Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:27:13 (2794162): wrapper (7.7.26015): starting
09:27:13 (2794162): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 09:27:13] Arguments: --nthreads 3
[2025-10-13 09:27:13] Threads: 3
[2025-10-13 09:27:13] Checking for CVMFS
[2025-10-13 09:27:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 09:27:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 09:27:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 09:27:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 09:27:14] 2.9.2.0 1632445 3952 83820 151653 0 56 28969448 36864000 0 130560 0 3027151 99.991 145170 811 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 09:27:14] CVMFS is ok
[2025-10-13 09:27:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 09:27:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 09:27:14] Further information can be found at the LHC@home message board.
[2025-10-13 09:27:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 09:27:14] Checking for apptainer binary...
[2025-10-13 09:27:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 09:27:14] Running /usr/bin/apptainer --version
[2025-10-13 09:27:14] apptainer version 1.4.1-1.1
[2025-10-13 09:27:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 09:27:14] atlasA223b
[2025-10-13 09:27:14] apptainer works
[2025-10-13 09:27:14] Set ATHENA_PROC_NUMBER=3
[2025-10-13 09:27:14] Set ATHENA_CORE_NUMBER=3
[2025-10-13 09:27:14] Starting ATLAS job with PandaID=6840428673
[2025-10-13 09:27:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 10:49:32]  *** The last 200 lines of the pilot log: ***
[2025-10-13 10:49:32] 2025-10-13 08:48:53,977 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 10:49:32] 2025-10-13 08:48:53,977 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 10:49:32] 2025-10-13 08:48:53,977 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 10:49:32] 2025-10-13 08:48:53,977 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 10:49:32] 2025-10-13 08:48:53,977 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 10:49:32] 2025-10-13 08:48:53,977 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 10:49:32] 2025-10-13 08:48:53,977 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 10:49:32] 2025-10-13 08:48:53,977 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 10:49:32] 2025-10-13 08:48:53,977 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 10:49:32] 2025-10-13 08:48:53,977 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 10:49:32] 2025-10-13 08:48:53,977 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 10:49:32] 2025-10-13 08:48:53,977 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 10:49:32] 2025-10-13 08:48:53,978 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 10:49:32] 2025-10-13 08:48:53,978 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 10:49:32] 2025-10-13 08:48:53,978 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 10:49:32] 2025-10-13 08:48:53,978 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 10:49:32] 2025-10-13 08:48:53,978 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 10:49:32] 2025-10-13 08:48:53,978 | INFO     | job 6840428673 has completed (purged errors)
[2025-10-13 10:49:32] 2025-10-13 08:48:53,978 | INFO     | overall cleanup function is called
[2025-10-13 10:49:32] 2025-10-13 08:48:54,023 | INFO     | number of running child processes to parent process 2804330: 1
[2025-10-13 10:49:32] 2025-10-13 08:48:54,024 | INFO     | maximum number of monitored processes: 6
[2025-10-13 10:49:32] 2025-10-13 08:48:54,024 | INFO     | aborting job monitoring since job object (job id=6840428673) has expired
[2025-10-13 10:49:32] 2025-10-13 08:48:54,985 | INFO     | --- collectZombieJob: --- 10, [2804330]
