Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:51:21 (164189): wrapper (7.7.26015): starting
18:51:21 (164189): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 18:51:21] Arguments: --nthreads 9
[2025-10-12 18:51:21] Threads: 9
[2025-10-12 18:51:21] Checking for CVMFS
[2025-10-12 18:51:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:51:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:51:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:51:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:51:21] 2.13.2.0 3269412 36350 390372 151640 1 762 38081867 40960000 31237 16776704 0 468344362 99.848 185472325 36762 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 18:51:21] CVMFS is ok
[2025-10-12 18:51:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:51:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:51:21] Further information can be found at the LHC@home message board.
[2025-10-12 18:51:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:51:21] Checking for apptainer binary...
[2025-10-12 18:51:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:51:21] Running /usr/bin/apptainer --version
[2025-10-12 18:51:21] apptainer version 1.4.3-1.el9
[2025-10-12 18:51:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:51:21] c8-16-2.aglt2.org
[2025-10-12 18:51:21] apptainer works
[2025-10-12 18:51:21] Set ATHENA_PROC_NUMBER=9
[2025-10-12 18:51:21] Set ATHENA_CORE_NUMBER=9
[2025-10-12 18:51:21] Starting ATLAS job with PandaID=6829510532
[2025-10-12 18:51:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:39:00]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:39:00] 2025-10-12 23:38:08,661 | INFO     | time since job start (2786s) is within the limit (172800.0s)
[2025-10-12 19:39:00] 2025-10-12 23:38:09,354 | INFO     | monitor loop #193: job 0:6829510532 is in state 'finished'
[2025-10-12 19:39:00] 2025-10-12 23:38:09,355 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:39:00] 2025-10-12 23:38:09,707 | INFO     | job 6829510532 has state=finished
[2025-10-12 19:39:00] 2025-10-12 23:38:09,707 | INFO     | preparing for final server update for job 6829510532 in state='finished'
[2025-10-12 19:39:00] 2025-10-12 23:38:09,707 | INFO     | this job has now completed (state=finished)
[2025-10-12 19:39:00] 2025-10-12 23:38:09,708 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 19:39:00] 2025-10-12 23:38:09,708 | INFO     | log transfer has been attempted: DONE
[2025-10-12 19:39:00] 2025-10-12 23:38:09,708 | INFO     | job 6829510532 has finished - writing final server update
[2025-10-12 19:39:00] 2025-10-12 23:38:09,708 | INFO     | total number of processed events: 400 (read)
[2025-10-12 19:39:00] 2025-10-12 23:38:09,708 | INFO     | executing command: lscpu
[2025-10-12 19:39:00] 2025-10-12 23:38:09,834 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 19:39:00] 2025-10-12 23:38:10,668 | INFO     | time since job start (2788s) is within the limit (172800.0s)
[2025-10-12 19:39:00] 2025-10-12 23:38:11,859 | INFO     | monitor loop #194: job 0:6829510532 is in state 'finished'
[2025-10-12 19:39:00] 2025-10-12 23:38:11,859 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:39:00] 2025-10-12 23:38:12,676 | INFO     | time since job start (2790s) is within the limit (172800.0s)
[2025-10-12 19:39:00] 2025-10-12 23:38:14,369 | INFO     | monitor loop #195: job 0:6829510532 is in state 'finished'
[2025-10-12 19:39:00] 2025-10-12 23:38:14,369 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:39:00] 2025-10-12 23:38:14,682 | INFO     | time since job start (2792s) is within the limit (172800.0s)
[2025-10-12 19:39:00] 2025-10-12 23:38:16,701 | INFO     | time since job start (2794s) is within the limit (172800.0s)
[2025-10-12 19:39:00] 2025-10-12 23:38:16,874 | INFO     | monitor loop #196: job 0:6829510532 is in state 'finished'
[2025-10-12 19:39:00] 2025-10-12 23:38:16,874 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:39:00] 2025-10-12 23:38:18,710 | INFO     | time since job start (2796s) is within the limit (172800.0s)
