Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:09:49 (18253): wrapper (7.7.26015): starting
18:09:49 (18253): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 18:09:49] Arguments: --nthreads 8
[2025-10-12 18:09:49] Threads: 8
[2025-10-12 18:09:49] Checking for CVMFS
[2025-10-12 18:09:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:09:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:09:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:09:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:09:50] 2.11.2.0 10816 53437 129536 151639 3 57 16987495 18432001 1833 130560 0 47248989 99.975 2391220 30283 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 18:09:50] CVMFS is ok
[2025-10-12 18:09:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:09:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:09:50] Further information can be found at the LHC@home message board.
[2025-10-12 18:09:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:09:50] Checking for apptainer binary...
[2025-10-12 18:09:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:09:50] Running /usr/bin/apptainer --version
[2025-10-12 18:09:50] apptainer version 1.3.2-1.el7
[2025-10-12 18:09:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:09:51] c-206-11.aglt2.org
[2025-10-12 18:09:51] apptainer works
[2025-10-12 18:09:51] Set ATHENA_PROC_NUMBER=8
[2025-10-12 18:09:51] Set ATHENA_CORE_NUMBER=8
[2025-10-12 18:09:51] Starting ATLAS job with PandaID=6840749565
[2025-10-12 18:09:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:18:25]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:18:25] 2025-10-13 01:17:29,114 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:18:25] 2025-10-13 01:17:29,120 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:18:25] 2025-10-13 01:17:29,120 | INFO     | sum of square deviations: 1931608310.0
[2025-10-12 21:18:25] 2025-10-13 01:17:29,122 | INFO     | sum of deviations: 26195704427.5
[2025-10-12 21:18:25] 2025-10-13 01:17:29,122 | INFO     | mean x: 1760312607.5
[2025-10-12 21:18:25] 2025-10-13 01:17:29,122 | INFO     | mean y: 2487665.2989130435
[2025-10-12 21:18:25] 2025-10-13 01:17:29,123 | INFO     | -- intersect: -23870172504.64611
[2025-10-12 21:18:25] 2025-10-13 01:17:29,123 | INFO     | intersect: -23870172504.64611
[2025-10-12 21:18:25] 2025-10-13 01:17:29,123 | INFO     | chi2: 1.4360116569768333
[2025-10-12 21:18:25] 2025-10-13 01:17:29,124 | INFO     | sum of square deviations: 1778377530.0
[2025-10-12 21:18:25] 2025-10-13 01:17:29,125 | INFO     | sum of deviations: 25523126144.000004
[2025-10-12 21:18:25] 2025-10-13 01:17:29,125 | INFO     | mean x: 1760312455.0
[2025-10-12 21:18:25] 2025-10-13 01:17:29,126 | INFO     | mean y: 2486995.7932960894
[2025-10-12 21:18:25] 2025-10-13 01:17:29,126 | INFO     | -- intersect: -25261370696.908955
[2025-10-12 21:18:25] 2025-10-13 01:17:29,126 | INFO     | intersect: -25261370696.908955
[2025-10-12 21:18:25] 2025-10-13 01:17:29,126 | INFO     | chi2: 1.4367097492150709
[2025-10-12 21:18:25] 2025-10-13 01:17:29,127 | INFO     | current chi2=1.4367097492150709 (change=-0.048613270988846984 %)
[2025-10-12 21:18:25] 2025-10-13 01:17:29,127 | INFO     | right removable region: 178
[2025-10-12 21:18:25] 2025-10-13 01:17:29,127 | INFO     | sum of square deviations: 1778377530.0
