Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:54:37 (562355): wrapper (7.7.26015): starting
18:54:37 (562355): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 18:54:37] Arguments: --nthreads 8
[2025-10-12 18:54:37] Threads: 8
[2025-10-12 18:54:37] Checking for CVMFS
[2025-10-12 18:54:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:54:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:54:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:54:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:54:39] 2.13.2.0 67158 129869 295056 151640 3 326 19990852 32935937 34509 16776704 0 288884246 99.652 262067829 20765 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 18:54:39] CVMFS is ok
[2025-10-12 18:54:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:54:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:54:39] Further information can be found at the LHC@home message board.
[2025-10-12 18:54:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:54:39] Checking for apptainer binary...
[2025-10-12 18:54:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:54:39] Running /usr/bin/apptainer --version
[2025-10-12 18:54:39] apptainer version 1.4.3-1.el9
[2025-10-12 18:54:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:54:40] c6-8-25-1.aglt2.org
[2025-10-12 18:54:40] apptainer works
[2025-10-12 18:54:40] Set ATHENA_PROC_NUMBER=8
[2025-10-12 18:54:40] Set ATHENA_CORE_NUMBER=8
[2025-10-12 18:54:40] Starting ATLAS job with PandaID=6840223488
[2025-10-12 18:54:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:20:06 (562355): BOINC client no longer exists - exiting
20:20:06 (562355): timer handler: client dead, exiting
20:29:47 (980520): wrapper (7.7.26015): starting
20:29:47 (980520): wrapper: running run_atlas (--nthreads 10)
[2025-10-12 20:29:47] Arguments: --nthreads 10
[2025-10-12 20:29:47] Threads: 10
[2025-10-12 20:29:47] This job has been restarted, cleaning up previous attempt
[2025-10-12 20:29:47] Checking for CVMFS
[2025-10-12 20:29:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:29:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:29:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:29:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:29:48] 2.13.2.0 67158 129964 291956 151642 0 257 21109337 32935936 30119 16776704 0 289226666 99.652 262101814 20766 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 20:29:48] CVMFS is ok
[2025-10-12 20:29:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:29:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:29:48] Further information can be found at the LHC@home message board.
[2025-10-12 20:29:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:29:48] Checking for apptainer binary...
[2025-10-12 20:29:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:29:48] Running /usr/bin/apptainer --version
[2025-10-12 20:29:48] apptainer version 1.4.3-1.el9
[2025-10-12 20:29:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:29:48] c6-8-25-1.aglt2.org
[2025-10-12 20:29:48] apptainer works
[2025-10-12 20:29:48] Set ATHENA_PROC_NUMBER=10
[2025-10-12 20:29:48] Set ATHENA_CORE_NUMBER=10
[2025-10-12 20:29:48] Starting ATLAS job with PandaID=6840223488
[2025-10-12 20:29:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:47:03]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:47:03] 2025-10-13 07:46:25,785 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 03:47:03] 2025-10-13 07:46:25,785 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 03:47:03] 2025-10-13 07:46:25,837 | INFO     | fitting pss+swap vs Time
[2025-10-13 03:47:03] 2025-10-13 07:46:25,838 | INFO     | sum of square deviations: 24311390767.261623
[2025-10-13 03:47:03] 2025-10-13 07:46:25,842 | INFO     | sum of deviations: 70475225362.18204
[2025-10-13 03:47:03] 2025-10-13 07:46:25,843 | INFO     | mean x: 1760328462.593458
[2025-10-13 03:47:03] 2025-10-13 07:46:25,843 | INFO     | mean y: 2191048.707943925
[2025-10-13 03:47:03] 2025-10-13 07:46:25,843 | INFO     | -- intersect: -5100747993.339759
[2025-10-13 03:47:03] 2025-10-13 07:46:25,843 | INFO     | intersect: -5100747993.339759
[2025-10-13 03:47:03] 2025-10-13 07:46:25,844 | INFO     | chi2: 4.370241503259081
[2025-10-13 03:47:03] 2025-10-13 07:46:25,845 | INFO     | sum of square deviations: 23469284852.21733