[2025-10-12 19:39:00] 2025-10-12 23:38:19,379 | INFO     | monitor loop #197: job 0:6829510532 is in state 'finished'
[2025-10-12 19:39:00] 2025-10-12 23:38:19,379 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:39:00] 2025-10-12 23:38:20,719 | INFO     | time since job start (2798s) is within the limit (172800.0s)
[2025-10-12 19:39:00] 2025-10-12 23:38:21,884 | INFO     | monitor loop #198: job 0:6829510532 is in state 'finished'
[2025-10-12 19:39:00] 2025-10-12 23:38:21,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:39:00] 2025-10-12 23:38:22,726 | INFO     | time since job start (2800s) is within the limit (172800.0s)
[2025-10-12 19:39:00] 2025-10-12 23:38:24,392 | INFO     | monitor loop #199: job 0:6829510532 is in state 'finished'
[2025-10-12 19:39:00] 2025-10-12 23:38:24,392 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:39:00] 2025-10-12 23:38:24,732 | INFO     | time since job start (2802s) is within the limit (172800.0s)
[2025-10-12 19:39:00] 2025-10-12 23:38:26,563 | INFO     | PID=179709 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 19:39:00] 2025-10-12 23:38:26,564 | INFO     | .. there are 40 such processes running
[2025-10-12 19:39:00] 2025-10-12 23:38:26,804 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 19:39:00] 2025-10-12 23:38:26,809 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3795.6929218749983
[2025-10-12 19:39:00] 2025-10-12 23:38:26,823 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6829510532/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:39:00] 2025-10-12 23:38:26,823 | INFO     | extracted standard info from prmon json
[2025-10-12 19:39:00] 2025-10-12 23:38:26,823 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 19:39:00] 2025-10-12 23:38:26,823 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:39:00] 2025-10-12 23:38:26,824 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:39:00] 2025-10-12 23:38:26,824 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:39:00] 2025-10-12 23:38:26,825 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:39:00] 2025-10-12 23:38:26,825 | INFO     | sum of square deviations: 18381740.0
[2025-10-12 19:39:00] 2025-10-12 23:38:26,825 | INFO     | sum of deviations: -77945799.99999999
[2025-10-12 19:39:00] 2025-10-12 23:38:26,825 | INFO     | mean x: 1760310996.0
[2025-10-12 19:39:00] 2025-10-12 23:38:26,825 | INFO     | mean y: 2229577.794871795
[2025-10-12 19:39:00] 2025-10-12 23:38:26,825 | INFO     | -- intersect: 7466639847.552619
[2025-10-12 19:39:00] 2025-10-12 23:38:26,825 | INFO     | intersect: 7466639847.552619
[2025-10-12 19:39:00] 2025-10-12 23:38:26,825 | INFO     | chi2: 0.0054798164879834455
[2025-10-12 19:39:00] 2025-10-12 23:38:26,825 | INFO     | -- intersect: 7466639847.552619
[2025-10-12 19:39:00] 2025-10-12 23:38:26,825 | INFO     | current memory leak: -4.24 B/s (using 39 data points, chi2=0.01)
[2025-10-12 19:39:00] 2025-10-12 23:38:26,825 | INFO     | could have reported an average CPU frequency of 3782 MHz (5 samples)
[2025-10-12 19:39:00] 2025-10-12 23:38:26,825 | INFO     | ..............................
[2025-10-12 19:39:00] 2025-10-12 23:38:26,826 | INFO     | . Timing measurements:
[2025-10-12 19:39:00] 2025-10-12 23:38:26,826 | INFO     | . get job = 0 s
[2025-10-12 19:39:00] 2025-10-12 23:38:26,826 | INFO     | . initial setup = 2 s
[2025-10-12 19:39:00] 2025-10-12 23:38:26,826 | INFO     | . payload setup = 6 s
[2025-10-12 19:39:00] 2025-10-12 23:38:26,826 | INFO     | . stage-in = 0 s
[2025-10-12 19:39:00] 2025-10-12 23:38:26,826 | INFO     | . payload execution = 2756 s
[2025-10-12 19:39:00] 2025-10-12 23:38:26,826 | INFO     | . stage-out = 0 s
[2025-10-12 19:39:00] 2025-10-12 23:38:26,826 | INFO     | . log creation = 0 s
[2025-10-12 19:39:00] 2025-10-12 23:38:26,826 | INFO     | ..............................