[2025-10-12 21:18:25] 2025-10-13 01:17:29,129 | INFO     | sum of deviations: -2494678509.0000005
[2025-10-12 21:18:25] 2025-10-13 01:17:29,129 | INFO     | mean x: 1760312760.0
[2025-10-12 21:18:25] 2025-10-13 01:17:29,129 | INFO     | mean y: 2515925.033519553
[2025-10-12 21:18:25] 2025-10-13 01:17:29,130 | INFO     | -- intersect: 2471853474.2379766
[2025-10-12 21:18:25] 2025-10-13 01:17:29,130 | INFO     | intersect: 2471853474.2379766
[2025-10-12 21:18:25] 2025-10-13 01:17:29,130 | INFO     | chi2: 0.05412665845666459
[2025-10-12 21:18:25] 2025-10-13 01:17:29,130 | INFO     | current chi2=0.05412665845666459 (change=96.23076468817705 %)
[2025-10-12 21:18:25] 2025-10-13 01:17:29,131 | INFO     | sum of square deviations: 1633472487.5
[2025-10-12 21:18:25] 2025-10-13 01:17:29,132 | INFO     | sum of deviations: -7242214995.999999
[2025-10-12 21:18:25] 2025-10-13 01:17:29,132 | INFO     | mean x: 1760312912.5
[2025-10-12 21:18:25] 2025-10-13 01:17:29,133 | INFO     | mean y: 2520865.3333333335
[2025-10-12 21:18:25] 2025-10-13 01:17:29,133 | INFO     | -- intersect: 7807099558.955153
[2025-10-12 21:18:25] 2025-10-13 01:17:29,133 | INFO     | intersect: 7807099558.955153
[2025-10-12 21:18:25] 2025-10-13 01:17:29,133 | INFO     | chi2: 0.010767754265133106
[2025-10-12 21:18:25] 2025-10-13 01:17:29,134 | INFO     | current chi2=0.010767754265133106 (change=80.10637535706348 %)
[2025-10-12 21:18:25] 2025-10-13 01:17:29,134 | INFO     | sum of square deviations: 1496660620.0
[2025-10-12 21:18:25] 2025-10-13 01:17:29,135 | INFO     | sum of deviations: -7716109844.000001
[2025-10-12 21:18:25] 2025-10-13 01:17:29,135 | INFO     | mean x: 1760313065.0
[2025-10-12 21:18:25] 2025-10-13 01:17:29,136 | INFO     | mean y: 2521391.076923077
[2025-10-12 21:18:25] 2025-10-13 01:17:29,136 | INFO     | -- intersect: 9077904806.56915
[2025-10-12 21:18:25] 2025-10-13 01:17:29,136 | INFO     | intersect: 9077904806.56915
[2025-10-12 21:18:25] 2025-10-13 01:17:29,136 | INFO     | chi2: 0.009295114697345246
[2025-10-12 21:18:25] 2025-10-13 01:17:29,137 | INFO     | current chi2=0.009295114697345246 (change=13.676385358796592 %)
[2025-10-12 21:18:25] 2025-10-13 01:17:29,137 | INFO     | left removable region: 30
[2025-10-12 21:18:25] 2025-10-13 01:17:29,137 | INFO     | sum of square deviations: 1005179777.0
[2025-10-12 21:18:25] 2025-10-13 01:17:29,138 | INFO     | sum of deviations: -6373326787.000002
[2025-10-12 21:18:25] 2025-10-13 01:17:29,138 | INFO     | mean x: 1760313339.5
[2025-10-12 21:18:25] 2025-10-13 01:17:29,139 | INFO     | mean y: 2520293.189189189
[2025-10-12 21:18:25] 2025-10-13 01:17:29,139 | INFO     | -- intersect: 11163759722.052847
[2025-10-12 21:18:25] 2025-10-13 01:17:29,139 | INFO     | intersect: 11163759722.052847
[2025-10-12 21:18:25] 2025-10-13 01:17:29,139 | INFO     | chi2: 0.008410080760076606
[2025-10-12 21:18:25] 2025-10-13 01:17:29,140 | INFO     | -- intersect: 11163759722.052847
[2025-10-12 21:18:25] 2025-10-13 01:17:29,140 | INFO     | current memory leak: -6.34 B/s (using 148 data points, chi2=0.01)
[2025-10-12 21:18:25] 2025-10-13 01:17:29,140 | INFO     | could have reported an average CPU frequency of 2572 MHz (10 samples)
[2025-10-12 21:18:25] 2025-10-13 01:17:29,141 | INFO     | ..............................