[2025-10-13 03:47:03] 2025-10-13 07:46:25,850 | INFO     | sum of deviations: 146296542906.00012
[2025-10-13 03:47:03] 2025-10-13 07:46:25,850 | INFO     | mean x: 1760328310.0945625
[2025-10-13 03:47:03] 2025-10-13 07:46:25,850 | INFO     | mean y: 2204723.0
[2025-10-13 03:47:03] 2025-10-13 07:46:25,850 | INFO     | -- intersect: -10970858485.701263
[2025-10-13 03:47:03] 2025-10-13 07:46:25,850 | INFO     | intersect: -10970858485.701263
[2025-10-13 03:47:03] 2025-10-13 07:46:25,851 | INFO     | chi2: 2.136849237967333
[2025-10-13 03:47:03] 2025-10-13 07:46:25,851 | INFO     | current chi2=2.136849237967333 (change=51.10455025485911 %)
[2025-10-13 03:47:03] 2025-10-13 07:46:25,852 | INFO     | sum of square deviations: 22646827798.86123
[2025-10-13 03:47:03] 2025-10-13 07:46:25,875 | INFO     | sum of deviations: 148357842162.55975
[2025-10-13 03:47:03] 2025-10-13 07:46:25,875 | INFO     | mean x: 1760328157.5933015
[2025-10-13 03:47:03] 2025-10-13 07:46:25,876 | INFO     | mean y: 2205102.985645933
[2025-10-13 03:47:03] 2025-10-13 07:46:25,876 | INFO     | -- intersect: -11529585983.961582
[2025-10-13 03:47:03] 2025-10-13 07:46:25,876 | INFO     | intersect: -11529585983.961582
[2025-10-13 03:47:03] 2025-10-13 07:46:25,876 | INFO     | chi2: 2.126853458918093
[2025-10-13 03:47:03] 2025-10-13 07:46:25,877 | INFO     | current chi2=2.126853458918093 (change=0.46778120195080486 %)
[2025-10-13 03:47:03] 2025-10-13 07:46:25,877 | INFO     | right removable region: 417
[2025-10-13 03:47:03] 2025-10-13 07:46:25,877 | INFO     | sum of square deviations: 23469260452.21733
[2025-10-13 03:47:03] 2025-10-13 07:46:25,938 | INFO     | sum of deviations: -6292733950.033089
[2025-10-13 03:47:03] 2025-10-13 07:46:25,938 | INFO     | mean x: 1760328615.0945625
[2025-10-13 03:47:03] 2025-10-13 07:46:25,938 | INFO     | mean y: 2204907.550827423
[2025-10-13 03:47:03] 2025-10-13 07:46:25,938 | INFO     | -- intersect: 474195904.5391336
[2025-10-13 03:47:03] 2025-10-13 07:46:25,938 | INFO     | intersect: 474195904.5391336
[2025-10-13 03:47:03] 2025-10-13 07:46:25,939 | INFO     | chi2: 2.592126001892214
[2025-10-13 03:47:03] 2025-10-13 07:46:25,939 | INFO     | current chi2=2.592126001892214 (change=40.68689339115122 %)
[2025-10-13 03:47:03] 2025-10-13 07:46:25,940 | INFO     | sum of square deviations: 22646804924.672203
[2025-10-13 03:47:03] 2025-10-13 07:46:25,962 | INFO     | time since job start (26183s) is within the limit (172800.0s)
[2025-10-13 03:47:03] 2025-10-13 07:46:25,965 | INFO     | sum of deviations: -25931303504.76076
[2025-10-13 03:47:03] 2025-10-13 07:46:25,966 | INFO     | mean x: 1760328767.5956938
[2025-10-13 03:47:03] 2025-10-13 07:46:25,982 | INFO     | mean y: 2208531.2440191386
[2025-10-13 03:47:03] 2025-10-13 07:46:25,982 | INFO     | -- intersect: 2017840303.254177
[2025-10-13 03:47:03] 2025-10-13 07:46:25,982 | INFO     | intersect: 2017840303.254177
[2025-10-13 03:47:03] 2025-10-13 07:46:25,983 | INFO     | chi2: 2.4492951993168077
[2025-10-13 03:47:03] 2025-10-13 07:46:25,984 | INFO     | current chi2=2.4492951993168077 (change=5.510179770240403 %)
[2025-10-13 03:47:03] 2025-10-13 07:46:25,984 | INFO     | left removable region: 20
[2025-10-13 03:47:03] 2025-10-13 07:46:25,984 | INFO     | sum of square deviations: 19402120831.16876
[2025-10-13 03:47:03] 2025-10-13 07:46:26,011 | INFO     | sum of deviations: 44544492585.2041
[2025-10-13 03:47:03] 2025-10-13 07:46:26,011 | INFO     | mean x: 1760328737.0982368
[2025-10-13 03:47:03] 2025-10-13 07:46:26,011 | INFO     | mean y: 2224793.1486146096
[2025-10-13 03:47:03] 2025-10-13 07:46:26,011 | INFO     | -- intersect: -4039238047.925271
[2025-10-13 03:47:03] 2025-10-13 07:46:26,011 | INFO     | intersect: -4039238047.925271
[2025-10-13 03:47:03] 2025-10-13 07:46:26,034 | INFO     | chi2: 0.16825464557342415
[2025-10-13 03:47:03] 2025-10-13 07:46:26,034 | INFO     | -- intersect: -4039238047.925271
[2025-10-13 03:47:03] 2025-10-13 07:46:26,035 | INFO     | current memory leak: 2.30 B/s (using 397 data points, chi2=0.17)
[2025-10-13 03:47:03] 2025-10-13 07:46:26,036 | INFO     | could have reported an average CPU frequency of 2563 MHz (18 samples)
[2025-10-13 03:47:03] 2025-10-13 07:46:26,036 | INFO     | ..............................
