Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:58:09 (3466680): wrapper (7.7.26015): starting
09:58:09 (3466680): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 09:58:09] Arguments: --nthreads 3
[2025-10-13 09:58:09] Threads: 3
[2025-10-13 09:58:09] Checking for CVMFS
[2025-10-13 09:58:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 09:58:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 09:58:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 09:58:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 09:58:09] 2.9.2.0 1793182 5447 85148 151653 3 56 28684328 36864001 0 130560 0 4397711 99.991 186584 678 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 09:58:09] CVMFS is ok
[2025-10-13 09:58:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 09:58:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 09:58:09] Further information can be found at the LHC@home message board.
[2025-10-13 09:58:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 09:58:09] Checking for apptainer binary...
[2025-10-13 09:58:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 09:58:09] Running /usr/bin/apptainer --version
[2025-10-13 09:58:09] apptainer version 1.4.1-1.1
[2025-10-13 09:58:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 09:58:09] magicA252
[2025-10-13 09:58:09] apptainer works
[2025-10-13 09:58:09] Set ATHENA_PROC_NUMBER=3
[2025-10-13 09:58:09] Set ATHENA_CORE_NUMBER=3
[2025-10-13 09:58:09] Starting ATLAS job with PandaID=6840536934
[2025-10-13 09:58:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 11:17:29]  *** The last 200 lines of the pilot log: ***
[2025-10-13 11:17:29] 2025-10-13 09:16:58,704 | INFO     | --- collectZombieJob: --- 10, [3476837]
[2025-10-13 11:17:29] 2025-10-13 09:16:58,704 | INFO     | zombie collector waiting for pid 3476837
[2025-10-13 11:17:29] 2025-10-13 09:16:58,704 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 11:17:29] 2025-10-13 09:16:58,704 | INFO     | collected zombie processes
[2025-10-13 11:17:29] 2025-10-13 09:16:58,704 | INFO     | will attempt to kill all subprocesses of pid=3476837
[2025-10-13 11:17:29] 2025-10-13 09:16:58,746 | INFO     | process IDs to be killed: [3476837] (in reverse order)
[2025-10-13 11:17:29] 2025-10-13 09:16:58,772 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 11:17:29] 2025-10-13 09:16:58,772 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 11:17:29] 2025-10-13 09:16:58,773 | INFO     | did not find any defunct processes belonging to 3476837
[2025-10-13 11:17:29] 2025-10-13 09:16:58,774 | INFO     | did not find any defunct processes belonging to 3476837
[2025-10-13 11:17:29] 2025-10-13 09:16:58,775 | INFO     | ready for new job
[2025-10-13 11:17:29] 2025-10-13 09:16:58,775 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 11:17:29] 2025-10-13 09:16:58,775 | INFO     | ***************************************
[2025-10-13 11:17:29] 2025-10-13 09:16:58,775 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 11:17:29] 2025-10-13 09:16:58,775 | INFO     | ***************************************
[2025-10-13 11:17:29] 2025-10-13 09:16:58,775 | INFO     | 
[2025-10-13 11:17:29] 2025-10-13 09:16:58,776 | INFO     | architecture information:
[2025-10-13 11:17:29] 2025-10-13 09:16:58,776 | INFO     | executing command: cat /etc/os-release
[2025-10-13 11:17:29] 2025-10-13 09:16:58,785 | INFO     | cat /etc/os-release:
[2025-10-13 11:17:29] NAME="CentOS Linux"
[2025-10-13 11:17:29] VERSION="7 (Core)"
[2025-10-13 11:17:29] ID="centos"
[2025-10-13 11:17:29] ID_LIKE="rhel fedora"
[2025-10-13 11:17:29] VERSION_ID="7"
[2025-10-13 11:17:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 11:17:29] ANSI_COLOR="0;31"
[2025-10-13 11:17:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 11:17:29] HOME_URL="https://www.centos.org/"
[2025-10-13 11:17:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 11:17:29] 
[2025-10-13 11:17:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 11:17:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 11:17:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 11:17:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 11:17:29] 
[2025-10-13 11:17:29] 2025-10-13 09:16:58,785 | INFO     | ***************************************
[2025-10-13 11:17:29] 2025-10-13 09:16:59,288 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 11:17:29] 2025-10-13 09:16:59,300 | INFO     | sufficient remaining disk space (376013062144 B)
