Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:14:07 (3415336): wrapper (7.7.26015): starting
09:14:07 (3415336): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 09:14:07] Arguments: --nthreads 3
[2025-10-13 09:14:07] Threads: 3
[2025-10-13 09:14:07] Checking for CVMFS
[2025-10-13 09:14:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 09:14:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 09:14:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 09:14:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 09:14:08] 2.9.2.0 1827752 5320 87008 151653 3 1 29530657 36864000 0 130560 0 4137756 99.991 189286 712 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 09:14:08] CVMFS is ok
[2025-10-13 09:14:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 09:14:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 09:14:08] Further information can be found at the LHC@home message board.
[2025-10-13 09:14:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 09:14:08] Checking for apptainer binary...
[2025-10-13 09:14:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 09:14:08] Running /usr/bin/apptainer --version
[2025-10-13 09:14:08] apptainer version 1.4.1-1.1
[2025-10-13 09:14:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 09:14:08] thA305b
[2025-10-13 09:14:08] apptainer works
[2025-10-13 09:14:08] Set ATHENA_PROC_NUMBER=3
[2025-10-13 09:14:08] Set ATHENA_CORE_NUMBER=3
[2025-10-13 09:14:08] Starting ATLAS job with PandaID=6840537034
[2025-10-13 09:14:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 10:36:32]  *** The last 200 lines of the pilot log: ***
[2025-10-13 10:36:32] 2025-10-13 08:36:01,478 | INFO     | collected zombie processes
[2025-10-13 10:36:32] 2025-10-13 08:36:01,478 | INFO     | will attempt to kill all subprocesses of pid=3425494
[2025-10-13 10:36:32] 2025-10-13 08:36:01,527 | INFO     | process IDs to be killed: [3425494] (in reverse order)
[2025-10-13 10:36:32] 2025-10-13 08:36:01,554 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 10:36:32] 2025-10-13 08:36:01,554 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 10:36:32] 2025-10-13 08:36:01,556 | INFO     | did not find any defunct processes belonging to 3425494
[2025-10-13 10:36:32] 2025-10-13 08:36:01,557 | INFO     | did not find any defunct processes belonging to 3425494
[2025-10-13 10:36:32] 2025-10-13 08:36:01,557 | INFO     | ready for new job
[2025-10-13 10:36:32] 2025-10-13 08:36:01,557 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 10:36:32] 2025-10-13 08:36:01,558 | INFO     | ***************************************
[2025-10-13 10:36:32] 2025-10-13 08:36:01,558 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 10:36:32] 2025-10-13 08:36:01,558 | INFO     | ***************************************
[2025-10-13 10:36:32] 2025-10-13 08:36:01,558 | INFO     | 
[2025-10-13 10:36:32] 2025-10-13 08:36:01,558 | INFO     | architecture information:
[2025-10-13 10:36:32] 2025-10-13 08:36:01,558 | INFO     | executing command: cat /etc/os-release
[2025-10-13 10:36:32] 2025-10-13 08:36:01,567 | INFO     | cat /etc/os-release:
[2025-10-13 10:36:32] NAME="CentOS Linux"
[2025-10-13 10:36:32] VERSION="7 (Core)"
[2025-10-13 10:36:32] ID="centos"
[2025-10-13 10:36:32] ID_LIKE="rhel fedora"
[2025-10-13 10:36:32] VERSION_ID="7"
[2025-10-13 10:36:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 10:36:32] ANSI_COLOR="0;31"
[2025-10-13 10:36:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 10:36:32] HOME_URL="https://www.centos.org/"
[2025-10-13 10:36:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 10:36:32] 
[2025-10-13 10:36:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 10:36:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 10:36:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 10:36:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 10:36:32] 
[2025-10-13 10:36:32] 2025-10-13 08:36:01,568 | INFO     | ***************************************
[2025-10-13 10:36:32] 2025-10-13 08:36:02,071 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 10:36:32] 2025-10-13 08:36:02,084 | INFO     | sufficient remaining disk space (174744141824 B)
[2025-10-13 10:36:32] 2025-10-13 08:36:02,084 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 10:36:32] 2025-10-13 08:36:02,084 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 10:36:32] 2025-10-13 08:36:02,084 | INFO     | update_server=False