[2025-10-13 03:47:03] 2025-10-13 07:46:26,036 | INFO     | . Timing measurements:
[2025-10-13 03:47:03] 2025-10-13 07:46:26,036 | INFO     | . get job = 0 s
[2025-10-13 03:47:03] 2025-10-13 07:46:26,036 | INFO     | . initial setup = 1 s
[2025-10-13 03:47:03] 2025-10-13 07:46:26,036 | INFO     | . payload setup = 8 s
[2025-10-13 03:47:03] 2025-10-13 07:46:26,036 | INFO     | . stage-in = 0 s
[2025-10-13 03:47:03] 2025-10-13 07:46:26,036 | INFO     | . payload execution = 26100 s
[2025-10-13 03:47:03] 2025-10-13 07:46:26,036 | INFO     | . stage-out = 6 s
[2025-10-13 03:47:03] 2025-10-13 07:46:26,036 | INFO     | . log creation = 0 s
[2025-10-13 03:47:03] 2025-10-13 07:46:26,037 | INFO     | ..............................
[2025-10-13 03:47:03] 2025-10-13 07:46:26,293 | INFO     | 
[2025-10-13 03:47:03] 2025-10-13 07:46:26,293 | INFO     | job summary report
[2025-10-13 03:47:03] 2025-10-13 07:46:26,293 | INFO     | --------------------------------------------------
[2025-10-13 03:47:03] 2025-10-13 07:46:26,294 | INFO     | PanDA job id: 6840223488
[2025-10-13 03:47:03] 2025-10-13 07:46:26,294 | INFO     | task id: 46676269
[2025-10-13 03:47:03] 2025-10-13 07:46:26,294 | INFO     | errors: (none)
[2025-10-13 03:47:03] 2025-10-13 07:46:26,294 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 03:47:03] 2025-10-13 07:46:26,294 | INFO     | pilot state: finished 
[2025-10-13 03:47:03] 2025-10-13 07:46:26,294 | INFO     | transexitcode: 0
[2025-10-13 03:47:03] 2025-10-13 07:46:26,294 | INFO     | exeerrorcode: 0
[2025-10-13 03:47:03] 2025-10-13 07:46:26,294 | INFO     | exeerrordiag: 
[2025-10-13 03:47:03] 2025-10-13 07:46:26,294 | INFO     | exitcode: 0
[2025-10-13 03:47:03] 2025-10-13 07:46:26,294 | INFO     | exitmsg: OK
[2025-10-13 03:47:03] 2025-10-13 07:46:26,294 | INFO     | cpuconsumptiontime: 48005 s
[2025-10-13 03:47:03] 2025-10-13 07:46:26,294 | INFO     | nevents: 400
[2025-10-13 03:47:03] 2025-10-13 07:46:26,295 | INFO     | neventsw: 0
[2025-10-13 03:47:03] 2025-10-13 07:46:26,295 | INFO     | pid: 1041727
[2025-10-13 03:47:03] 2025-10-13 07:46:26,295 | INFO     | pgrp: 1041727
[2025-10-13 03:47:03] 2025-10-13 07:46:26,295 | INFO     | corecount: 10
[2025-10-13 03:47:03] 2025-10-13 07:46:26,295 | INFO     | event service: False
[2025-10-13 03:47:03] 2025-10-13 07:46:26,295 | INFO     | sizes: {0: 2348857, 1: 2348857, 6: 2349147, 12: 2349175, 26114: 2385367, 26115: 2385366, 26122: 2394548, 26126: 2394604, 26165: 2394798}
[2025-10-13 03:47:03] 2025-10-13 07:46:26,295 | INFO     | --------------------------------------------------
[2025-10-13 03:47:03] 2025-10-13 07:46:26,295 | INFO     | 
[2025-10-13 03:47:03] 2025-10-13 07:46:26,295 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 03:47:03] 2025-10-13 07:46:26,555 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,555 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,555 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,556 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,556 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,556 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,556 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,556 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,556 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,556 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,556 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,556 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,556 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,557 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,557 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,557 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,557 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,557 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 03:47:03] 2025-10-13 07:46:26,557 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,557 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 03:47:03] 2025-10-13 07:46:26,557 | INFO     | job 6840223488 has completed (purged errors)