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | 
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | job summary report
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | --------------------------------------------------
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | PanDA job id: 6829510532
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | task id: 46376905
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | errors: (none)
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | pilot state: finished 
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | transexitcode: 0
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | exeerrorcode: 0
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | exeerrordiag: 
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | exitcode: 0
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | exitmsg: OK
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | cpuconsumptiontime: 19669 s
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | nevents: 400
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | neventsw: 0
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | pid: 198947
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | pgrp: 198947
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | corecount: 9
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | event service: False
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | sizes: {0: 2348810, 6: 2349072, 11: 2349100, 2766: 2374585, 2768: 2383639, 2786: 2383809}
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | --------------------------------------------------
[2025-10-12 19:39:00] 2025-10-12 23:38:26,928 | INFO     | 
[2025-10-12 19:39:00] 2025-10-12 23:38:26,929 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-12 19:39:00] 2025-10-12 23:38:26,949 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,949 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,949 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,949 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,949 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,949 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,949 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,949 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,949 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,949 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,949 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,950 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,950 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,950 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,950 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,950 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,950 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,950 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:39:00] 2025-10-12 23:38:26,950 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,950 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:39:00] 2025-10-12 23:38:26,950 | INFO     | job 6829510532 has completed (purged errors)
[2025-10-12 19:39:00] 2025-10-12 23:38:26,950 | INFO     | overall cleanup function is called
[2025-10-12 19:39:00] 2025-10-12 23:38:27,961 | INFO     | --- collectZombieJob: --- 10, [198947]
[2025-10-12 19:39:00] 2025-10-12 23:38:27,961 | INFO     | zombie collector waiting for pid 198947
[2025-10-12 19:39:00] 2025-10-12 23:38:27,961 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:39:00] 2025-10-12 23:38:27,961 | INFO     | collected zombie processes
[2025-10-12 19:39:00] 2025-10-12 23:38:27,961 | INFO     | will attempt to kill all subprocesses of pid=198947
[2025-10-12 19:39:00] 2025-10-12 23:38:28,834 | INFO     | process IDs to be killed: [198947] (in reverse order)
[2025-10-12 19:39:00] 2025-10-12 23:38:29,051 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:39:00] 2025-10-12 23:38:29,052 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:39:00] 2025-10-12 23:38:29,084 | INFO     | did not find any defunct processes belonging to 198947
[2025-10-12 19:39:00] 2025-10-12 23:38:29,121 | INFO     | did not find any defunct processes belonging to 198947
[2025-10-12 19:39:00] 2025-10-12 23:38:29,122 | INFO     | ready for new job
[2025-10-12 19:39:00] 2025-10-12 23:38:29,122 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:39:00] 2025-10-12 23:38:29,124 | INFO     | ***************************************
[2025-10-12 19:39:00] 2025-10-12 23:38:29,124 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-12 19:39:00] 2025-10-12 23:38:29,124 | INFO     | ***************************************
[2025-10-12 19:39:00] 2025-10-12 23:38:29,124 | INFO     | 
[2025-10-12 19:39:00] 2025-10-12 23:38:29,155 | INFO     | architecture information:
[2025-10-12 19:39:00] 2025-10-12 23:38:29,159 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:39:00] 2025-10-12 23:38:29,216 | INFO     | cat /etc/os-release:
[2025-10-12 19:39:00] NAME="CentOS Linux"