[2025-10-12 21:18:25] 2025-10-13 01:17:29,141 | INFO     | . Timing measurements:
[2025-10-12 21:18:25] 2025-10-13 01:17:29,141 | INFO     | . get job = 0 s
[2025-10-12 21:18:25] 2025-10-13 01:17:29,141 | INFO     | . initial setup = 2 s
[2025-10-12 21:18:25] 2025-10-13 01:17:29,141 | INFO     | . payload setup = 4 s
[2025-10-12 21:18:25] 2025-10-13 01:17:29,141 | INFO     | . stage-in = 0 s
[2025-10-12 21:18:25] 2025-10-13 01:17:29,142 | INFO     | . payload execution = 11215 s
[2025-10-12 21:18:25] 2025-10-13 01:17:29,142 | INFO     | . stage-out = 2 s
[2025-10-12 21:18:25] 2025-10-13 01:17:29,142 | INFO     | . log creation = 0 s
[2025-10-12 21:18:25] 2025-10-13 01:17:29,142 | INFO     | ..............................
[2025-10-12 21:18:25] 2025-10-13 01:17:29,255 | INFO     | 
[2025-10-12 21:18:25] 2025-10-13 01:17:29,255 | INFO     | job summary report
[2025-10-12 21:18:25] 2025-10-13 01:17:29,255 | INFO     | --------------------------------------------------
[2025-10-12 21:18:25] 2025-10-13 01:17:29,255 | INFO     | PanDA job id: 6840749565
[2025-10-12 21:18:25] 2025-10-13 01:17:29,256 | INFO     | task id: 46676269
[2025-10-12 21:18:25] 2025-10-13 01:17:29,256 | INFO     | errors: (none)
[2025-10-12 21:18:25] 2025-10-13 01:17:29,256 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:18:25] 2025-10-13 01:17:29,256 | INFO     | pilot state: finished 
[2025-10-12 21:18:25] 2025-10-13 01:17:29,256 | INFO     | transexitcode: 0
[2025-10-12 21:18:25] 2025-10-13 01:17:29,256 | INFO     | exeerrorcode: 0
[2025-10-12 21:18:25] 2025-10-13 01:17:29,256 | INFO     | exeerrordiag: 
[2025-10-12 21:18:25] 2025-10-13 01:17:29,256 | INFO     | exitcode: 0
[2025-10-12 21:18:25] 2025-10-13 01:17:29,256 | INFO     | exitmsg: OK
[2025-10-12 21:18:25] 2025-10-13 01:17:29,256 | INFO     | cpuconsumptiontime: 85036 s
[2025-10-12 21:18:25] 2025-10-13 01:17:29,257 | INFO     | nevents: 400
[2025-10-12 21:18:25] 2025-10-13 01:17:29,257 | INFO     | neventsw: 0
[2025-10-12 21:18:25] 2025-10-13 01:17:29,257 | INFO     | pid: 29299
[2025-10-12 21:18:25] 2025-10-13 01:17:29,257 | INFO     | pgrp: 29299
[2025-10-12 21:18:25] 2025-10-13 01:17:29,257 | INFO     | corecount: 8
[2025-10-12 21:18:25] 2025-10-13 01:17:29,257 | INFO     | event service: False
[2025-10-12 21:18:25] 2025-10-13 01:17:29,257 | INFO     | sizes: {0: 2348686, 1: 2348885, 4: 2349147, 12: 2349175, 11223: 2378505, 11226: 2387687, 11232: 2387825}
[2025-10-12 21:18:25] 2025-10-13 01:17:29,257 | INFO     | --------------------------------------------------
[2025-10-12 21:18:25] 2025-10-13 01:17:29,257 | INFO     | 
[2025-10-12 21:18:25] 2025-10-13 01:17:29,257 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 21:18:25] 2025-10-13 01:17:29,274 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,274 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,274 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,274 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,274 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,274 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,275 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,275 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,275 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,275 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,275 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,275 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,275 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,275 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,275 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,276 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,276 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,276 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:18:25] 2025-10-13 01:17:29,276 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,276 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:18:25] 2025-10-13 01:17:29,276 | INFO     | job 6840749565 has completed (purged errors)
