Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:56:35 (76719): wrapper (7.7.26015): starting
18:56:35 (76719): wrapper: running run_atlas (--nthreads 11)
[2025-10-12 18:56:35] Arguments: --nthreads 11
[2025-10-12 18:56:35] Threads: 11
[2025-10-12 18:56:35] Checking for CVMFS
[2025-10-12 18:56:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:56:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:56:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:56:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:56:35] 2.13.2.0 2216807 129871 423864 151640 1 188 35637539 40960001 2030 16776704 30 267643926 99.727 199487626 21781 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 18:56:35] CVMFS is ok
[2025-10-12 18:56:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:56:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:56:35] Further information can be found at the LHC@home message board.
[2025-10-12 18:56:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:56:35] Checking for apptainer binary...
[2025-10-12 18:56:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:56:35] Running /usr/bin/apptainer --version
[2025-10-12 18:56:35] apptainer version 1.4.3-1.el9
[2025-10-12 18:56:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:56:35] c7-11-11.aglt2.org
[2025-10-12 18:56:35] apptainer works
[2025-10-12 18:56:35] Set ATHENA_PROC_NUMBER=11
[2025-10-12 18:56:35] Set ATHENA_CORE_NUMBER=11
[2025-10-12 18:56:35] Starting ATLAS job with PandaID=6840536232
[2025-10-12 18:56:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:34:54]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:34:54]  protocol_id=None
[2025-10-12 19:34:54]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 19:34:54]  replicas=None
[2025-10-12 19:34:54]  scope=mc23_13p6TeV
[2025-10-12 19:34:54]  status=None
[2025-10-12 19:34:54]  status_code=0
[2025-10-12 19:34:54]  storage_token=
[2025-10-12 19:34:54]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840536232/log.46676269._086287.job.log.tgz.1
[2025-10-12 19:34:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ce/1e/log.46676269._086287.job.log.tgz.1
[2025-10-12 19:34:54]  workdir=None
[2025-10-12 19:34:54] ]
[2025-10-12 19:34:54] 2025-10-12 23:33:56,133 | INFO     | transferring file log.46676269._086287.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840536232/log.46676269._086287.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 19:34:54] 2025-10-12 23:33:56,133 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840536232/log.46676269._086287.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._086287.job
[2025-10-12 19:34:54] 2025-10-12 23:33:56,149 | INFO     | adding to output.list: log.46676269._086287.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ce/1e/log.46676269._086287.job.log.tg
[2025-10-12 19:34:54] 2025-10-12 23:33:56,150 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 19:34:54] 2025-10-12 23:33:56,150 | INFO     | summary of transferred files:
[2025-10-12 19:34:54] 2025-10-12 23:33:56,150 | INFO     |  -- lfn=log.46676269._086287.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 19:34:54] 2025-10-12 23:33:56,150 | INFO     | stage-out finished correctly
[2025-10-12 19:34:54] 2025-10-12 23:33:56,202 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 19:34:54] 2025-10-12 23:33:57,862 | INFO     | job 6840536232 has state=finished
[2025-10-12 19:34:54] 2025-10-12 23:33:57,862 | INFO     | preparing for final server update for job 6840536232 in state='finished'
[2025-10-12 19:34:54] 2025-10-12 23:33:57,863 | INFO     | this job has now completed (state=finished)
[2025-10-12 19:34:54] 2025-10-12 23:33:57,863 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 19:34:54] 2025-10-12 23:33:57,863 | INFO     | log transfer has been attempted: DONE