[2025-10-12 19:39:00] VERSION="7 (Core)"
[2025-10-12 19:39:00] ID="centos"
[2025-10-12 19:39:00] ID_LIKE="rhel fedora"
[2025-10-12 19:39:00] VERSION_ID="7"
[2025-10-12 19:39:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:39:00] ANSI_COLOR="0;31"
[2025-10-12 19:39:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:39:00] HOME_URL="https://www.centos.org/"
[2025-10-12 19:39:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:39:00] 
[2025-10-12 19:39:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:39:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:39:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:39:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:39:00] 
[2025-10-12 19:39:00] 2025-10-12 23:38:29,216 | INFO     | ***************************************
[2025-10-12 19:39:00] 2025-10-12 23:38:29,720 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-12 19:39:00] 2025-10-12 23:38:29,759 | INFO     | sufficient remaining disk space (165813420032 B)
[2025-10-12 19:39:00] 2025-10-12 23:38:29,759 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:39:00] 2025-10-12 23:38:29,759 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:39:00] 2025-10-12 23:38:29,760 | INFO     | update_server=False
[2025-10-12 19:39:00] 2025-10-12 23:38:29,760 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:39:00] 2025-10-12 23:38:29,761 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:39:00] 2025-10-12 23:38:30,169 | INFO     | all data control threads have been joined
[2025-10-12 19:39:00] 2025-10-12 23:38:30,417 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:39:00] 2025-10-12 23:38:30,418 | INFO     | aborting loop
[2025-10-12 19:39:00] 2025-10-12 23:38:30,436 | INFO     | all payload control threads have been joined
[2025-10-12 19:39:00] 2025-10-12 23:38:30,497 | INFO     | all job control threads have been joined
[2025-10-12 19:39:00] 2025-10-12 23:38:30,765 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:39:00] 2025-10-12 23:38:30,873 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:39:00] 2025-10-12 23:38:31,179 | INFO     | [data] control thread has finished
[2025-10-12 19:39:00] 2025-10-12 23:38:31,184 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:39:00] 2025-10-12 23:38:31,422 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:39:00] 2025-10-12 23:38:31,422 | INFO     | [job] validate thread has finished
[2025-10-12 19:39:00] 2025-10-12 23:38:31,422 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:39:00] 2025-10-12 23:38:31,442 | INFO     | [payload] control thread has finished
[2025-10-12 19:39:00] 2025-10-12 23:38:31,502 | INFO     | [job] control thread has finished
[2025-10-12 19:39:00] 2025-10-12 23:38:31,698 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:39:00] 2025-10-12 23:38:31,768 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:39:00] 2025-10-12 23:38:31,920 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:39:00] 2025-10-12 23:38:31,939 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:39:00] 2025-10-12 23:38:31,972 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:39:00] 2025-10-12 23:38:32,715 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:39:00] 2025-10-12 23:38:32,944 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:39:00] 2025-10-12 23:38:36,724 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:39:00] 2025-10-12 23:38:40,448 | INFO     | job.realtimelogging is not enabled
[2025-10-12 19:39:00] 2025-10-12 23:38:41,455 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:39:00] 2025-10-12 23:38:46,783 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:39:00] 2025-10-12 23:38:48,132 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139948305332032)>', '<ExcThread(monitor, started 139947633776384)>']
[2025-10-12 19:39:00] 2025-10-12 23:38:53,157 | INFO     | all workflow threads have been joined
[2025-10-12 19:39:00] 2025-10-12 23:38:53,157 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:39:00] 2025-10-12 23:38:53,158 | INFO     | traces error code: 0
[2025-10-12 19:39:00] 2025-10-12 23:38:53,158 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:39:00] 2025-10-12 23:38:57,630 | INFO     | 2807s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 19:39:00] 2025-10-12 23:38:59,657 | INFO     | PID=179709 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 19:39:00] 2025-10-12 23:38:59,657 | INFO     | .. there are 40 such processes running
[2025-10-12 19:39:00] 2025-10-12 23:38:59,657 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:39:00] 2025-10-12 23:38:59,657 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:39:00] 2025-10-12 23:38:59,657 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:39:00] 2025-10-12 23:38:59,658 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:39:00] 2025-10-12 23:38:59,658 | INFO     | [monitor] control thread has ended
[2025-10-12 19:39:00] 2025-10-12 23:38:59,969 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:39:00] 2025-10-12 23:38:59,972 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:39:00] 2025-10-12 23:38:59,990 [wrapper] pilotpid: 179709