[2025-10-12 21:18:25] 2025-10-13 01:17:29,276 | INFO     | overall cleanup function is called
[2025-10-12 21:18:25] 2025-10-13 01:17:30,282 | INFO     | --- collectZombieJob: --- 10, [29299]
[2025-10-12 21:18:25] 2025-10-13 01:17:30,283 | INFO     | zombie collector waiting for pid 29299
[2025-10-12 21:18:25] 2025-10-13 01:17:30,283 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:18:25] 2025-10-13 01:17:30,283 | INFO     | collected zombie processes
[2025-10-12 21:18:25] 2025-10-13 01:17:30,283 | INFO     | will attempt to kill all subprocesses of pid=29299
[2025-10-12 21:18:25] 2025-10-13 01:17:30,421 | INFO     | process IDs to be killed: [29299] (in reverse order)
[2025-10-12 21:18:25] 2025-10-13 01:17:30,474 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:18:25] 2025-10-13 01:17:30,475 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:18:25] 2025-10-13 01:17:30,479 | INFO     | did not find any defunct processes belonging to 29299
[2025-10-12 21:18:25] 2025-10-13 01:17:30,483 | INFO     | did not find any defunct processes belonging to 29299
[2025-10-12 21:18:25] 2025-10-13 01:17:30,483 | INFO     | ready for new job
[2025-10-12 21:18:25] 2025-10-13 01:17:30,483 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:18:25] 2025-10-13 01:17:30,484 | INFO     | ***************************************
[2025-10-12 21:18:25] 2025-10-13 01:17:30,484 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:18:25] 2025-10-13 01:17:30,484 | INFO     | ***************************************
[2025-10-12 21:18:25] 2025-10-13 01:17:30,485 | INFO     | 
[2025-10-12 21:18:25] 2025-10-13 01:17:30,485 | INFO     | architecture information:
[2025-10-12 21:18:25] 2025-10-13 01:17:30,486 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:18:25] 2025-10-13 01:17:30,504 | INFO     | cat /etc/os-release:
[2025-10-12 21:18:25] NAME="CentOS Linux"
[2025-10-12 21:18:25] VERSION="7 (Core)"
[2025-10-12 21:18:25] ID="centos"
[2025-10-12 21:18:25] ID_LIKE="rhel fedora"
[2025-10-12 21:18:25] VERSION_ID="7"
[2025-10-12 21:18:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:18:25] ANSI_COLOR="0;31"
[2025-10-12 21:18:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:18:25] HOME_URL="https://www.centos.org/"
[2025-10-12 21:18:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:18:25] 
[2025-10-12 21:18:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:18:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:18:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:18:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:18:25] 
[2025-10-12 21:18:25] 2025-10-13 01:17:30,504 | INFO     | ***************************************
[2025-10-12 21:18:25] 2025-10-13 01:17:31,007 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 21:18:25] 2025-10-13 01:17:31,022 | INFO     | sufficient remaining disk space (28282191872 B)
[2025-10-12 21:18:25] 2025-10-13 01:17:31,022 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:18:25] 2025-10-13 01:17:31,022 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:18:25] 2025-10-13 01:17:31,023 | INFO     | update_server=False
[2025-10-12 21:18:25] 2025-10-13 01:17:31,023 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:18:25] 2025-10-13 01:17:31,023 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:18:25] 2025-10-13 01:17:31,023 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:18:25] 2025-10-13 01:17:31,227 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 21:18:25] 2025-10-13 01:17:31,228 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 21:18:25] 2025-10-13 01:17:31,228 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:18:25] 2025-10-13 01:17:31,228 | INFO     | will abort loop
[2025-10-12 21:18:25] 2025-10-13 01:17:31,241 | INFO     | all job control threads have been joined
[2025-10-12 21:18:25] 2025-10-13 01:17:31,634 | INFO     | all data control threads have been joined