[2025-10-12 19:34:54] 2025-10-12 23:33:57,863 | INFO     | job 6840536232 has finished - writing final server update
[2025-10-12 19:34:54] 2025-10-12 23:33:57,863 | INFO     | total number of processed events: 400 (read)
[2025-10-12 19:34:54] 2025-10-12 23:33:57,863 | INFO     | executing command: lscpu
[2025-10-12 19:34:54] 2025-10-12 23:33:57,912 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 19:34:54] 2025-10-12 23:33:58,106 | INFO     | time since job start (2234s) is within the limit (172800.0s)
[2025-10-12 19:34:54] 2025-10-12 23:33:59,327 | WARNING  | process 86907 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 19:34:54] 2025-10-12 23:33:59,328 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840536232/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:34:54] 2025-10-12 23:33:59,505 | INFO     | number of running child processes to parent process 86907: 1
[2025-10-12 19:34:54] 2025-10-12 23:33:59,505 | INFO     | maximum number of monitored processes: 6
[2025-10-12 19:34:54] 2025-10-12 23:34:00,111 | INFO     | time since job start (2236s) is within the limit (172800.0s)
[2025-10-12 19:34:54] 2025-10-12 23:34:01,303 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 19:34:54] 2025-10-12 23:34:01,322 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3109.5987187499995
[2025-10-12 19:34:54] 2025-10-12 23:34:01,345 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840536232/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:34:54] 2025-10-12 23:34:01,346 | INFO     | extracted standard info from prmon json
[2025-10-12 19:34:54] 2025-10-12 23:34:01,346 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 19:34:54] 2025-10-12 23:34:01,347 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:34:54] 2025-10-12 23:34:01,347 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:34:54] 2025-10-12 23:34:01,347 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:34:54] 2025-10-12 23:34:01,349 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:34:54] 2025-10-12 23:34:01,349 | INFO     | sum of square deviations: 8362947.5
[2025-10-12 19:34:54] 2025-10-12 23:34:01,349 | INFO     | sum of deviations: -1027522521.5
[2025-10-12 19:34:54] 2025-10-12 23:34:01,349 | INFO     | mean x: 1760311016.5
[2025-10-12 19:34:54] 2025-10-12 23:34:01,349 | INFO     | mean y: 2437457.3
[2025-10-12 19:34:54] 2025-10-12 23:34:01,350 | INFO     | -- intersect: 216284940043.65582
[2025-10-12 19:34:54] 2025-10-12 23:34:01,350 | INFO     | intersect: 216284940043.65582
[2025-10-12 19:34:54] 2025-10-12 23:34:01,350 | INFO     | chi2: 0.023961335925752676
[2025-10-12 19:34:54] 2025-10-12 23:34:01,350 | INFO     | -- intersect: 216284940043.65582
[2025-10-12 19:34:54] 2025-10-12 23:34:01,350 | INFO     | current memory leak: -122.87 B/s (using 30 data points, chi2=0.02)
[2025-10-12 19:34:54] 2025-10-12 23:34:01,351 | INFO     | could have reported an average CPU frequency of 3116 MHz (5 samples)
[2025-10-12 19:34:54] 2025-10-12 23:34:01,351 | INFO     | ..............................
[2025-10-12 19:34:54] 2025-10-12 23:34:01,351 | INFO     | . Timing measurements:
[2025-10-12 19:34:54] 2025-10-12 23:34:01,351 | INFO     | . get job = 0 s
[2025-10-12 19:34:54] 2025-10-12 23:34:01,351 | INFO     | . initial setup = 2 s
[2025-10-12 19:34:54] 2025-10-12 23:34:01,351 | INFO     | . payload setup = 3 s
[2025-10-12 19:34:54] 2025-10-12 23:34:01,351 | INFO     | . stage-in = 0 s
[2025-10-12 19:34:54] 2025-10-12 23:34:01,352 | INFO     | . payload execution = 2208 s
[2025-10-12 19:34:54] 2025-10-12 23:34:01,352 | INFO     | . stage-out = 0 s
[2025-10-12 19:34:54] 2025-10-12 23:34:01,352 | INFO     | . log creation = 0 s
[2025-10-12 19:34:54] 2025-10-12 23:34:01,352 | INFO     | ..............................