[2025-10-13 10:49:32] 2025-10-13 08:48:54,986 | INFO     | zombie collector waiting for pid 2804330
[2025-10-13 10:49:32] 2025-10-13 08:48:54,986 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 10:49:32] 2025-10-13 08:48:54,986 | INFO     | collected zombie processes
[2025-10-13 10:49:32] 2025-10-13 08:48:54,986 | INFO     | will attempt to kill all subprocesses of pid=2804330
[2025-10-13 10:49:32] 2025-10-13 08:48:55,038 | INFO     | process IDs to be killed: [2804330] (in reverse order)
[2025-10-13 10:49:32] 2025-10-13 08:48:55,068 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 10:49:32] 2025-10-13 08:48:55,068 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 10:49:32] 2025-10-13 08:48:55,070 | INFO     | did not find any defunct processes belonging to 2804330
[2025-10-13 10:49:32] 2025-10-13 08:48:55,071 | INFO     | did not find any defunct processes belonging to 2804330
[2025-10-13 10:49:32] 2025-10-13 08:48:55,071 | INFO     | ready for new job
[2025-10-13 10:49:32] 2025-10-13 08:48:55,071 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 10:49:32] 2025-10-13 08:48:55,072 | INFO     | ***************************************
[2025-10-13 10:49:32] 2025-10-13 08:48:55,072 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 10:49:32] 2025-10-13 08:48:55,072 | INFO     | ***************************************
[2025-10-13 10:49:32] 2025-10-13 08:48:55,072 | INFO     | 
[2025-10-13 10:49:32] 2025-10-13 08:48:55,072 | INFO     | architecture information:
[2025-10-13 10:49:32] 2025-10-13 08:48:55,072 | INFO     | executing command: cat /etc/os-release
[2025-10-13 10:49:32] 2025-10-13 08:48:55,083 | INFO     | cat /etc/os-release:
[2025-10-13 10:49:32] NAME="CentOS Linux"
[2025-10-13 10:49:32] VERSION="7 (Core)"
[2025-10-13 10:49:32] ID="centos"
[2025-10-13 10:49:32] ID_LIKE="rhel fedora"
[2025-10-13 10:49:32] VERSION_ID="7"
[2025-10-13 10:49:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 10:49:32] ANSI_COLOR="0;31"
[2025-10-13 10:49:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 10:49:32] HOME_URL="https://www.centos.org/"
[2025-10-13 10:49:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 10:49:32] 
[2025-10-13 10:49:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 10:49:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 10:49:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 10:49:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 10:49:32] 
[2025-10-13 10:49:32] 2025-10-13 08:48:55,083 | INFO     | ***************************************
[2025-10-13 10:49:32] 2025-10-13 08:48:55,586 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 10:49:32] 2025-10-13 08:48:55,600 | INFO     | sufficient remaining disk space (375932321792 B)
[2025-10-13 10:49:32] 2025-10-13 08:48:55,600 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 10:49:32] 2025-10-13 08:48:55,601 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 10:49:32] 2025-10-13 08:48:55,601 | INFO     | update_server=False
[2025-10-13 10:49:32] 2025-10-13 08:48:55,601 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 10:49:32] 2025-10-13 08:48:55,601 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:49:32] 2025-10-13 08:48:55,601 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:49:32] 2025-10-13 08:48:55,601 | INFO     | aborting loop
[2025-10-13 10:49:32] 2025-10-13 08:48:55,601 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 10:49:32] 2025-10-13 08:48:55,690 | INFO     | all job control threads have been joined
[2025-10-13 10:49:32] 2025-10-13 08:48:55,863 | INFO     | all payload control threads have been joined
[2025-10-13 10:49:32] 2025-10-13 08:48:56,500 | INFO     | all data control threads have been joined
[2025-10-13 10:49:32] 2025-10-13 08:48:56,607 | INFO     | [job] job monitor thread has finished
[2025-10-13 10:49:32] 2025-10-13 08:48:56,607 | INFO     | [job] retrieve thread has finished
