonging to 30201
[2025-10-12 19:52:23] 2025-10-12 23:51:51,964 | INFO     | ready for new job
[2025-10-12 19:52:23] 2025-10-12 23:51:51,965 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:52:23] 2025-10-12 23:51:51,966 | INFO     | ***************************************
[2025-10-12 19:52:23] 2025-10-12 23:51:51,967 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:52:23] 2025-10-12 23:51:51,967 | INFO     | ***************************************
[2025-10-12 19:52:23] 2025-10-12 23:51:51,967 | INFO     | 
[2025-10-12 19:52:23] 2025-10-12 23:51:51,968 | INFO     | architecture information:
[2025-10-12 19:52:23] 2025-10-12 23:51:51,968 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:52:23] 2025-10-12 23:51:51,981 | INFO     | cat /etc/os-release:
[2025-10-12 19:52:23] NAME="CentOS Linux"
[2025-10-12 19:52:23] VERSION="7 (Core)"
[2025-10-12 19:52:23] ID="centos"
[2025-10-12 19:52:23] ID_LIKE="rhel fedora"
[2025-10-12 19:52:23] VERSION_ID="7"
[2025-10-12 19:52:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:52:23] ANSI_COLOR="0;31"
[2025-10-12 19:52:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:52:23] HOME_URL="https://www.centos.org/"
[2025-10-12 19:52:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:52:23] 
[2025-10-12 19:52:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:52:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:52:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:52:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:52:23] 
[2025-10-12 19:52:23] 2025-10-12 23:51:51,982 | INFO     | ***************************************
[2025-10-12 19:52:23] 2025-10-12 23:51:52,485 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 19:52:23] 2025-10-12 23:51:52,502 | INFO     | sufficient remaining disk space (32843497472 B)
[2025-10-12 19:52:23] 2025-10-12 23:51:52,503 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:52:23] 2025-10-12 23:51:52,503 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:52:23] 2025-10-12 23:51:52,503 | INFO     | update_server=False
[2025-10-12 19:52:23] 2025-10-12 23:51:52,503 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:52:23] 2025-10-12 23:51:52,504 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:52:23] 2025-10-12 23:51:52,504 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:52:23] 2025-10-12 23:51:52,702 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 19:52:23] 2025-10-12 23:51:52,702 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 19:52:23] 2025-10-12 23:51:52,702 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:52:23] 2025-10-12 23:51:52,702 | INFO     | will abort loop
[2025-10-12 19:52:23] 2025-10-12 23:51:52,850 | INFO     | all data control threads have been joined
[2025-10-12 19:52:23] 2025-10-12 23:51:53,509 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:52:23] 2025-10-12 23:51:53,510 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:52:23] 2025-10-12 23:51:53,686 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:52:23] 2025-10-12 23:51:53,708 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:52:23] 2025-10-12 23:51:53,735 | INFO     | all payload control threads have been joined
[2025-10-12 19:52:23] 2025-10-12 23:51:53,769 | INFO     | all job control threads have been joined
[2025-10-12 19:52:23] 2025-10-12 23:51:53,855 | INFO     | [data] control thread has finished
[2025-10-12 19:52:23] 2025-10-12 23:51:54,035 | INFO     | [job] validate thread has finished