[2025-10-12 19:34:54] 2025-10-12 23:34:01,438 | INFO     | 
[2025-10-12 19:34:54] 2025-10-12 23:34:01,438 | INFO     | job summary report
[2025-10-12 19:34:54] 2025-10-12 23:34:01,438 | INFO     | --------------------------------------------------
[2025-10-12 19:34:54] 2025-10-12 23:34:01,439 | INFO     | PanDA job id: 6840536232
[2025-10-12 19:34:54] 2025-10-12 23:34:01,439 | INFO     | task id: 46676269
[2025-10-12 19:34:54] 2025-10-12 23:34:01,439 | INFO     | errors: (none)
[2025-10-12 19:34:54] 2025-10-12 23:34:01,439 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:34:54] 2025-10-12 23:34:01,439 | INFO     | pilot state: finished 
[2025-10-12 19:34:54] 2025-10-12 23:34:01,439 | INFO     | transexitcode: 0
[2025-10-12 19:34:54] 2025-10-12 23:34:01,439 | INFO     | exeerrorcode: 0
[2025-10-12 19:34:54] 2025-10-12 23:34:01,440 | INFO     | exeerrordiag: 
[2025-10-12 19:34:54] 2025-10-12 23:34:01,440 | INFO     | exitcode: 0
[2025-10-12 19:34:54] 2025-10-12 23:34:01,440 | INFO     | exitmsg: OK
[2025-10-12 19:34:54] 2025-10-12 23:34:01,440 | INFO     | cpuconsumptiontime: 21071 s
[2025-10-12 19:34:54] 2025-10-12 23:34:01,440 | INFO     | nevents: 400
[2025-10-12 19:34:54] 2025-10-12 23:34:01,440 | INFO     | neventsw: 0
[2025-10-12 19:34:54] 2025-10-12 23:34:01,440 | INFO     | pid: 86907
[2025-10-12 19:34:54] 2025-10-12 23:34:01,440 | INFO     | pgrp: 86907
[2025-10-12 19:34:54] 2025-10-12 23:34:01,440 | INFO     | corecount: 11
[2025-10-12 19:34:54] 2025-10-12 23:34:01,441 | INFO     | event service: False
[2025-10-12 19:34:54] 2025-10-12 23:34:01,441 | INFO     | sizes: {0: 2348806, 3: 2349068, 11: 2349096, 2215: 2374248, 2216: 2374247, 2217: 2383485, 2222: 2383655}
[2025-10-12 19:34:54] 2025-10-12 23:34:01,441 | INFO     | --------------------------------------------------
[2025-10-12 19:34:54] 2025-10-12 23:34:01,441 | INFO     | 
[2025-10-12 19:34:54] 2025-10-12 23:34:01,441 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 19:34:54] 2025-10-12 23:34:01,459 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,460 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,460 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,460 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,460 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,460 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,460 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,460 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,461 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,461 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,461 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,461 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,461 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,461 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,461 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,461 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,462 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,462 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:34:54] 2025-10-12 23:34:01,462 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,462 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:34:54] 2025-10-12 23:34:01,462 | INFO     | job 6840536232 has completed (purged errors)
[2025-10-12 19:34:54] 2025-10-12 23:34:01,462 | INFO     | overall cleanup function is called
[2025-10-12 19:34:54] 2025-10-12 23:34:01,480 | INFO     | PID=80424 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 19:34:54] 2025-10-12 23:34:01,480 | INFO     | .. there are 5 such processes running
[2025-10-12 19:34:54] 2025-10-12 23:34:02,472 | INFO     | --- collectZombieJob: --- 10, [86907]
[2025-10-12 19:34:54] 2025-10-12 23:34:02,472 | INFO     | zombie collector waiting for pid 86907