[2025-10-13 11:17:29] 2025-10-13 09:16:59,300 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 11:17:29] 2025-10-13 09:16:59,301 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 11:17:29] 2025-10-13 09:16:59,301 | INFO     | update_server=False
[2025-10-13 11:17:29] 2025-10-13 09:16:59,301 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 11:17:29] 2025-10-13 09:16:59,301 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:17:29] 2025-10-13 09:16:59,301 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 11:17:29] 2025-10-13 09:16:59,301 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:17:29] 2025-10-13 09:16:59,301 | INFO     | aborting loop
[2025-10-13 11:17:29] 2025-10-13 09:17:00,179 | INFO     | all job control threads have been joined
[2025-10-13 11:17:29] 2025-10-13 09:17:00,303 | INFO     | [job] queue monitor thread has finished
[2025-10-13 11:17:29] 2025-10-13 09:17:00,306 | INFO     | [job] retrieve thread has finished
[2025-10-13 11:17:29] 2025-10-13 09:17:00,307 | INFO     | [job] job monitor thread has finished
[2025-10-13 11:17:29] 2025-10-13 09:17:00,309 | INFO     | all data control threads have been joined
[2025-10-13 11:17:29] 2025-10-13 09:17:00,554 | INFO     | [payload] validate_post thread has finished
[2025-10-13 11:17:29] 2025-10-13 09:17:00,613 | INFO     | all payload control threads have been joined
[2025-10-13 11:17:29] 2025-10-13 09:17:00,724 | INFO     | [payload] failed_post thread has finished
[2025-10-13 11:17:29] 2025-10-13 09:17:00,745 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 11:17:29] 2025-10-13 09:17:00,767 | INFO     | [data] copytool_in thread has finished
[2025-10-13 11:17:29] 2025-10-13 09:17:01,052 | INFO     | [job] validate thread has finished
[2025-10-13 11:17:29] 2025-10-13 09:17:01,116 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 11:17:29] 2025-10-13 09:17:01,184 | INFO     | [job] control thread has finished
[2025-10-13 11:17:29] 2025-10-13 09:17:01,207 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 11:17:29] 2025-10-13 09:17:01,314 | INFO     | [data] control thread has finished
[2025-10-13 11:17:29] 2025-10-13 09:17:01,425 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 11:17:29] 2025-10-13 09:17:01,619 | INFO     | [payload] control thread has finished
[2025-10-13 11:17:29] 2025-10-13 09:17:02,751 | INFO     | [data] copytool_out thread has finished
[2025-10-13 11:17:29] 2025-10-13 09:17:03,308 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 11:17:29] 2025-10-13 09:17:09,593 | INFO     | job.realtimelogging is not enabled
[2025-10-13 11:17:29] 2025-10-13 09:17:10,598 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 11:17:29] 2025-10-13 09:17:21,651 | INFO     | [monitor] cgroup control has ended
[2025-10-13 11:17:29] 2025-10-13 09:17:23,431 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140256419288896)>', '<ExcThread(monitor, started 140255571207936)>']
[2025-10-13 11:17:29] 2025-10-13 09:17:28,456 | INFO     | all workflow threads have been joined
[2025-10-13 11:17:29] 2025-10-13 09:17:28,456 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 11:17:29] 2025-10-13 09:17:28,456 | INFO     | traces error code: 0
[2025-10-13 11:17:29] 2025-10-13 09:17:28,456 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 11:17:29] 2025-10-13 09:17:28,981 | INFO     | PID=3470402 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 11:17:29] 2025-10-13 09:17:28,981 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 11:17:29] 2025-10-13 09:17:28,981 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 11:17:29] 2025-10-13 09:17:28,982 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 11:17:29] 2025-10-13 09:17:28,982 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 11:17:29] 2025-10-13 09:17:28,982 | INFO     | [monitor] control thread has ended
[2025-10-13 11:17:29] 2025-10-13 09:17:29,027 [wrapper] ==== pilot stdout END ====
[2025-10-13 11:17:29] 2025-10-13 09:17:29,030 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 11:17:29] 2025-10-13 09:17:29,033 [wrapper] pilotpid: 3470402
[2025-10-13 11:17:29] 2025-10-13 09:17:29,035 [wrapper] Pilot exit status: 0
[2025-10-13 11:17:29] 2025-10-13 09:17:29,043 [wrapper] pandaids: 6840536934
[2025-10-13 11:17:29] 2025-10-13 09:17:29,060 [wrapper] cleanup supervisor_pilot 3488667 3470403
[2025-10-13 11:17:29] 2025-10-13 09:17:29,063 [wrapper] Test setup, not cleaning
