Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:40:13 (2631647): wrapper (7.7.26015): starting
10:40:13 (2631647): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 10:40:13] Arguments: --nthreads 3
[2025-10-13 10:40:13] Threads: 3
[2025-10-13 10:40:13] Checking for CVMFS
[2025-10-13 10:40:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 10:40:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 10:40:13] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 10:40:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 10:40:14] 2.9.2.0 1010855 5432 84152 151654 3 57 24682404 36864000 0 130560 0 4268453 99.991 186649 712 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 10:40:14] CVMFS is ok
[2025-10-13 10:40:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 10:40:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 10:40:14] Further information can be found at the LHC@home message board.
[2025-10-13 10:40:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 10:40:14] Checking for apptainer binary...
[2025-10-13 10:40:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 10:40:14] Running /usr/bin/apptainer --version
[2025-10-13 10:40:14] apptainer version 1.4.1-1.1
[2025-10-13 10:40:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 10:40:14] magicA246b
[2025-10-13 10:40:14] apptainer works
[2025-10-13 10:40:14] Set ATHENA_PROC_NUMBER=3
[2025-10-13 10:40:14] Set ATHENA_CORE_NUMBER=3
[2025-10-13 10:40:14] Starting ATLAS job with PandaID=6840711516
[2025-10-13 10:40:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 12:03:30]  *** The last 200 lines of the pilot log: ***
[2025-10-13 12:03:30] 2025-10-13 10:02:57,979 | INFO     | zombie collector waiting for pid 2641805
[2025-10-13 12:03:30] 2025-10-13 10:02:57,979 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 12:03:30] 2025-10-13 10:02:57,979 | INFO     | collected zombie processes
[2025-10-13 12:03:30] 2025-10-13 10:02:57,979 | INFO     | will attempt to kill all subprocesses of pid=2641805
[2025-10-13 12:03:30] 2025-10-13 10:02:58,022 | INFO     | process IDs to be killed: [2641805] (in reverse order)
[2025-10-13 12:03:30] 2025-10-13 10:02:58,046 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 12:03:30] 2025-10-13 10:02:58,046 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 12:03:30] 2025-10-13 10:02:58,047 | INFO     | did not find any defunct processes belonging to 2641805
[2025-10-13 12:03:30] 2025-10-13 10:02:58,048 | INFO     | did not find any defunct processes belonging to 2641805
[2025-10-13 12:03:30] 2025-10-13 10:02:58,048 | INFO     | ready for new job
[2025-10-13 12:03:30] 2025-10-13 10:02:58,048 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 12:03:30] 2025-10-13 10:02:58,049 | INFO     | ***************************************
[2025-10-13 12:03:30] 2025-10-13 10:02:58,049 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 12:03:30] 2025-10-13 10:02:58,049 | INFO     | ***************************************
[2025-10-13 12:03:30] 2025-10-13 10:02:58,049 | INFO     | 
[2025-10-13 12:03:30] 2025-10-13 10:02:58,049 | INFO     | architecture information:
[2025-10-13 12:03:30] 2025-10-13 10:02:58,049 | INFO     | executing command: cat /etc/os-release
[2025-10-13 12:03:30] 2025-10-13 10:02:58,058 | INFO     | cat /etc/os-release:
[2025-10-13 12:03:30] NAME="CentOS Linux"
[2025-10-13 12:03:30] VERSION="7 (Core)"
[2025-10-13 12:03:30] ID="centos"
[2025-10-13 12:03:30] ID_LIKE="rhel fedora"
[2025-10-13 12:03:30] VERSION_ID="7"
[2025-10-13 12:03:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 12:03:30] ANSI_COLOR="0;31"
[2025-10-13 12:03:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 12:03:30] HOME_URL="https://www.centos.org/"
[2025-10-13 12:03:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 12:03:30] 
[2025-10-13 12:03:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 12:03:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 12:03:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 12:03:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 12:03:30] 
[2025-10-13 12:03:30] 2025-10-13 10:02:58,058 | INFO     | ***************************************
[2025-10-13 12:03:30] 2025-10-13 10:02:58,561 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 12:03:30] 2025-10-13 10:02:58,574 | INFO     | sufficient remaining disk space (375682760704 B)