[2025-10-12 19:34:54] 2025-10-12 23:34:02,472 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:34:54] 2025-10-12 23:34:02,472 | INFO     | collected zombie processes
[2025-10-12 19:34:54] 2025-10-12 23:34:02,472 | INFO     | will attempt to kill all subprocesses of pid=86907
[2025-10-12 19:34:54] 2025-10-12 23:34:02,649 | INFO     | process IDs to be killed: [86907] (in reverse order)
[2025-10-12 19:34:54] 2025-10-12 23:34:02,718 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:34:54] 2025-10-12 23:34:02,718 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:34:54] 2025-10-12 23:34:02,726 | INFO     | did not find any defunct processes belonging to 86907
[2025-10-12 19:34:54] 2025-10-12 23:34:02,732 | INFO     | did not find any defunct processes belonging to 86907
[2025-10-12 19:34:54] 2025-10-12 23:34:02,732 | INFO     | ready for new job
[2025-10-12 19:34:54] 2025-10-12 23:34:02,733 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:34:54] 2025-10-12 23:34:02,734 | INFO     | ***************************************
[2025-10-12 19:34:54] 2025-10-12 23:34:02,734 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:34:54] 2025-10-12 23:34:02,734 | INFO     | ***************************************
[2025-10-12 19:34:54] 2025-10-12 23:34:02,734 | INFO     | 
[2025-10-12 19:34:54] 2025-10-12 23:34:02,748 | INFO     | architecture information:
[2025-10-12 19:34:54] 2025-10-12 23:34:02,748 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:34:54] 2025-10-12 23:34:02,760 | INFO     | cat /etc/os-release:
[2025-10-12 19:34:54] NAME="CentOS Linux"
[2025-10-12 19:34:54] VERSION="7 (Core)"
[2025-10-12 19:34:54] ID="centos"
[2025-10-12 19:34:54] ID_LIKE="rhel fedora"
[2025-10-12 19:34:54] VERSION_ID="7"
[2025-10-12 19:34:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:34:54] ANSI_COLOR="0;31"
[2025-10-12 19:34:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:34:54] HOME_URL="https://www.centos.org/"
[2025-10-12 19:34:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:34:54] 
[2025-10-12 19:34:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:34:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:34:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:34:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:34:54] 
[2025-10-12 19:34:54] 2025-10-12 23:34:02,760 | INFO     | ***************************************
[2025-10-12 19:34:54] 2025-10-12 23:34:03,263 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 19:34:54] 2025-10-12 23:34:03,278 | INFO     | sufficient remaining disk space (83721453568 B)
[2025-10-12 19:34:54] 2025-10-12 23:34:03,278 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:34:54] 2025-10-12 23:34:03,278 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:34:54] 2025-10-12 23:34:03,278 | INFO     | update_server=False
[2025-10-12 19:34:54] 2025-10-12 23:34:03,278 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:34:54] 2025-10-12 23:34:03,278 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:34:54] 2025-10-12 23:34:03,278 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:34:54] 2025-10-12 23:34:03,279 | INFO     | aborting loop
[2025-10-12 19:34:54] 2025-10-12 23:34:03,297 | INFO     | all payload control threads have been joined
[2025-10-12 19:34:54] 2025-10-12 23:34:03,821 | INFO     | all job control threads have been joined
[2025-10-12 19:34:54] 2025-10-12 23:34:04,211 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:34:54] 2025-10-12 23:34:04,219 | INFO     | all data control threads have been joined
[2025-10-12 19:34:54] 2025-10-12 23:34:04,279 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:34:54] 2025-10-12 23:34:04,280 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:34:54] 2025-10-12 23:34:04,283 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:34:54] 2025-10-12 23:34:04,302 | INFO     | [payload] control thread has finished