[2025-10-13 03:47:03] 2025-10-13 07:46:26,587 | INFO     | overall cleanup function is called
[2025-10-13 03:47:03] 2025-10-13 07:46:27,602 | INFO     | --- collectZombieJob: --- 10, [1041727]
[2025-10-13 03:47:03] 2025-10-13 07:46:27,602 | INFO     | zombie collector waiting for pid 1041727
[2025-10-13 03:47:03] 2025-10-13 07:46:27,603 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 03:47:03] 2025-10-13 07:46:27,603 | INFO     | collected zombie processes
[2025-10-13 03:47:03] 2025-10-13 07:46:27,603 | INFO     | will attempt to kill all subprocesses of pid=1041727
[2025-10-13 03:47:03] 2025-10-13 07:46:31,388 | INFO     | process IDs to be killed: [1041727] (in reverse order)
[2025-10-13 03:47:03] 2025-10-13 07:46:31,571 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:47:03] 2025-10-13 07:46:31,571 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:47:03] 2025-10-13 07:46:31,601 | INFO     | did not find any defunct processes belonging to 1041727
[2025-10-13 03:47:03] 2025-10-13 07:46:31,628 | INFO     | did not find any defunct processes belonging to 1041727
[2025-10-13 03:47:03] 2025-10-13 07:46:31,629 | INFO     | ready for new job
[2025-10-13 03:47:03] 2025-10-13 07:46:31,629 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:47:03] 2025-10-13 07:46:31,632 | INFO     | ***************************************
[2025-10-13 03:47:03] 2025-10-13 07:46:31,633 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:47:03] 2025-10-13 07:46:31,633 | INFO     | ***************************************
[2025-10-13 03:47:03] 2025-10-13 07:46:31,633 | INFO     | 
[2025-10-13 03:47:03] 2025-10-13 07:46:31,682 | INFO     | architecture information:
[2025-10-13 03:47:03] 2025-10-13 07:46:31,708 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:47:03] 2025-10-13 07:46:31,868 | INFO     | cat /etc/os-release:
[2025-10-13 03:47:03] NAME="CentOS Linux"
[2025-10-13 03:47:03] VERSION="7 (Core)"
[2025-10-13 03:47:03] ID="centos"
[2025-10-13 03:47:03] ID_LIKE="rhel fedora"
[2025-10-13 03:47:03] VERSION_ID="7"
[2025-10-13 03:47:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:47:03] ANSI_COLOR="0;31"
[2025-10-13 03:47:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:47:03] HOME_URL="https://www.centos.org/"
[2025-10-13 03:47:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:47:03] 
[2025-10-13 03:47:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:47:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:47:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:47:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:47:03] 
[2025-10-13 03:47:03] 2025-10-13 07:46:31,869 | INFO     | ***************************************
[2025-10-13 03:47:03] 2025-10-13 07:46:32,372 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 03:47:03] 2025-10-13 07:46:32,426 | INFO     | sufficient remaining disk space (72215429120 B)
[2025-10-13 03:47:03] 2025-10-13 07:46:32,427 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:47:03] 2025-10-13 07:46:32,427 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:47:03] 2025-10-13 07:46:32,427 | INFO     | update_server=False
[2025-10-13 03:47:03] 2025-10-13 07:46:32,427 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:47:03] 2025-10-13 07:46:32,428 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:47:03] 2025-10-13 07:46:32,476 | INFO     | all payload control threads have been joined
[2025-10-13 03:47:03] 2025-10-13 07:46:32,713 | INFO     | all job control threads have been joined
[2025-10-13 03:47:03] 2025-10-13 07:46:33,197 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:47:03] 2025-10-13 07:46:33,197 | INFO     | aborting loop
[2025-10-13 03:47:03] 2025-10-13 07:46:33,433 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:47:03] 2025-10-13 07:46:33,482 | INFO     | [payload] control thread has finished