[2025-10-13 12:03:30] 2025-10-13 10:02:58,574 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 12:03:30] 2025-10-13 10:02:58,574 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 12:03:30] 2025-10-13 10:02:58,574 | INFO     | update_server=False
[2025-10-13 12:03:30] 2025-10-13 10:02:58,574 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 12:03:30] 2025-10-13 10:02:58,574 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:03:30] 2025-10-13 10:02:58,574 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 12:03:30] 2025-10-13 10:02:58,574 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:03:30] 2025-10-13 10:02:58,575 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 12:03:30] 2025-10-13 10:02:58,575 | INFO     | aborting loop
[2025-10-13 12:03:30] 2025-10-13 10:02:58,575 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 12:03:30] 2025-10-13 10:02:58,575 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 12:03:30] 2025-10-13 10:02:58,912 | INFO     | all payload control threads have been joined
[2025-10-13 12:03:30] 2025-10-13 10:02:59,064 | INFO     | all data control threads have been joined
[2025-10-13 12:03:30] 2025-10-13 10:02:59,082 | INFO     | all job control threads have been joined
[2025-10-13 12:03:30] 2025-10-13 10:02:59,372 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 12:03:30] 2025-10-13 10:02:59,580 | INFO     | [job] retrieve thread has finished
[2025-10-13 12:03:30] 2025-10-13 10:02:59,580 | INFO     | [job] job monitor thread has finished
[2025-10-13 12:03:30] 2025-10-13 10:02:59,580 | INFO     | [job] queue monitor thread has finished
[2025-10-13 12:03:30] 2025-10-13 10:02:59,809 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 12:03:30] 2025-10-13 10:02:59,917 | INFO     | [payload] control thread has finished
[2025-10-13 12:03:30] 2025-10-13 10:03:00,069 | INFO     | [data] control thread has finished
[2025-10-13 12:03:30] 2025-10-13 10:03:00,088 | INFO     | [job] control thread has finished
[2025-10-13 12:03:30] 2025-10-13 10:03:00,231 | INFO     | [payload] failed_post thread has finished
[2025-10-13 12:03:30] 2025-10-13 10:03:00,280 | INFO     | [data] copytool_in thread has finished
[2025-10-13 12:03:30] 2025-10-13 10:03:00,750 | INFO     | [payload] validate_post thread has finished
[2025-10-13 12:03:30] 2025-10-13 10:03:00,816 | INFO     | [job] validate thread has finished
[2025-10-13 12:03:30] 2025-10-13 10:03:00,881 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 12:03:30] 2025-10-13 10:03:00,963 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 12:03:30] 2025-10-13 10:03:00,970 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 12:03:30] 2025-10-13 10:03:01,378 | INFO     | [data] copytool_out thread has finished
[2025-10-13 12:03:30] 2025-10-13 10:03:01,899 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 12:03:30] 2025-10-13 10:03:05,906 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 12:03:30] 2025-10-13 10:03:25,135 | INFO     | [monitor] cgroup control has ended
[2025-10-13 12:03:30] 2025-10-13 10:03:25,448 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140336039987008)>', '<ExcThread(monitor, started 140335095211776)>']
[2025-10-13 12:03:30] 2025-10-13 10:03:25,712 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 12:03:30] 2025-10-13 10:03:25,712 | INFO     | [monitor] control thread has ended
[2025-10-13 12:03:30] 2025-10-13 10:03:30,473 | INFO     | all workflow threads have been joined
[2025-10-13 12:03:30] 2025-10-13 10:03:30,474 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 12:03:30] 2025-10-13 10:03:30,474 | INFO     | traces error code: 0
[2025-10-13 12:03:30] 2025-10-13 10:03:30,474 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 12:03:30] 2025-10-13 10:03:30,522 [wrapper] ==== pilot stdout END ====
[2025-10-13 12:03:30] 2025-10-13 10:03:30,524 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 12:03:30] 2025-10-13 10:03:30,527 [wrapper] pilotpid: 2635366
[2025-10-13 12:03:30] 2025-10-13 10:03:30,529 [wrapper] Pilot exit status: 0
[2025-10-13 12:03:30] 2025-10-13 10:03:30,536 [wrapper] pandaids: 6840711516
[2025-10-13 12:03:30] 2025-10-13 10:03:30,551 [wrapper] cleanup supervisor_pilot 2653682 2635367
[2025-10-13 12:03:30] 2025-10-13 10:03:30,553 [wrapper] Test setup, not cleaning
[2025-10-13 12:03:30] 2025-10-13 10:03:30,556 [wrapper] apfmon messages muted