[2025-10-12 19:34:54] 2025-10-12 23:34:04,396 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:34:54] 2025-10-12 23:34:04,609 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:34:54] 2025-10-12 23:34:04,746 | INFO     | [job] validate thread has finished
[2025-10-12 19:34:54] 2025-10-12 23:34:04,827 | INFO     | [job] control thread has finished
[2025-10-12 19:34:54] 2025-10-12 23:34:04,908 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:34:54] 2025-10-12 23:34:04,965 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:34:54] 2025-10-12 23:34:05,225 | INFO     | [data] control thread has finished
[2025-10-12 19:34:54] 2025-10-12 23:34:05,285 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:34:54] 2025-10-12 23:34:05,314 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:34:54] 2025-10-12 23:34:05,491 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:34:54] 2025-10-12 23:34:06,214 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:34:54] 2025-10-12 23:34:06,764 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:34:54] 2025-10-12 23:34:10,769 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:34:54] 2025-10-12 23:34:33,773 | INFO     | PID=80424 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 19:34:54] 2025-10-12 23:34:33,773 | INFO     | .. there are 5 such processes running
[2025-10-12 19:34:54] 2025-10-12 23:34:33,774 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:34:54] 2025-10-12 23:34:33,774 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:34:54] 2025-10-12 23:34:33,774 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:34:54] 2025-10-12 23:34:47,436 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:34:54] 2025-10-12 23:34:49,021 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140660505007936)>', '<ExcThread(monitor, started 140660027938560)>']
[2025-10-12 19:34:54] 2025-10-12 23:34:49,851 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:34:54] 2025-10-12 23:34:49,851 | INFO     | [monitor] control thread has ended
[2025-10-12 19:34:54] 2025-10-12 23:34:54,040 | INFO     | all workflow threads have been joined
[2025-10-12 19:34:54] 2025-10-12 23:34:54,042 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:34:54] 2025-10-12 23:34:54,043 | INFO     | traces error code: 0
[2025-10-12 19:34:54] 2025-10-12 23:34:54,043 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:34:54] 2025-10-12 23:34:54,140 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:34:54] 2025-10-12 23:34:54,142 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:34:54] 2025-10-12 23:34:54,144 [wrapper] pilotpid: 80424
[2025-10-12 19:34:54] 2025-10-12 23:34:54,147 [wrapper] Pilot exit status: 0
[2025-10-12 19:34:54] 2025-10-12 23:34:54,157 [wrapper] pandaids: 6840536232
[2025-10-12 19:34:54] 2025-10-12 23:34:54,205 [wrapper] cleanup supervisor_pilot  174722 80425
[2025-10-12 19:34:54] 2025-10-12 23:34:54,207 [wrapper] Test setup, not cleaning
[2025-10-12 19:34:54] 2025-10-12 23:34:54,209 [wrapper] apfmon messages muted
[2025-10-12 19:34:54] 2025-10-12 23:34:54,211 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:34:54] 2025-10-12 23:34:54,213 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:34:54]  *** Error codes and diagnostics ***
[2025-10-12 19:34:54]     "exeErrorCode": 0,
[2025-10-12 19:34:54]     "exeErrorDiag": "",
[2025-10-12 19:34:54]     "pilotErrorCode": 0,
[2025-10-12 19:34:54]     "pilotErrorDiag": "",
[2025-10-12 19:34:54]  *** Listing of results directory ***
[2025-10-12 19:34:54] total 416232
[2025-10-12 19:34:54] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 14:20 pilot3.tar.gz
[2025-10-12 19:34:54] -rwx------. 1 boincer umatlas     36292 Oct 12 14:33 runpilot2-wrapper.sh