[2025-10-12 21:18:25] 2025-10-13 01:17:32,024 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:18:25] 2025-10-13 01:17:32,025 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:18:25] 2025-10-13 01:17:32,204 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:18:25] 2025-10-13 01:17:32,204 | INFO     | [job] validate thread has finished
[2025-10-12 21:18:25] 2025-10-13 01:17:32,234 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:18:25] 2025-10-13 01:17:32,247 | INFO     | [job] control thread has finished
[2025-10-12 21:18:25] 2025-10-13 01:17:32,344 | INFO     | all payload control threads have been joined
[2025-10-12 21:18:25] 2025-10-13 01:17:32,437 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:18:25] 2025-10-13 01:17:32,596 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:18:25] 2025-10-13 01:17:32,640 | INFO     | [data] control thread has finished
[2025-10-12 21:18:25] 2025-10-13 01:17:33,030 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:18:25] 2025-10-13 01:17:33,067 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:18:25] 2025-10-13 01:17:33,225 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:18:25] 2025-10-13 01:17:33,273 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:18:25] 2025-10-13 01:17:33,350 | INFO     | [payload] control thread has finished
[2025-10-12 21:18:25] 2025-10-13 01:17:33,490 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:18:25] 2025-10-13 01:17:33,623 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:18:25] 2025-10-13 01:17:37,645 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:18:25] 2025-10-13 01:18:00,681 | INFO     | PID=21919 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 21:18:25] 2025-10-13 01:18:00,681 | INFO     | .. there are 3 such processes running
[2025-10-12 21:18:25] 2025-10-13 01:18:00,682 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:18:25] 2025-10-13 01:18:00,682 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:18:25] 2025-10-13 01:18:00,683 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:18:25] 2025-10-13 01:18:19,849 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:18:25] 2025-10-13 01:18:20,377 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140664675968832)>', '<ExcThread(monitor, started 140664222226176)>']
[2025-10-12 21:18:25] 2025-10-13 01:18:20,784 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:18:25] 2025-10-13 01:18:20,785 | INFO     | [monitor] control thread has ended
[2025-10-12 21:18:25] 2025-10-13 01:18:25,393 | INFO     | all workflow threads have been joined
[2025-10-12 21:18:25] 2025-10-13 01:18:25,393 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:18:25] 2025-10-13 01:18:25,393 | INFO     | traces error code: 0
[2025-10-12 21:18:25] 2025-10-13 01:18:25,394 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:18:25] 2025-10-13 01:18:25,527 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:18:25] 2025-10-13 01:18:25,530 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:18:25] 2025-10-13 01:18:25,533 [wrapper] pilotpid: 21919
[2025-10-12 21:18:25] 2025-10-13 01:18:25,535 [wrapper] Pilot exit status: 0
[2025-10-12 21:18:25] 2025-10-13 01:18:25,545 [wrapper] pandaids: 6840749565
[2025-10-12 21:18:25] 2025-10-13 01:18:25,594 [wrapper] cleanup supervisor_pilot 16668 21920
[2025-10-12 21:18:25] 2025-10-13 01:18:25,597 [wrapper] Test setup, not cleaning
[2025-10-12 21:18:25] 2025-10-13 01:18:25,599 [wrapper] apfmon messages muted
[2025-10-12 21:18:25] 2025-10-13 01:18:25,602 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:18:25] 2025-10-13 01:18:25,610 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:18:25]  *** Error codes and diagnostics ***
[2025-10-12 21:18:25]     "exeErrorCode": 0,
[2025-10-12 21:18:25]     "exeErrorDiag": "",
[2025-10-12 21:18:25]     "pilotErrorCode": 0,
[2025-10-12 21:18:25]     "pilotErrorDiag": "",
[2025-10-12 21:18:25]  *** Listing of results directory ***
[2025-10-12 21:18:25] total 419824