[2025-10-13 03:47:03] 2025-10-13 07:46:33,506 | INFO     | all data control threads have been joined
[2025-10-13 03:47:03] 2025-10-13 07:46:33,539 | INFO     | [job] validate thread has finished
[2025-10-13 03:47:03] 2025-10-13 07:46:33,719 | INFO     | [job] control thread has finished
[2025-10-13 03:47:03] 2025-10-13 07:46:33,958 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:47:03] 2025-10-13 07:46:34,005 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:47:03] 2025-10-13 07:46:34,203 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:47:03] 2025-10-13 07:46:34,261 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:47:03] 2025-10-13 07:46:34,435 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:47:03] 2025-10-13 07:46:34,449 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:47:03] 2025-10-13 07:46:34,530 | INFO     | [data] control thread has finished
[2025-10-13 03:47:03] 2025-10-13 07:46:34,857 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:47:03] 2025-10-13 07:46:34,881 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:47:03] 2025-10-13 07:46:34,882 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:47:03] 2025-10-13 07:46:34,883 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:47:03] 2025-10-13 07:46:35,363 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:47:03] 2025-10-13 07:46:36,371 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:47:03] 2025-10-13 07:46:38,014 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:47:03] 2025-10-13 07:46:48,589 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:47:03] 2025-10-13 07:46:49,496 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139647509059392)>', '<ExcThread(monitor, started 139646877026048)>']
[2025-10-13 03:47:03] 2025-10-13 07:46:54,522 | INFO     | all workflow threads have been joined
[2025-10-13 03:47:03] 2025-10-13 07:46:54,522 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:47:03] 2025-10-13 07:46:54,522 | INFO     | traces error code: 0
[2025-10-13 03:47:03] 2025-10-13 07:46:54,523 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:47:03] 2025-10-13 07:47:01,748 | INFO     | PID=1001893 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 03:47:03] 2025-10-13 07:47:01,748 | INFO     | .. there are 43 such processes running
[2025-10-13 03:47:03] 2025-10-13 07:47:01,749 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:47:03] 2025-10-13 07:47:01,750 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:47:03] 2025-10-13 07:47:01,750 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:47:03] 2025-10-13 07:47:01,750 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:47:03] 2025-10-13 07:47:01,750 | INFO     | [monitor] control thread has ended
[2025-10-13 03:47:03] 2025-10-13 07:47:02,156 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:47:03] 2025-10-13 07:47:02,159 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:47:03] 2025-10-13 07:47:02,179 [wrapper] pilotpid: 1001893
[2025-10-13 03:47:03] 2025-10-13 07:47:02,227 [wrapper] Pilot exit status: 0
[2025-10-13 03:47:03] 2025-10-13 07:47:02,375 [wrapper] pandaids: 6840223488 6840223488
[2025-10-13 03:47:03] 2025-10-13 07:47:03,152 [wrapper] cleanup supervisor_pilot 2991388 1001894
[2025-10-13 03:47:03] 2025-10-13 07:47:03,156 [wrapper] Test setup, not cleaning
[2025-10-13 03:47:03] 2025-10-13 07:47:03,177 [wrapper] apfmon messages muted
[2025-10-13 03:47:03] 2025-10-13 07:47:03,195 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:47:03] 2025-10-13 07:47:03,198 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:47:04]  *** Error codes and diagnostics ***
[2025-10-13 03:47:04]     "exeErrorCode": 0,
[2025-10-13 03:47:04]     "exeErrorDiag": "",
[2025-10-13 03:47:04]     "pilotErrorCode": 0,
[2025-10-13 03:47:04]     "pilotErrorDiag": "",
[2025-10-13 03:47:04]  *** Listing of results directory ***
[2025-10-13 03:47:04] total 622984
[2025-10-13 03:47:04] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-13 03:47:04] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 11:00 pilot3.tar.gz