[2025-10-13 10:36:32] 2025-10-13 08:36:02,084 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 10:36:32] 2025-10-13 08:36:02,084 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 10:36:32] 2025-10-13 08:36:02,084 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 10:36:32] 2025-10-13 08:36:02,084 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:36:32] 2025-10-13 08:36:02,573 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:36:32] 2025-10-13 08:36:02,574 | INFO     | aborting loop
[2025-10-13 10:36:32] 2025-10-13 08:36:02,650 | INFO     | all payload control threads have been joined
[2025-10-13 10:36:32] 2025-10-13 08:36:02,780 | INFO     | all job control threads have been joined
[2025-10-13 10:36:32] 2025-10-13 08:36:03,070 | INFO     | all data control threads have been joined
[2025-10-13 10:36:32] 2025-10-13 08:36:03,090 | INFO     | [job] retrieve thread has finished
[2025-10-13 10:36:32] 2025-10-13 08:36:03,090 | INFO     | [job] queue monitor thread has finished
[2025-10-13 10:36:32] 2025-10-13 08:36:03,478 | INFO     | [payload] validate_post thread has finished
[2025-10-13 10:36:32] 2025-10-13 08:36:03,579 | INFO     | [job] job monitor thread has finished
[2025-10-13 10:36:32] 2025-10-13 08:36:03,608 | INFO     | [payload] failed_post thread has finished
[2025-10-13 10:36:32] 2025-10-13 08:36:03,656 | INFO     | [payload] control thread has finished
[2025-10-13 10:36:32] 2025-10-13 08:36:03,786 | INFO     | [job] control thread has finished
[2025-10-13 10:36:32] 2025-10-13 08:36:04,076 | INFO     | [data] control thread has finished
[2025-10-13 10:36:32] 2025-10-13 08:36:04,090 | INFO     | [data] copytool_out thread has finished
[2025-10-13 10:36:32] 2025-10-13 08:36:04,215 | INFO     | [data] copytool_in thread has finished
[2025-10-13 10:36:32] 2025-10-13 08:36:04,350 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 10:36:32] 2025-10-13 08:36:04,470 | INFO     | [job] validate thread has finished
[2025-10-13 10:36:32] 2025-10-13 08:36:04,547 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 10:36:32] 2025-10-13 08:36:04,551 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 10:36:32] 2025-10-13 08:36:04,580 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 10:36:32] 2025-10-13 08:36:06,091 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 10:36:32] 2025-10-13 08:36:20,671 | INFO     | [monitor] cgroup control has ended
[2025-10-13 10:36:32] 2025-10-13 08:36:20,765 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140501152188224)>', '<ExcThread(monitor, started 140500518561536)>']
[2025-10-13 10:36:32] 2025-10-13 08:36:25,790 | INFO     | all workflow threads have been joined
[2025-10-13 10:36:32] 2025-10-13 08:36:25,791 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 10:36:32] 2025-10-13 08:36:25,791 | INFO     | traces error code: 0
[2025-10-13 10:36:32] 2025-10-13 08:36:25,791 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 10:36:32] 2025-10-13 08:36:31,926 | INFO     | PID=3419060 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 10:36:32] 2025-10-13 08:36:31,927 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 10:36:32] 2025-10-13 08:36:31,927 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 10:36:32] 2025-10-13 08:36:31,927 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 10:36:32] 2025-10-13 08:36:31,927 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 10:36:32] 2025-10-13 08:36:31,927 | INFO     | [monitor] control thread has ended
[2025-10-13 10:36:32] 2025-10-13 08:36:31,975 [wrapper] ==== pilot stdout END ====
[2025-10-13 10:36:32] 2025-10-13 08:36:31,977 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 10:36:32] 2025-10-13 08:36:31,980 [wrapper] pilotpid: 3419060
[2025-10-13 10:36:32] 2025-10-13 08:36:31,982 [wrapper] Pilot exit status: 0
[2025-10-13 10:36:32] 2025-10-13 08:36:31,990 [wrapper] pandaids: 6840537034
[2025-10-13 10:36:32] 2025-10-13 08:36:32,008 [wrapper] cleanup supervisor_pilot 3437358 3419061
[2025-10-13 10:36:32] 2025-10-13 08:36:32,011 [wrapper] Test setup, not cleaning
[2025-10-13 10:36:32] 2025-10-13 08:36:32,013 [wrapper] apfmon messages muted
[2025-10-13 10:36:32] 2025-10-13 08:36:32,015 [wrapper] ==== wrapper stdout END ====