[2025-10-13 10:49:32] 2025-10-13 08:48:56,607 | INFO     | [job] queue monitor thread has finished
[2025-10-13 10:49:32] 2025-10-13 08:48:56,696 | INFO     | [job] control thread has finished
[2025-10-13 10:49:32] 2025-10-13 08:48:56,859 | INFO     | [data] copytool_in thread has finished
[2025-10-13 10:49:32] 2025-10-13 08:48:56,868 | INFO     | [payload] control thread has finished
[2025-10-13 10:49:32] 2025-10-13 08:48:56,940 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 10:49:32] 2025-10-13 08:48:57,075 | INFO     | [job] validate thread has finished
[2025-10-13 10:49:32] 2025-10-13 08:48:57,240 | INFO     | [payload] failed_post thread has finished
[2025-10-13 10:49:32] 2025-10-13 08:48:57,348 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 10:49:32] 2025-10-13 08:48:57,506 | INFO     | [data] control thread has finished
[2025-10-13 10:49:32] 2025-10-13 08:48:57,581 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 10:49:32] 2025-10-13 08:48:57,601 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 10:49:32] 2025-10-13 08:48:57,607 | INFO     | [data] copytool_out thread has finished
[2025-10-13 10:49:32] 2025-10-13 08:48:58,077 | INFO     | [payload] validate_post thread has finished
[2025-10-13 10:49:32] 2025-10-13 08:48:58,729 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 10:49:32] 2025-10-13 08:49:02,732 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 10:49:32] 2025-10-13 08:49:26,072 | INFO     | PID=2797889 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 10:49:32] 2025-10-13 08:49:26,072 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 10:49:32] 2025-10-13 08:49:26,072 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 10:49:32] 2025-10-13 08:49:26,072 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 10:49:32] 2025-10-13 08:49:26,120 | INFO     | [monitor] cgroup control has ended
[2025-10-13 10:49:32] 2025-10-13 08:49:27,732 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140413665990464)>', '<ExcThread(monitor, started 140412949886720)>']
[2025-10-13 10:49:32] 2025-10-13 08:49:28,083 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 10:49:32] 2025-10-13 08:49:28,083 | INFO     | [monitor] control thread has ended
[2025-10-13 10:49:32] 2025-10-13 08:49:32,738 | INFO     | all workflow threads have been joined
[2025-10-13 10:49:32] 2025-10-13 08:49:32,738 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 10:49:32] 2025-10-13 08:49:32,738 | INFO     | traces error code: 0
[2025-10-13 10:49:32] 2025-10-13 08:49:32,738 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 10:49:32] 2025-10-13 08:49:32,790 [wrapper] ==== pilot stdout END ====
[2025-10-13 10:49:32] 2025-10-13 08:49:32,792 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 10:49:32] 2025-10-13 08:49:32,795 [wrapper] pilotpid: 2797889
[2025-10-13 10:49:32] 2025-10-13 08:49:32,798 [wrapper] Pilot exit status: 0
[2025-10-13 10:49:32] 2025-10-13 08:49:32,805 [wrapper] pandaids: 6840428673
[2025-10-13 10:49:32] 2025-10-13 08:49:32,825 [wrapper] cleanup supervisor_pilot 2816247 2797890
[2025-10-13 10:49:32] 2025-10-13 08:49:32,828 [wrapper] Test setup, not cleaning
[2025-10-13 10:49:32] 2025-10-13 08:49:32,830 [wrapper] apfmon messages muted
[2025-10-13 10:49:32] 2025-10-13 08:49:32,833 [wrapper] ==== wrapper stdout END ====
[2025-10-13 10:49:32] 2025-10-13 08:49:32,836 [wrapper] ==== wrapper stderr END ====
[2025-10-13 10:49:32]  *** Error codes and diagnostics ***
[2025-10-13 10:49:32]     "exeErrorCode": 0,
[2025-10-13 10:49:32]     "exeErrorDiag": "",
[2025-10-13 10:49:32]     "pilotErrorCode": 0,
[2025-10-13 10:49:32]     "pilotErrorDiag": "",
[2025-10-13 10:49:32]  *** Listing of results directory ***
[2025-10-13 10:49:32] total 409836