[2025-10-13 03:47:04] -rwx------. 1 boincer umatlas     36292 Oct 12 11:05 runpilot2-wrapper.sh
[2025-10-13 03:47:04] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 11:05 queuedata.json
[2025-10-13 03:47:04] -rw-r--r--. 1 boincer umatlas       100 Oct 12 18:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:47:04] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 18:54 run_atlas
[2025-10-13 03:47:04] -rw-r--r--. 1 boincer umatlas       105 Oct 12 18:54 job.xml
[2025-10-13 03:47:04] -rw-r--r--. 3 boincer umatlas 218766848 Oct 12 18:54 EVNT.46676267._004546.pool.root.1
[2025-10-13 03:47:04] -rw-r--r--. 3 boincer umatlas 218766848 Oct 12 18:54 ATLAS.root_0
[2025-10-13 03:47:04] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 18:54 start_atlas.sh
[2025-10-13 03:47:04] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 18:54 shared
[2025-10-13 03:47:04] -rw-r--r--. 2 boincer umatlas    569680 Oct 12 18:54 input.tar.gz
[2025-10-13 03:47:04] -rw-r--r--. 1 boincer umatlas         0 Oct 12 18:54 boinc_lockfile
[2025-10-13 03:47:04] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 20:29 pandaJob.out
[2025-10-13 03:47:04] -rw-------. 1 boincer umatlas    975603 Oct 12 20:30 agis_schedconf.cvmfs.json
[2025-10-13 03:47:04] -rw-------. 1 boincer umatlas 188584769 Oct 13 03:42 HITS.46676269._081597.pool.root.1
[2025-10-13 03:47:04] -rw-r--r--. 1 boincer umatlas       530 Oct 13 03:42 boinc_task_state.xml
[2025-10-13 03:47:04] -rw-r--r--. 1 boincer umatlas      6856 Oct 13 03:45 init_data.xml
[2025-10-13 03:47:04] -rw-------. 1 boincer umatlas      1053 Oct 13 03:45 memory_monitor_summary.json
[2025-10-13 03:47:04] -rw-------. 1 boincer umatlas   1560580 Oct 13 03:45 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:47:04] -rw-------. 1 boincer umatlas    641900 Oct 13 03:45 log.46676269._081597.job.log.tgz.1
[2025-10-13 03:47:04] -rw-------. 1 boincer umatlas      7840 Oct 13 03:46 heartbeat.json
[2025-10-13 03:47:04] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 03:46 boinc_mmap_file
[2025-10-13 03:47:04] -rw-r--r--. 1 boincer umatlas        28 Oct 13 03:46 wrapper_checkpoint.txt
[2025-10-13 03:47:04] -rw-------. 1 boincer umatlas        96 Oct 13 03:47 pilot_heartbeat.json
[2025-10-13 03:47:04] -rw-------. 1 boincer umatlas       823 Oct 13 03:47 pilotlog.txt
[2025-10-13 03:47:04] -rw-------. 1 boincer umatlas   3314798 Oct 13 03:47 log.46676269._081597.job.log.1
[2025-10-13 03:47:04] -rw-------. 1 boincer umatlas       357 Oct 13 03:47 output.list
[2025-10-13 03:47:04] -rw-r--r--. 1 boincer umatlas       620 Oct 13 03:47 runtime_log
[2025-10-13 03:47:04] -rw-------. 1 boincer umatlas   3973120 Oct 13 03:47 result.tar.gz
[2025-10-13 03:47:04] -rw-------. 1 boincer umatlas       786 Oct 13 03:47 Yq2NDmSoCS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmTCUMDmWU2nHm.diag
[2025-10-13 03:47:04] -rw-r--r--. 1 boincer umatlas      8796 Oct 13 03:47 runtime_log.err
[2025-10-13 03:47:04] -rw-r--r--. 1 boincer umatlas     23295 Oct 13 03:47 stderr.txt
[2025-10-13 03:47:04] HITS file was successfully produced:
[2025-10-13 03:47:04] -rw-------. 1 boincer umatlas 188584769 Oct 13 03:42 shared/HITS.pool.root.1
[2025-10-13 03:47:04]  *** Contents of shared directory: ***
[2025-10-13 03:47:04] total 402272
[2025-10-13 03:47:04] -rw-r--r--. 3 boincer umatlas 218766848 Oct 12 18:54 ATLAS.root_0
[2025-10-13 03:47:04] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 18:54 start_atlas.sh
[2025-10-13 03:47:04] -rw-r--r--. 2 boincer umatlas    569680 Oct 12 18:54 input.tar.gz
[2025-10-13 03:47:04] -rw-------. 1 boincer umatlas 188584769 Oct 13 03:42 HITS.pool.root.1
[2025-10-13 03:47:04] -rw-------. 1 boincer umatlas   3973120 Oct 13 03:47 result.tar.gz
03:47:05 (980520): run_atlas exited; CPU time 49589.068469
03:47:05 (980520): called boinc_finish(0)

</stderr_txt>
]]>

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