[2025-10-12 19:39:00] 2025-10-12 23:39:00,004 [wrapper] Pilot exit status: 0
[2025-10-12 19:39:00] 2025-10-12 23:39:00,072 [wrapper] pandaids: 6829510532
[2025-10-12 19:39:00] 2025-10-12 23:39:00,337 [wrapper] cleanup supervisor_pilot  702058 179710
[2025-10-12 19:39:00] 2025-10-12 23:39:00,362 [wrapper] Test setup, not cleaning
[2025-10-12 19:39:00] 2025-10-12 23:39:00,381 [wrapper] apfmon messages muted
[2025-10-12 19:39:00] 2025-10-12 23:39:00,396 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:39:00] 2025-10-12 23:39:00,411 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:39:00]  *** Error codes and diagnostics ***
[2025-10-12 19:39:00]     "exeErrorCode": 0,
[2025-10-12 19:39:00]     "exeErrorDiag": "",
[2025-10-12 19:39:00]     "pilotErrorCode": 0,
[2025-10-12 19:39:00]     "pilotErrorDiag": "",
[2025-10-12 19:39:00]  *** Listing of results directory ***
[2025-10-12 19:39:00] total 392892
[2025-10-12 19:39:00] -rw-r--r--. 1 boincer umatlas    552446 Oct  4 04:30 pilot3.tar.gz
[2025-10-12 19:39:00] -rwx------. 1 boincer umatlas     36292 Oct  4 04:57 runpilot2-wrapper.sh
[2025-10-12 19:39:00] -rw-r--r--. 1 boincer umatlas      5112 Oct  4 04:57 queuedata.json
[2025-10-12 19:39:00] -rw-r--r--. 1 boincer umatlas       100 Oct 12 18:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:39:00] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 18:51 run_atlas
[2025-10-12 19:39:00] -rw-r--r--. 1 boincer umatlas       105 Oct 12 18:51 job.xml
[2025-10-12 19:39:00] -rw-r--r--. 2 boincer umatlas 217487172 Oct 12 18:51 EVNT.46376901._002001.pool.root.1
[2025-10-12 19:39:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 18:51 start_atlas.sh
[2025-10-12 19:39:00] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 18:51 shared
[2025-10-12 19:39:00] -rw-r--r--. 2 boincer umatlas    565594 Oct 12 18:51 input.tar.gz
[2025-10-12 19:39:00] -rw-r--r--. 1 boincer umatlas         0 Oct 12 18:51 boinc_lockfile
[2025-10-12 19:39:00] -rw-r--r--. 1 boincer umatlas      2516 Oct 12 18:51 pandaJob.out
[2025-10-12 19:39:00] -rw-------. 1 boincer umatlas    975603 Oct 12 18:51 agis_schedconf.cvmfs.json
[2025-10-12 19:39:00] -rw-------. 1 boincer umatlas   1560580 Oct 12 18:51 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:39:00] drwx------. 4 boincer umatlas      4096 Oct 12 18:51 pilot3
[2025-10-12 19:39:00] -rw-r--r--. 1 boincer umatlas      7161 Oct 12 19:31 init_data.xml
[2025-10-12 19:39:00] -rw-------. 1 boincer umatlas 179511900 Oct 12 19:37 HITS.46376905._056002.pool.root.1
[2025-10-12 19:39:00] -rw-r--r--. 1 boincer umatlas       529 Oct 12 19:37 boinc_task_state.xml
[2025-10-12 19:39:00] -rw-------. 1 boincer umatlas      1047 Oct 12 19:38 memory_monitor_summary.json
[2025-10-12 19:39:00] -rw-------. 1 boincer umatlas    297458 Oct 12 19:38 log.46376905._056002.job.log.tgz.1
[2025-10-12 19:39:00] -rw-------. 1 boincer umatlas        95 Oct 12 19:38 pilot_heartbeat.json
[2025-10-12 19:39:00] -rw-------. 1 boincer umatlas      7767 Oct 12 19:38 heartbeat.json
[2025-10-12 19:39:00] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 19:38 boinc_mmap_file
[2025-10-12 19:39:00] -rw-r--r--. 1 boincer umatlas        27 Oct 12 19:38 wrapper_checkpoint.txt
[2025-10-12 19:39:00] -rw-------. 1 boincer umatlas       937 Oct 12 19:38 pilotlog.txt
[2025-10-12 19:39:00] -rw-------. 1 boincer umatlas    421284 Oct 12 19:39 log.46376905._056002.job.log.1
[2025-10-12 19:39:00] -rw-------. 1 boincer umatlas       357 Oct 12 19:39 output.list
[2025-10-12 19:39:00] -rw-r--r--. 1 boincer umatlas       620 Oct 12 19:39 runtime_log
[2025-10-12 19:39:00] -rw-------. 1 boincer umatlas    737280 Oct 12 19:39 result.tar.gz
[2025-10-12 19:39:00] -rw-r--r--. 1 boincer umatlas      8698 Oct 12 19:39 runtime_log.err
[2025-10-12 19:39:00] -rw-------. 1 boincer umatlas       651 Oct 12 19:39 BxkMDmcGDP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4mKNDmo29lRm.diag
[2025-10-12 19:39:00] -rw-r--r--. 1 boincer umatlas     22217 Oct 12 19:39 stderr.txt
[2025-10-12 19:39:00] HITS file was successfully produced:
[2025-10-12 19:39:00] -rw-------. 1 boincer umatlas 179511900 Oct 12 19:37 shared/HITS.pool.root.1
[2025-10-12 19:39:00]  *** Contents of shared directory: ***
[2025-10-12 19:39:00] total 388996
[2025-10-12 19:39:00] -rw-r--r--. 2 boincer umatlas 217487172 Oct 12 18:51 ATLAS.root_0
[2025-10-12 19:39:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 18:51 start_atlas.sh
[2025-10-12 19:39:00] -rw-r--r--. 2 boincer umatlas    565594 Oct 12 18:51 input.tar.gz
[2025-10-12 19:39:00] -rw-------. 1 boincer umatlas 179511900 Oct 12 19:37 HITS.pool.root.1
[2025-10-12 19:39:00] -rw-------. 1 boincer umatlas    737280 Oct 12 19:39 result.tar.gz
19:39:02 (164189): run_atlas exited; CPU time 19769.943773
19:39:02 (164189): called boinc_finish(0)

</stderr_txt>
]]>

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