[2025-10-13 10:49:32] -rw-r--r-- 1 boinc boinc    557409 Oct 12 18:49 pilot3.tar.gz
[2025-10-13 10:49:32] -rwx------ 1 boinc boinc     36292 Oct 12 19:02 runpilot2-wrapper.sh
[2025-10-13 10:49:32] -rw-r--r-- 1 boinc boinc      5112 Oct 12 19:02 queuedata.json
[2025-10-13 10:49:32] -rw-r--r-- 1 boinc boinc       100 Oct 13 09:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 10:49:32] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 09:27 run_atlas
[2025-10-13 10:49:32] -rw-r--r-- 1 boinc boinc       105 Oct 13 09:27 job.xml
[2025-10-13 10:49:32] -rw-r--r-- 2 boinc boinc 222112685 Oct 13 09:27 EVNT.46676267._004795.pool.root.1
[2025-10-13 10:49:32] -rw-r--r-- 2 boinc boinc    569680 Oct 13 09:27 input.tar.gz
[2025-10-13 10:49:32] -rw-r--r-- 2 boinc boinc     15120 Oct 13 09:27 start_atlas.sh
[2025-10-13 10:49:32] drwxrwx--x 2 boinc boinc      4096 Oct 13 09:27 shared
[2025-10-13 10:49:32] -rw-r--r-- 1 boinc boinc         0 Oct 13 09:27 boinc_setup_complete
[2025-10-13 10:49:32] -rw-r--r-- 1 boinc boinc      6449 Oct 13 09:27 init_data.xml
[2025-10-13 10:49:32] -rw-r--r-- 1 boinc boinc         0 Oct 13 09:27 boinc_lockfile
[2025-10-13 10:49:32] -rw-r--r-- 1 boinc boinc      2549 Oct 13 09:27 pandaJob.out
[2025-10-13 10:49:32] -rw------- 1 boinc boinc    972849 Oct 13 09:27 agis_schedconf.cvmfs.json
[2025-10-13 10:49:32] -rw------- 1 boinc boinc   1560580 Oct 13 09:27 agis_ddmendpoints.agis.ALL.json
[2025-10-13 10:49:32] drwx------ 5 boinc boinc      4096 Oct 13 09:27 pilot3
[2025-10-13 10:49:32] -rw-r--r-- 1 boinc boinc       530 Oct 13 10:48 boinc_task_state.xml
[2025-10-13 10:49:32] -rw------- 1 boinc boinc 191695805 Oct 13 10:48 HITS.46676269._084275.pool.root.1
[2025-10-13 10:49:32] -rw------- 1 boinc boinc      1017 Oct 13 10:48 memory_monitor_summary.json
[2025-10-13 10:49:32] -rw------- 1 boinc boinc    266842 Oct 13 10:48 log.46676269._084275.job.log.tgz.1
[2025-10-13 10:49:32] -rw------- 1 boinc boinc        95 Oct 13 10:48 pilot_heartbeat.json
[2025-10-13 10:49:32] -rw------- 1 boinc boinc      7774 Oct 13 10:48 heartbeat.json
[2025-10-13 10:49:32] -rw-r--r-- 1 boinc boinc        27 Oct 13 10:49 wrapper_checkpoint.txt
[2025-10-13 10:49:32] -rw-r--r-- 1 boinc boinc      8192 Oct 13 10:49 boinc_mmap_file
[2025-10-13 10:49:32] -rw------- 1 boinc boinc      4752 Oct 13 10:49 pilotlog.txt
[2025-10-13 10:49:32] -rw------- 1 boinc boinc    719270 Oct 13 10:49 log.46676269._084275.job.log.1
[2025-10-13 10:49:32] -rw------- 1 boinc boinc       357 Oct 13 10:49 output.list
[2025-10-13 10:49:32] -rw-r--r-- 1 boinc boinc       620 Oct 13 10:49 runtime_log
[2025-10-13 10:49:32] -rw------- 1 boinc boinc   1003520 Oct 13 10:49 result.tar.gz
[2025-10-13 10:49:32] -rw-r--r-- 1 boinc boinc      8797 Oct 13 10:49 runtime_log.err
[2025-10-13 10:49:32] -rw------- 1 boinc boinc       662 Oct 13 10:49 NEeKDmIeES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTlkNDmmBr7ym.diag
[2025-10-13 10:49:32] -rw-r--r-- 1 boinc boinc     12905 Oct 13 10:49 stderr.txt
[2025-10-13 10:49:32] HITS file was successfully produced:
[2025-10-13 10:49:32] -rw------- 1 boinc boinc 191695805 Oct 13 10:48 shared/HITS.pool.root.1
[2025-10-13 10:49:32]  *** Contents of shared directory: ***
[2025-10-13 10:49:32] total 405676
[2025-10-13 10:49:32] -rw-r--r-- 2 boinc boinc 222112685 Oct 13 09:27 ATLAS.root_0
[2025-10-13 10:49:32] -rw-r--r-- 2 boinc boinc    569680 Oct 13 09:27 input.tar.gz
[2025-10-13 10:49:32] -rw-r--r-- 2 boinc boinc     15120 Oct 13 09:27 start_atlas.sh
[2025-10-13 10:49:32] -rw------- 1 boinc boinc 191695805 Oct 13 10:48 HITS.pool.root.1
[2025-10-13 10:49:32] -rw------- 1 boinc boinc   1003520 Oct 13 10:49 result.tar.gz
10:49:34 (2794162): run_atlas exited; CPU time 13987.372584
10:49:34 (2794162): called boinc_finish(0)

</stderr_txt>
]]>

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