[2025-10-12 19:34:54] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 14:33 queuedata.json
[2025-10-12 19:34:54] -rw-r--r--. 1 boincer umatlas       100 Oct 12 18:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:34:54] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 18:56 run_atlas
[2025-10-12 19:34:54] -rw-r--r--. 1 boincer umatlas       105 Oct 12 18:56 job.xml
[2025-10-12 19:34:54] -rw-r--r--. 2 boincer umatlas 221882788 Oct 12 18:56 EVNT.46676267._004411.pool.root.1
[2025-10-12 19:34:54] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 18:56 start_atlas.sh
[2025-10-12 19:34:54] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 18:56 shared
[2025-10-12 19:34:54] -rw-r--r--. 2 boincer umatlas    569677 Oct 12 18:56 input.tar.gz
[2025-10-12 19:34:54] -rw-r--r--. 1 boincer umatlas         0 Oct 12 18:56 boinc_lockfile
[2025-10-12 19:34:54] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 18:56 pandaJob.out
[2025-10-12 19:34:54] -rw-------. 1 boincer umatlas    975603 Oct 12 18:56 agis_schedconf.cvmfs.json
[2025-10-12 19:34:54] -rw-------. 1 boincer umatlas   1560580 Oct 12 18:56 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:34:54] drwx------. 5 boincer umatlas      4096 Oct 12 18:56 pilot3
[2025-10-12 19:34:54] -rw-r--r--. 1 boincer umatlas      6900 Oct 12 19:31 init_data.xml
[2025-10-12 19:34:54] -rw-------. 1 boincer umatlas 199032887 Oct 12 19:33 HITS.46676269._086287.pool.root.1
[2025-10-12 19:34:54] -rw-r--r--. 1 boincer umatlas       529 Oct 12 19:33 boinc_task_state.xml
[2025-10-12 19:34:54] -rw-------. 1 boincer umatlas      1023 Oct 12 19:33 memory_monitor_summary.json
[2025-10-12 19:34:54] -rw-------. 1 boincer umatlas    340121 Oct 12 19:33 log.46676269._086287.job.log.tgz.1
[2025-10-12 19:34:54] -rw-------. 1 boincer umatlas      7769 Oct 12 19:34 heartbeat.json
[2025-10-12 19:34:54] -rw-------. 1 boincer umatlas        95 Oct 12 19:34 pilot_heartbeat.json
[2025-10-12 19:34:54] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 19:34 boinc_mmap_file
[2025-10-12 19:34:54] -rw-r--r--. 1 boincer umatlas        27 Oct 12 19:34 wrapper_checkpoint.txt
[2025-10-12 19:34:54] -rw-------. 1 boincer umatlas      4821 Oct 12 19:34 pilotlog.txt
[2025-10-12 19:34:54] -rw-------. 1 boincer umatlas    358235 Oct 12 19:34 log.46676269._086287.job.log.1
[2025-10-12 19:34:54] -rw-------. 1 boincer umatlas       357 Oct 12 19:34 output.list
[2025-10-12 19:34:54] -rw-r--r--. 1 boincer umatlas       620 Oct 12 19:34 runtime_log
[2025-10-12 19:34:54] -rw-------. 1 boincer umatlas    716800 Oct 12 19:34 result.tar.gz
[2025-10-12 19:34:54] -rw-r--r--. 1 boincer umatlas      8705 Oct 12 19:34 runtime_log.err
[2025-10-12 19:34:54] -rw-------. 1 boincer umatlas       650 Oct 12 19:34 nCKKDmO4FS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmBhUMDmUmWNIn.diag
[2025-10-12 19:34:54] -rw-r--r--. 1 boincer umatlas     21845 Oct 12 19:34 stderr.txt
[2025-10-12 19:34:54] HITS file was successfully produced:
[2025-10-12 19:34:54] -rw-------. 1 boincer umatlas 199032887 Oct 12 19:33 shared/HITS.pool.root.1
[2025-10-12 19:34:54]  *** Contents of shared directory: ***
[2025-10-12 19:34:54] total 412340
[2025-10-12 19:34:54] -rw-r--r--. 2 boincer umatlas 221882788 Oct 12 18:56 ATLAS.root_0
[2025-10-12 19:34:54] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 18:56 start_atlas.sh
[2025-10-12 19:34:54] -rw-r--r--. 2 boincer umatlas    569677 Oct 12 18:56 input.tar.gz
[2025-10-12 19:34:54] -rw-------. 1 boincer umatlas 199032887 Oct 12 19:33 HITS.pool.root.1
[2025-10-12 19:34:54] -rw-------. 1 boincer umatlas    716800 Oct 12 19:34 result.tar.gz
19:34:55 (76719): run_atlas exited; CPU time 21082.879700
19:34:55 (76719): called boinc_finish(0)

</stderr_txt>
]]>

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