[2025-10-13 11:17:29] 2025-10-13 09:17:29,065 [wrapper] apfmon messages muted
[2025-10-13 11:17:29] 2025-10-13 09:17:29,068 [wrapper] ==== wrapper stdout END ====
[2025-10-13 11:17:29] 2025-10-13 09:17:29,070 [wrapper] ==== wrapper stderr END ====
[2025-10-13 11:17:29]  *** Error codes and diagnostics ***
[2025-10-13 11:17:29]     "exeErrorCode": 0,
[2025-10-13 11:17:29]     "exeErrorDiag": "",
[2025-10-13 11:17:29]     "pilotErrorCode": 0,
[2025-10-13 11:17:29]     "pilotErrorDiag": "",
[2025-10-13 11:17:29]  *** Listing of results directory ***
[2025-10-13 11:17:29] total 407420
[2025-10-13 11:17:29] -rw-r--r-- 1 boinc boinc    557409 Oct 12 20:20 pilot3.tar.gz
[2025-10-13 11:17:29] -rw-r--r-- 1 boinc boinc      5112 Oct 12 20:37 queuedata.json
[2025-10-13 11:17:29] -rwx------ 1 boinc boinc     36292 Oct 12 20:38 runpilot2-wrapper.sh
[2025-10-13 11:17:29] -rw-r--r-- 1 boinc boinc       100 Oct 13 09:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 11:17:29] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 09:58 run_atlas
[2025-10-13 11:17:29] -rw-r--r-- 1 boinc boinc       105 Oct 13 09:58 job.xml
[2025-10-13 11:17:29] -rw-r--r-- 2 boinc boinc 221440111 Oct 13 09:58 EVNT.46676267._004414.pool.root.1
[2025-10-13 11:17:29] -rw-r--r-- 2 boinc boinc    569684 Oct 13 09:58 input.tar.gz
[2025-10-13 11:17:29] -rw-r--r-- 2 boinc boinc     15120 Oct 13 09:58 start_atlas.sh
[2025-10-13 11:17:29] drwxrwx--x 2 boinc boinc      4096 Oct 13 09:58 shared
[2025-10-13 11:17:29] -rw-r--r-- 1 boinc boinc         0 Oct 13 09:58 boinc_setup_complete
[2025-10-13 11:17:29] -rw-r--r-- 1 boinc boinc      6448 Oct 13 09:58 init_data.xml
[2025-10-13 11:17:29] -rw-r--r-- 1 boinc boinc         0 Oct 13 09:58 boinc_lockfile
[2025-10-13 11:17:29] -rw-r--r-- 1 boinc boinc      2547 Oct 13 09:58 pandaJob.out
[2025-10-13 11:17:29] -rw------- 1 boinc boinc    972849 Oct 13 09:58 agis_schedconf.cvmfs.json
[2025-10-13 11:17:29] -rw------- 1 boinc boinc   1560580 Oct 13 09:58 agis_ddmendpoints.agis.ALL.json
[2025-10-13 11:17:29] drwx------ 5 boinc boinc      4096 Oct 13 09:58 pilot3
[2025-10-13 11:17:29] -rw-r--r-- 1 boinc boinc       530 Oct 13 11:16 boinc_task_state.xml
[2025-10-13 11:17:29] -rw------- 1 boinc boinc 190005529 Oct 13 11:16 HITS.46676269._086353.pool.root.1
[2025-10-13 11:17:29] -rw------- 1 boinc boinc        95 Oct 13 11:16 pilot_heartbeat.json
[2025-10-13 11:17:29] -rw------- 1 boinc boinc      1033 Oct 13 11:16 memory_monitor_summary.json
[2025-10-13 11:17:29] -rw------- 1 boinc boinc    236019 Oct 13 11:16 log.46676269._086353.job.log.tgz.1
[2025-10-13 11:17:29] -rw------- 1 boinc boinc      7757 Oct 13 11:16 heartbeat.json
[2025-10-13 11:17:29] -rw-r--r-- 1 boinc boinc      8192 Oct 13 11:17 boinc_mmap_file
[2025-10-13 11:17:29] -rw-r--r-- 1 boinc boinc        27 Oct 13 11:17 wrapper_checkpoint.txt
[2025-10-13 11:17:29] -rw------- 1 boinc boinc       747 Oct 13 11:17 pilotlog.txt
[2025-10-13 11:17:29] -rw------- 1 boinc boinc    696247 Oct 13 11:17 log.46676269._086353.job.log.1
[2025-10-13 11:17:29] -rw------- 1 boinc boinc       357 Oct 13 11:17 output.list
[2025-10-13 11:17:29] -rw-r--r-- 1 boinc boinc       620 Oct 13 11:17 runtime_log
[2025-10-13 11:17:29] -rw------- 1 boinc boinc    952320 Oct 13 11:17 result.tar.gz
[2025-10-13 11:17:29] -rw-r--r-- 1 boinc boinc      8792 Oct 13 11:17 runtime_log.err
[2025-10-13 11:17:29] -rw------- 1 boinc boinc       661 Oct 13 11:17 jeXLDmT8FS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmc6kNDmegj4In.diag
[2025-10-13 11:17:29] -rw-r--r-- 1 boinc boinc     10710 Oct 13 11:17 stderr.txt
[2025-10-13 11:17:29] HITS file was successfully produced:
[2025-10-13 11:17:29] -rw------- 1 boinc boinc 190005529 Oct 13 11:16 shared/HITS.pool.root.1
[2025-10-13 11:17:29]  *** Contents of shared directory: ***
[2025-10-13 11:17:29] total 403324
[2025-10-13 11:17:29] -rw-r--r-- 2 boinc boinc 221440111 Oct 13 09:58 ATLAS.root_0
[2025-10-13 11:17:29] -rw-r--r-- 2 boinc boinc    569684 Oct 13 09:58 input.tar.gz
[2025-10-13 11:17:29] -rw-r--r-- 2 boinc boinc     15120 Oct 13 09:58 start_atlas.sh
[2025-10-13 11:17:29] -rw------- 1 boinc boinc 190005529 Oct 13 11:16 HITS.pool.root.1
[2025-10-13 11:17:29] -rw------- 1 boinc boinc    952320 Oct 13 11:17 result.tar.gz
11:17:30 (3466680): run_atlas exited; CPU time 13529.990254
11:17:30 (3466680): called boinc_finish(0)

</stderr_txt>
]]>

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