[2025-10-12 21:18:25] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 16:23 pilot3.tar.gz
[2025-10-12 21:18:25] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 16:40 queuedata.json
[2025-10-12 21:18:25] -rwx------ 1 boincer umatlas     36292 Oct 12 16:41 runpilot2-wrapper.sh
[2025-10-12 21:18:25] -rw-r--r-- 1 boincer umatlas       100 Oct 12 18:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:18:25] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 18:09 run_atlas
[2025-10-12 21:18:25] -rw-r--r-- 1 boincer umatlas       105 Oct 12 18:09 job.xml
[2025-10-12 21:18:25] -rw-r--r-- 2 boincer umatlas 219815875 Oct 12 18:09 EVNT.46676267._004859.pool.root.1
[2025-10-12 21:18:25] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 18:09 input.tar.gz
[2025-10-12 21:18:25] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 18:09 start_atlas.sh
[2025-10-12 21:18:25] drwxrwx--x 2 boincer umatlas      4096 Oct 12 18:09 shared
[2025-10-12 21:18:25] -rw-r--r-- 1 boincer umatlas         0 Oct 12 18:09 boinc_lockfile
[2025-10-12 21:18:25] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 18:09 pandaJob.out
[2025-10-12 21:18:25] -rw------- 1 boincer umatlas    975528 Oct 12 18:09 agis_schedconf.cvmfs.json
[2025-10-12 21:18:25] drwx------ 5 boincer umatlas      4096 Oct 12 18:10 pilot3
[2025-10-12 21:18:25] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 21:11 init_data.xml
[2025-10-12 21:18:25] -rw------- 1 boincer umatlas 202165505 Oct 12 21:16 HITS.46676269._088997.pool.root.1
[2025-10-12 21:18:25] -rw-r--r-- 1 boincer umatlas       530 Oct 12 21:16 boinc_task_state.xml
[2025-10-12 21:18:25] -rw------- 1 boincer umatlas      1067 Oct 12 21:17 memory_monitor_summary.json
[2025-10-12 21:18:25] -rw------- 1 boincer umatlas   1560580 Oct 12 21:17 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:18:25] -rw------- 1 boincer umatlas    428543 Oct 12 21:17 log.46676269._088997.job.log.tgz.1
[2025-10-12 21:18:25] -rw------- 1 boincer umatlas      7858 Oct 12 21:17 heartbeat.json
[2025-10-12 21:18:25] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 21:17 boinc_mmap_file
[2025-10-12 21:18:25] -rw-r--r-- 1 boincer umatlas        28 Oct 12 21:17 wrapper_checkpoint.txt
[2025-10-12 21:18:25] -rw------- 1 boincer umatlas        95 Oct 12 21:18 pilot_heartbeat.json
[2025-10-12 21:18:25] -rw------- 1 boincer umatlas      5007 Oct 12 21:18 pilotlog.txt
[2025-10-12 21:18:25] -rw------- 1 boincer umatlas   1582218 Oct 12 21:18 log.46676269._088997.job.log.1
[2025-10-12 21:18:25] -rw------- 1 boincer umatlas       357 Oct 12 21:18 output.list
[2025-10-12 21:18:25] -rw-r--r-- 1 boincer umatlas       620 Oct 12 21:18 runtime_log
[2025-10-12 21:18:25] -rw------- 1 boincer umatlas   2027520 Oct 12 21:18 result.tar.gz
[2025-10-12 21:18:25] -rw-r--r-- 1 boincer umatlas      8704 Oct 12 21:18 runtime_log.err
[2025-10-12 21:18:25] -rw------- 1 boincer umatlas       662 Oct 12 21:18 JioKDmd3HS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeUlNDmM82P1n.diag
[2025-10-12 21:18:25] -rw-r--r-- 1 boincer umatlas     20909 Oct 12 21:18 stderr.txt
[2025-10-12 21:18:25] HITS file was successfully produced:
[2025-10-12 21:18:25] -rw------- 1 boincer umatlas 202165505 Oct 12 21:16 shared/HITS.pool.root.1
[2025-10-12 21:18:25]  *** Contents of shared directory: ***
[2025-10-12 21:18:25] total 414652
[2025-10-12 21:18:25] -rw-r--r-- 2 boincer umatlas 219815875 Oct 12 18:09 ATLAS.root_0
[2025-10-12 21:18:25] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 18:09 input.tar.gz
[2025-10-12 21:18:25] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 18:09 start_atlas.sh
[2025-10-12 21:18:25] -rw------- 1 boincer umatlas 202165505 Oct 12 21:16 HITS.pool.root.1
[2025-10-12 21:18:25] -rw------- 1 boincer umatlas   2027520 Oct 12 21:18 result.tar.gz
21:18:27 (18253): run_atlas exited; CPU time 85166.746081
21:18:27 (18253): called boinc_finish(0)

</stderr_txt>
]]>

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