[2025-10-13 10:36:32] 2025-10-13 08:36:32,018 [wrapper] ==== wrapper stderr END ====
[2025-10-13 10:36:32]  *** Error codes and diagnostics ***
[2025-10-13 10:36:32]     "exeErrorCode": 0,
[2025-10-13 10:36:32]     "exeErrorDiag": "",
[2025-10-13 10:36:32]     "pilotErrorCode": 0,
[2025-10-13 10:36:32]     "pilotErrorDiag": "",
[2025-10-13 10:36:32]  *** Listing of results directory ***
[2025-10-13 10:36:32] total 412360
[2025-10-13 10:36:32] -rw-r--r-- 1 boinc boinc    557409 Oct 12 20:20 pilot3.tar.gz
[2025-10-13 10:36:32] -rw-r--r-- 1 boinc boinc      5112 Oct 12 20:43 queuedata.json
[2025-10-13 10:36:32] -rwx------ 1 boinc boinc     36292 Oct 12 20:43 runpilot2-wrapper.sh
[2025-10-13 10:36:32] -rw-r--r-- 1 boinc boinc       100 Oct 13 09:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 10:36:32] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 09:14 run_atlas
[2025-10-13 10:36:32] -rw-r--r-- 1 boinc boinc       105 Oct 13 09:14 job.xml
[2025-10-13 10:36:32] -rw-r--r-- 2 boinc boinc 221486275 Oct 13 09:14 EVNT.46676267._004418.pool.root.1
[2025-10-13 10:36:32] drwxrwx--x 2 boinc boinc      4096 Oct 13 09:14 shared
[2025-10-13 10:36:32] -rw-r--r-- 2 boinc boinc    569680 Oct 13 09:14 input.tar.gz
[2025-10-13 10:36:32] -rw-r--r-- 2 boinc boinc     15120 Oct 13 09:14 start_atlas.sh
[2025-10-13 10:36:32] -rw-r--r-- 1 boinc boinc         0 Oct 13 09:14 boinc_setup_complete
[2025-10-13 10:36:32] -rw-r--r-- 1 boinc boinc      6447 Oct 13 09:14 init_data.xml
[2025-10-13 10:36:32] -rw-r--r-- 1 boinc boinc         0 Oct 13 09:14 boinc_lockfile
[2025-10-13 10:36:32] -rw-r--r-- 1 boinc boinc      2546 Oct 13 09:14 pandaJob.out
[2025-10-13 10:36:32] -rw------- 1 boinc boinc    972849 Oct 13 09:14 agis_schedconf.cvmfs.json
[2025-10-13 10:36:32] -rw------- 1 boinc boinc   1560580 Oct 13 09:14 agis_ddmendpoints.agis.ALL.json
[2025-10-13 10:36:32] drwx------ 5 boinc boinc      4096 Oct 13 09:14 pilot3
[2025-10-13 10:36:32] -rw------- 1 boinc boinc 194970799 Oct 13 10:35 HITS.46676269._086453.pool.root.1
[2025-10-13 10:36:32] -rw------- 1 boinc boinc        95 Oct 13 10:35 pilot_heartbeat.json
[2025-10-13 10:36:32] -rw-r--r-- 1 boinc boinc       529 Oct 13 10:35 boinc_task_state.xml
[2025-10-13 10:36:32] -rw------- 1 boinc boinc      1017 Oct 13 10:35 memory_monitor_summary.json
[2025-10-13 10:36:32] -rw------- 1 boinc boinc    237137 Oct 13 10:35 log.46676269._086453.job.log.tgz.1
[2025-10-13 10:36:32] -rw------- 1 boinc boinc      7763 Oct 13 10:36 heartbeat.json
[2025-10-13 10:36:32] -rw-r--r-- 1 boinc boinc      8192 Oct 13 10:36 boinc_mmap_file
[2025-10-13 10:36:32] -rw-r--r-- 1 boinc boinc        27 Oct 13 10:36 wrapper_checkpoint.txt
[2025-10-13 10:36:32] -rw------- 1 boinc boinc       747 Oct 13 10:36 pilotlog.txt
[2025-10-13 10:36:32] -rw------- 1 boinc boinc    721103 Oct 13 10:36 log.46676269._086453.job.log.1
[2025-10-13 10:36:32] -rw------- 1 boinc boinc       357 Oct 13 10:36 output.list
[2025-10-13 10:36:32] -rw-r--r-- 1 boinc boinc       620 Oct 13 10:36 runtime_log
[2025-10-13 10:36:32] -rw------- 1 boinc boinc    972800 Oct 13 10:36 result.tar.gz
[2025-10-13 10:36:32] -rw-r--r-- 1 boinc boinc      8782 Oct 13 10:36 runtime_log.err
[2025-10-13 10:36:32] -rw------- 1 boinc boinc       659 Oct 13 10:36 LvzKDmzDGS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm17kNDmclPiCo.diag
[2025-10-13 10:36:32] -rw-r--r-- 1 boinc boinc     10281 Oct 13 10:36 stderr.txt
[2025-10-13 10:36:32] HITS file was successfully produced:
[2025-10-13 10:36:32] -rw------- 1 boinc boinc 194970799 Oct 13 10:35 shared/HITS.pool.root.1
[2025-10-13 10:36:32]  *** Contents of shared directory: ***
[2025-10-13 10:36:32] total 408236
[2025-10-13 10:36:32] -rw-r--r-- 2 boinc boinc 221486275 Oct 13 09:14 ATLAS.root_0
[2025-10-13 10:36:32] -rw-r--r-- 2 boinc boinc    569680 Oct 13 09:14 input.tar.gz
[2025-10-13 10:36:32] -rw-r--r-- 2 boinc boinc     15120 Oct 13 09:14 start_atlas.sh
[2025-10-13 10:36:32] -rw------- 1 boinc boinc 194970799 Oct 13 10:35 HITS.pool.root.1
[2025-10-13 10:36:32] -rw------- 1 boinc boinc    972800 Oct 13 10:36 result.tar.gz
10:36:33 (3415336): run_atlas exited; CPU time 14027.373943
10:36:33 (3415336): called boinc_finish(0)

</stderr_txt>
]]>

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