[2025-10-12 19:52:23] 2025-10-12 23:51:54,108 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:52:23] 2025-10-12 23:51:54,510 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:52:23] 2025-10-12 23:51:54,575 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:52:23] 2025-10-12 23:51:54,650 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:52:23] 2025-10-12 23:51:54,672 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:52:23] 2025-10-12 23:51:54,740 | INFO     | [payload] control thread has finished
[2025-10-12 19:52:23] 2025-10-12 23:51:54,774 | INFO     | [job] control thread has finished
[2025-10-12 19:52:23] 2025-10-12 23:51:55,073 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:52:23] 2025-10-12 23:51:55,396 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:52:23] 2025-10-12 23:51:59,402 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:52:23] 2025-10-12 23:52:02,786 | INFO     | job.realtimelogging is not enabled
[2025-10-12 19:52:23] 2025-10-12 23:52:03,790 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:52:23] 2025-10-12 23:52:08,618 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:52:23] 2025-10-12 23:52:10,222 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140103494469440)>', '<ExcThread(monitor, started 140103200515840)>']
[2025-10-12 19:52:23] 2025-10-12 23:52:15,241 | INFO     | all workflow threads have been joined
[2025-10-12 19:52:23] 2025-10-12 23:52:15,241 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:52:23] 2025-10-12 23:52:15,241 | INFO     | traces error code: 0
[2025-10-12 19:52:23] 2025-10-12 23:52:15,242 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:52:23] 2025-10-12 23:52:22,094 | INFO     | 3771s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 19:52:23] 2025-10-12 23:52:23,244 | INFO     | PID=23752 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 19:52:23] 2025-10-12 23:52:23,245 | INFO     | .. there are 2 such processes running
[2025-10-12 19:52:23] 2025-10-12 23:52:23,245 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:52:23] 2025-10-12 23:52:23,245 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:52:23] 2025-10-12 23:52:23,245 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:52:23] 2025-10-12 23:52:23,245 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:52:23] 2025-10-12 23:52:23,245 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 19:52:23] 2025-10-12 23:52:23,245 | INFO     | [monitor] control thread has ended
[2025-10-12 19:52:23] 2025-10-12 23:52:23,345 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:52:23] 2025-10-12 23:52:23,348 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:52:23] 2025-10-12 23:52:23,352 [wrapper] pilotpid: 23752
[2025-10-12 19:52:23] 2025-10-12 23:52:23,355 [wrapper] Pilot exit status: 0
[2025-10-12 19:52:23] 2025-10-12 23:52:23,367 [wrapper] pandaids: 6840537558
[2025-10-12 19:52:23] 2025-10-12 23:52:23,411 [wrapper] cleanup supervisor_pilot 16220 23753
[2025-10-12 19:52:23] 2025-10-12 23:52:23,415 [wrapper] Test setup, not cleaning
[2025-10-12 19:52:23] 2025-10-12 23:52:23,419 [wrapper] apfmon messages muted
[2025-10-12 19:52:23] 2025-10-12 23:52:23,422 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:52:23] 2025-10-12 23:52:23,426 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:52:23]  *** Error codes and diagnostics ***
[2025-10-12 19:52:23]     "exeErrorCode": 0,
[2025-10-12 19:52:23]     "exeErrorDiag": "",
[2025-10-12 19:52:23]     "pilotErrorCode": 0,
[2025-10-12 19:52:23]     "pilotErrorDiag": "",
[2025-10-12 19:52:23]  *** Listing of results directory ***
[2025-10-12 19:52:23] total 404796
[2025-10-12 19:52:23] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 14:53 pilot3.tar.gz
[2025-10-12 19:52:23] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 14:55 queuedata.json
[2025-10-12 19:52:23] -rwx------ 1 boincer umatlas     36292 Oct 12 14:55 runpilot2-wrapper.sh