[2025-10-13 12:03:30] 2025-10-13 10:03:30,558 [wrapper] ==== wrapper stdout END ====
[2025-10-13 12:03:30] 2025-10-13 10:03:30,560 [wrapper] ==== wrapper stderr END ====
[2025-10-13 12:03:30]  *** Error codes and diagnostics ***
[2025-10-13 12:03:30]     "exeErrorCode": 0,
[2025-10-13 12:03:30]     "exeErrorDiag": "",
[2025-10-13 12:03:30]     "pilotErrorCode": 0,
[2025-10-13 12:03:30]     "pilotErrorDiag": "",
[2025-10-13 12:03:30]  *** Listing of results directory ***
[2025-10-13 12:03:30] total 409096
[2025-10-13 12:03:30] -rw-r--r-- 1 boinc boinc    557409 Oct 12 20:53 pilot3.tar.gz
[2025-10-13 12:03:30] -rw-r--r-- 1 boinc boinc      5112 Oct 12 21:09 queuedata.json
[2025-10-13 12:03:30] -rwx------ 1 boinc boinc     36292 Oct 12 21:09 runpilot2-wrapper.sh
[2025-10-13 12:03:30] -rw-r--r-- 1 boinc boinc       100 Oct 13 10:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 12:03:30] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 10:40 run_atlas
[2025-10-13 12:03:30] -rw-r--r-- 1 boinc boinc       105 Oct 13 10:40 job.xml
[2025-10-13 12:03:30] -rw-r--r-- 2 boinc boinc 220185547 Oct 13 10:40 EVNT.46676267._001644.pool.root.1
[2025-10-13 12:03:30] -rw-r--r-- 2 boinc boinc    569684 Oct 13 10:40 input.tar.gz
[2025-10-13 12:03:30] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:40 start_atlas.sh
[2025-10-13 12:03:30] drwxrwx--x 2 boinc boinc      4096 Oct 13 10:40 shared
[2025-10-13 12:03:30] -rw-r--r-- 1 boinc boinc         0 Oct 13 10:40 boinc_setup_complete
[2025-10-13 12:03:30] -rw-r--r-- 1 boinc boinc      6448 Oct 13 10:40 init_data.xml
[2025-10-13 12:03:30] -rw-r--r-- 1 boinc boinc         0 Oct 13 10:40 boinc_lockfile
[2025-10-13 12:03:30] -rw-r--r-- 1 boinc boinc      2550 Oct 13 10:40 pandaJob.out
[2025-10-13 12:03:30] -rw------- 1 boinc boinc    972857 Oct 13 10:40 agis_schedconf.cvmfs.json
[2025-10-13 12:03:30] -rw------- 1 boinc boinc   1560580 Oct 13 10:40 agis_ddmendpoints.agis.ALL.json
[2025-10-13 12:03:30] drwx------ 5 boinc boinc      4096 Oct 13 10:40 pilot3
[2025-10-13 12:03:30] -rw------- 1 boinc boinc 192884302 Oct 13 12:02 HITS.46676269._087084.pool.root.1
[2025-10-13 12:03:30] -rw-r--r-- 1 boinc boinc       529 Oct 13 12:02 boinc_task_state.xml
[2025-10-13 12:03:30] -rw------- 1 boinc boinc        95 Oct 13 12:02 pilot_heartbeat.json
[2025-10-13 12:03:30] -rw------- 1 boinc boinc      1018 Oct 13 12:02 memory_monitor_summary.json
[2025-10-13 12:03:30] -rw------- 1 boinc boinc    250322 Oct 13 12:02 log.46676269._087084.job.log.tgz.1
[2025-10-13 12:03:30] -rw------- 1 boinc boinc      7763 Oct 13 12:02 heartbeat.json
[2025-10-13 12:03:30] -rw-r--r-- 1 boinc boinc        27 Oct 13 12:03 wrapper_checkpoint.txt
[2025-10-13 12:03:30] -rw-r--r-- 1 boinc boinc      8192 Oct 13 12:03 boinc_mmap_file
[2025-10-13 12:03:30] -rw------- 1 boinc boinc      4556 Oct 13 12:03 pilotlog.txt
[2025-10-13 12:03:30] -rw------- 1 boinc boinc    728976 Oct 13 12:03 log.46676269._087084.job.log.1
[2025-10-13 12:03:30] -rw------- 1 boinc boinc       357 Oct 13 12:03 output.list
[2025-10-13 12:03:30] -rw-r--r-- 1 boinc boinc       620 Oct 13 12:03 runtime_log
[2025-10-13 12:03:30] -rw------- 1 boinc boinc    993280 Oct 13 12:03 result.tar.gz
[2025-10-13 12:03:30] -rw-r--r-- 1 boinc boinc      8797 Oct 13 12:03 runtime_log.err
[2025-10-13 12:03:30] -rw------- 1 boinc boinc       662 Oct 13 12:03 WxtLDmzcGS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmzkUMDmsepHGo.diag
[2025-10-13 12:03:30] -rw-r--r-- 1 boinc boinc     10440 Oct 13 12:03 stderr.txt
[2025-10-13 12:03:30] HITS file was successfully produced:
[2025-10-13 12:03:30] -rw------- 1 boinc boinc 192884302 Oct 13 12:02 shared/HITS.pool.root.1
[2025-10-13 12:03:30]  *** Contents of shared directory: ***
[2025-10-13 12:03:30] total 404948
[2025-10-13 12:03:30] -rw-r--r-- 2 boinc boinc 220185547 Oct 13 10:40 ATLAS.root_0
[2025-10-13 12:03:30] -rw-r--r-- 2 boinc boinc    569684 Oct 13 10:40 input.tar.gz
[2025-10-13 12:03:30] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:40 start_atlas.sh
[2025-10-13 12:03:30] -rw------- 1 boinc boinc 192884302 Oct 13 12:02 HITS.pool.root.1
[2025-10-13 12:03:30] -rw------- 1 boinc boinc    993280 Oct 13 12:03 result.tar.gz
12:03:32 (2631647): run_atlas exited; CPU time 14214.737167
12:03:32 (2631647): called boinc_finish(0)

</stderr_txt>
]]>

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