[2025-10-12 19:52:23] -rw-r--r-- 1 boincer umatlas       100 Oct 12 18:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:52:23] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 18:48 run_atlas
[2025-10-12 19:52:23] -rw-r--r-- 1 boincer umatlas       105 Oct 12 18:48 job.xml
[2025-10-12 19:52:23] -rw-r--r-- 2 boincer umatlas 218263967 Oct 12 18:48 EVNT.46676267._004428.pool.root.1
[2025-10-12 19:52:23] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 18:48 start_atlas.sh
[2025-10-12 19:52:23] drwxrwx--x 2 boincer umatlas      4096 Oct 12 18:48 shared
[2025-10-12 19:52:23] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 18:48 input.tar.gz
[2025-10-12 19:52:23] -rw-r--r-- 1 boincer umatlas         0 Oct 12 18:48 boinc_lockfile
[2025-10-12 19:52:23] -rw-r--r-- 1 boincer umatlas      2548 Oct 12 18:48 pandaJob.out
[2025-10-12 19:52:23] -rw------- 1 boincer umatlas    975603 Oct 12 18:49 agis_schedconf.cvmfs.json
[2025-10-12 19:52:23] -rw------- 1 boincer umatlas   1560580 Oct 12 18:49 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:52:23] drwx------ 5 boincer umatlas      4096 Oct 12 18:49 pilot3
[2025-10-12 19:52:23] -rw-r--r-- 1 boincer umatlas      6135 Oct 12 19:49 init_data.xml
[2025-10-12 19:52:23] -rw------- 1 boincer umatlas 190602771 Oct 12 19:51 HITS.46676269._086705.pool.root.1
[2025-10-12 19:52:23] -rw------- 1 boincer umatlas      1059 Oct 12 19:51 memory_monitor_summary.json
[2025-10-12 19:52:23] -rw------- 1 boincer umatlas    300481 Oct 12 19:51 log.46676269._086705.job.log.tgz.1
[2025-10-12 19:52:23] -rw-r--r-- 1 boincer umatlas       529 Oct 12 19:51 boinc_task_state.xml
[2025-10-12 19:52:23] -rw------- 1 boincer umatlas        95 Oct 12 19:51 pilot_heartbeat.json
[2025-10-12 19:52:23] -rw------- 1 boincer umatlas      7844 Oct 12 19:51 heartbeat.json
[2025-10-12 19:52:23] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 19:52 boinc_mmap_file
[2025-10-12 19:52:23] -rw-r--r-- 1 boincer umatlas        27 Oct 12 19:52 wrapper_checkpoint.txt
[2025-10-12 19:52:23] -rw------- 1 boincer umatlas      1005 Oct 12 19:52 pilotlog.txt
[2025-10-12 19:52:23] -rw------- 1 boincer umatlas    569755 Oct 12 19:52 log.46676269._086705.job.log.1
[2025-10-12 19:52:23] -rw------- 1 boincer umatlas       357 Oct 12 19:52 output.list
[2025-10-12 19:52:23] -rw-r--r-- 1 boincer umatlas       620 Oct 12 19:52 runtime_log
[2025-10-12 19:52:23] -rw------- 1 boincer umatlas    890880 Oct 12 19:52 result.tar.gz
[2025-10-12 19:52:23] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 19:52 runtime_log.err
[2025-10-12 19:52:23] -rw------- 1 boincer umatlas       657 Oct 12 19:52 orFODmSPGS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmKjUMDmbrBhln.diag
[2025-10-12 19:52:23] -rw-r--r-- 1 boincer umatlas     22347 Oct 12 19:52 stderr.txt
[2025-10-12 19:52:23] HITS file was successfully produced:
[2025-10-12 19:52:23] -rw------- 1 boincer umatlas 190602771 Oct 12 19:51 shared/HITS.pool.root.1
[2025-10-12 19:52:23]  *** Contents of shared directory: ***
[2025-10-12 19:52:23] total 400740
[2025-10-12 19:52:23] -rw-r--r-- 2 boincer umatlas 218263967 Oct 12 18:48 ATLAS.root_0
[2025-10-12 19:52:23] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 18:48 start_atlas.sh
[2025-10-12 19:52:23] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 18:48 input.tar.gz
[2025-10-12 19:52:23] -rw------- 1 boincer umatlas 190602771 Oct 12 19:51 HITS.pool.root.1
[2025-10-12 19:52:23] -rw------- 1 boincer umatlas    890880 Oct 12 19:52 result.tar.gz
19:52:24 (20080): run_atlas exited; CPU time 27782.752053
19:52:24 (20080): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN