Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:43:31 (4050375): wrapper (7.7.26015): starting
08:43:31 (4050375): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 08:43:31] Arguments: --nthreads 4
[2025-10-13 08:43:31] Threads: 4
[2025-10-13 08:43:31] Checking for CVMFS
[2025-10-13 08:43:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 08:43:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 08:43:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 08:43:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 08:43:32] 2.9.2.0 2186487 5383 99680 151652 3 56 28711955 36864000 0 130560 0 4846019 99.992 186979 866 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 08:43:32] CVMFS is ok
[2025-10-13 08:43:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 08:43:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 08:43:32] Further information can be found at the LHC@home message board.
[2025-10-13 08:43:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:43:32] Checking for apptainer binary...
[2025-10-13 08:43:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 08:43:32] Running /usr/bin/apptainer --version
[2025-10-13 08:43:32] apptainer version 1.4.1-1.1
[2025-10-13 08:43:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:43:32] belleA253c
[2025-10-13 08:43:32] apptainer works
[2025-10-13 08:43:32] Set ATHENA_PROC_NUMBER=4
[2025-10-13 08:43:32] Set ATHENA_CORE_NUMBER=4
[2025-10-13 08:43:32] Starting ATLAS job with PandaID=6840749461
[2025-10-13 08:43:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:57:52]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:57:52] 2025-10-13 07:57:11,831 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6840749461/log.46676269._088893.job.log.tgz.1 /local/data/boinc/slots/0/log.46676269._0888
[2025-10-13 09:57:52] 2025-10-13 07:57:11,850 | INFO     | adding to output.list: log.46676269._088893.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/9e/log.46676269._088893.job.log.tg
[2025-10-13 09:57:52] 2025-10-13 07:57:11,851 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 09:57:52] 2025-10-13 07:57:11,851 | INFO     | summary of transferred files:
[2025-10-13 09:57:52] 2025-10-13 07:57:11,851 | INFO     |  -- lfn=log.46676269._088893.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 09:57:52] 2025-10-13 07:57:11,851 | INFO     | stage-out finished correctly
[2025-10-13 09:57:52] 2025-10-13 07:57:11,891 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 09:57:52] 2025-10-13 07:57:12,436 | INFO     | time since job start (4412s) is within the limit (172800.0s)
[2025-10-13 09:57:52] 2025-10-13 07:57:12,822 | INFO     | job 6840749461 has state=finished
[2025-10-13 09:57:52] 2025-10-13 07:57:12,822 | INFO     | preparing for final server update for job 6840749461 in state='finished'
[2025-10-13 09:57:52] 2025-10-13 07:57:12,822 | INFO     | this job has now completed (state=finished)
[2025-10-13 09:57:52] 2025-10-13 07:57:12,822 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 09:57:52] 2025-10-13 07:57:12,822 | INFO     | log transfer has been attempted: DONE
[2025-10-13 09:57:52] 2025-10-13 07:57:12,822 | INFO     | job 6840749461 has finished - writing final server update
[2025-10-13 09:57:52] 2025-10-13 07:57:12,823 | INFO     | total number of processed events: 400 (read)
[2025-10-13 09:57:52] 2025-10-13 07:57:12,823 | INFO     | executing command: lscpu
[2025-10-13 09:57:52] 2025-10-13 07:57:12,844 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 09:57:52] 2025-10-13 07:57:14,441 | INFO     | time since job start (4414s) is within the limit (172800.0s)
[2025-10-13 09:57:52] 2025-10-13 07:57:16,447 | INFO     | time since job start (4416s) is within the limit (172800.0s)
[2025-10-13 09:57:52] 2025-10-13 07:57:17,019 | WARNING  | process 4060718 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 09:57:52] 2025-10-13 07:57:17,019 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6840749461/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 09:57:52] 2025-10-13 07:57:17,019 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6840749461/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 09:57:52] 2025-10-13 07:57:17,020 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-13 09:57:52] 2025-10-13 07:57:17,020 | WARNING  | maxPSS not found in memory monitor output
[2025-10-13 09:57:52] 2025-10-13 07:57:17,020 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2277919 B
[2025-10-13 09:57:52] 2025-10-13 07:57:17,020 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15552 B
[2025-10-13 09:57:52] 2025-10-13 07:57:17,020 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 09:57:52] 2025-10-13 07:57:17,882 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 09:57:52] 2025-10-13 07:57:17,888 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3479.111
[2025-10-13 09:57:52] 2025-10-13 07:57:17,890 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6840749461/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 09:57:52] 2025-10-13 07:57:17,890 | INFO     | extracted standard info from prmon json
[2025-10-13 09:57:52] 2025-10-13 07:57:17,890 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 09:57:52] 2025-10-13 07:57:17,890 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 09:57:52] 2025-10-13 07:57:17,891 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 09:57:52] 2025-10-13 07:57:17,891 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 09:57:52] 2025-10-13 07:57:17,892 | INFO     | fitting pss+swap vs Time
[2025-10-13 09:57:52] 2025-10-13 07:57:17,892 | INFO     | sum of square deviations: 85136480.0
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | sum of deviations: -8773205196.0
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | mean x: 1760340100.0
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | mean y: 2514029.923076923
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | -- intersect: 181403306170.34467
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | intersect: 181403306170.34467
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | chi2: 0.05662918978498269
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | -- intersect: 181403306170.34467
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | current memory leak: -103.05 B/s (using 65 data points, chi2=0.06)
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | could have reported an average CPU frequency of 3574 MHz (6 samples)
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | ..............................
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | . Timing measurements:
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | . get job = 0 s
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | . initial setup = 1 s
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | . payload setup = 4 s
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | . stage-in = 0 s
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | . payload execution = 4388 s
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | . stage-out = 0 s
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | . log creation = 0 s
[2025-10-13 09:57:52] 2025-10-13 07:57:17,893 | INFO     | ..............................
[2025-10-13 09:57:52] 2025-10-13 07:57:17,907 | INFO     | sufficient remaining disk space (331137155072 B)
[2025-10-13 09:57:52] 2025-10-13 07:57:17,923 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-13 09:57:52] 2025-10-13 07:57:17,935 | INFO     | 
[2025-10-13 09:57:52] 2025-10-13 07:57:17,935 | INFO     | job summary report
[2025-10-13 09:57:52] 2025-10-13 07:57:17,935 | INFO     | --------------------------------------------------
[2025-10-13 09:57:52] 2025-10-13 07:57:17,935 | INFO     | PanDA job id: 6840749461
[2025-10-13 09:57:52] 2025-10-13 07:57:17,935 | INFO     | task id: 46676269
[2025-10-13 09:57:52] 2025-10-13 07:57:17,935 | INFO     | errors: (none)
[2025-10-13 09:57:52] 2025-10-13 07:57:17,935 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 09:57:52] 2025-10-13 07:57:17,935 | INFO     | pilot state: finished 
[2025-10-13 09:57:52] 2025-10-13 07:57:17,935 | INFO     | transexitcode: 0
[2025-10-13 09:57:52] 2025-10-13 07:57:17,935 | INFO     | exeerrorcode: 0
[2025-10-13 09:57:52] 2025-10-13 07:57:17,936 | INFO     | exeerrordiag: 
[2025-10-13 09:57:52] 2025-10-13 07:57:17,936 | INFO     | exitcode: 0
[2025-10-13 09:57:52] 2025-10-13 07:57:17,936 | INFO     | exitmsg: OK
[2025-10-13 09:57:52] 2025-10-13 07:57:17,936 | INFO     | cpuconsumptiontime: 16498 s
[2025-10-13 09:57:52] 2025-10-13 07:57:17,936 | INFO     | nevents: 400
[2025-10-13 09:57:52] 2025-10-13 07:57:17,936 | INFO     | neventsw: 0
[2025-10-13 09:57:52] 2025-10-13 07:57:17,936 | INFO     | pid: 4060718
[2025-10-13 09:57:52] 2025-10-13 07:57:17,936 | INFO     | pgrp: 4060718
[2025-10-13 09:57:52] 2025-10-13 07:57:17,936 | INFO     | corecount: 4
[2025-10-13 09:57:52] 2025-10-13 07:57:17,936 | INFO     | event service: False
[2025-10-13 09:57:52] 2025-10-13 07:57:17,936 | INFO     | sizes: {0: 2348860, 4: 2349122, 11: 2349150, 4397: 2384374, 4403: 2384512}
[2025-10-13 09:57:52] 2025-10-13 07:57:17,936 | INFO     | --------------------------------------------------
[2025-10-13 09:57:52] 2025-10-13 07:57:17,936 | INFO     | 
[2025-10-13 09:57:52] 2025-10-13 07:57:17,936 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-13 09:57:52] 2025-10-13 07:57:17,940 | INFO     | size of work directory /local/data/boinc/slots/0/PanDA_Pilot-6840749461: 2572032 B (within 2537553920 B limit)
[2025-10-13 09:57:52] 2025-10-13 07:57:17,941 | INFO     | pfn file=/local/data/boinc/slots/0/PanDA_Pilot-6840749461/HITS.46676269._088893.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-13 09:57:52] 2025-10-13 07:57:17,941 | INFO     | total size of present files: 0 B (workdir size: 2572032 B)
[2025-10-13 09:57:52] 2025-10-13 07:57:17,941 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6840749461/HITS.46676269._088893.pool.root.1 since it does not exist
[2025-10-13 09:57:52] 2025-10-13 07:57:17,954 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,954 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,954 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,954 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,954 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,955 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,955 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,955 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,955 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,955 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,955 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,955 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,955 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,955 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,955 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,955 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,955 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,955 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 09:57:52] 2025-10-13 07:57:17,955 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,955 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 09:57:52] 2025-10-13 07:57:17,955 | INFO     | job 6840749461 has completed (purged errors)
[2025-10-13 09:57:52] 2025-10-13 07:57:17,955 | INFO     | overall cleanup function is called
[2025-10-13 09:57:52] 2025-10-13 07:57:17,989 | INFO     | number of running child processes to parent process 4060718: 1
[2025-10-13 09:57:52] 2025-10-13 07:57:17,989 | INFO     | maximum number of monitored processes: 6
[2025-10-13 09:57:52] 2025-10-13 07:57:17,989 | INFO     | aborting job monitoring since job object (job id=6840749461) has expired
[2025-10-13 09:57:52] 2025-10-13 07:57:18,963 | INFO     | --- collectZombieJob: --- 10, [4060718]
[2025-10-13 09:57:52] 2025-10-13 07:57:18,963 | INFO     | zombie collector waiting for pid 4060718
[2025-10-13 09:57:52] 2025-10-13 07:57:18,963 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 09:57:52] 2025-10-13 07:57:18,963 | INFO     | collected zombie processes
[2025-10-13 09:57:52] 2025-10-13 07:57:18,963 | INFO     | will attempt to kill all subprocesses of pid=4060718
[2025-10-13 09:57:52] 2025-10-13 07:57:19,007 | INFO     | process IDs to be killed: [4060718] (in reverse order)
[2025-10-13 09:57:52] 2025-10-13 07:57:19,041 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 09:57:52] 2025-10-13 07:57:19,041 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 09:57:52] 2025-10-13 07:57:19,043 | INFO     | did not find any defunct processes belonging to 4060718
[2025-10-13 09:57:52] 2025-10-13 07:57:19,044 | INFO     | did not find any defunct processes belonging to 4060718
[2025-10-13 09:57:52] 2025-10-13 07:57:19,044 | INFO     | ready for new job
[2025-10-13 09:57:52] 2025-10-13 07:57:19,044 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 09:57:52] 2025-10-13 07:57:19,045 | INFO     | ***************************************
[2025-10-13 09:57:52] 2025-10-13 07:57:19,045 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 09:57:52] 2025-10-13 07:57:19,045 | INFO     | ***************************************
[2025-10-13 09:57:52] 2025-10-13 07:57:19,045 | INFO     | 
[2025-10-13 09:57:52] 2025-10-13 07:57:19,045 | INFO     | architecture information:
[2025-10-13 09:57:52] 2025-10-13 07:57:19,045 | INFO     | executing command: cat /etc/os-release
[2025-10-13 09:57:52] 2025-10-13 07:57:19,059 | INFO     | cat /etc/os-release:
[2025-10-13 09:57:52] NAME="CentOS Linux"
[2025-10-13 09:57:52] VERSION="7 (Core)"
[2025-10-13 09:57:52] ID="centos"
[2025-10-13 09:57:52] ID_LIKE="rhel fedora"
[2025-10-13 09:57:52] VERSION_ID="7"
[2025-10-13 09:57:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 09:57:52] ANSI_COLOR="0;31"
[2025-10-13 09:57:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 09:57:52] HOME_URL="https://www.centos.org/"
[2025-10-13 09:57:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 09:57:52] 
[2025-10-13 09:57:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 09:57:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 09:57:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 09:57:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 09:57:52] 
[2025-10-13 09:57:52] 2025-10-13 07:57:19,060 | INFO     | ***************************************
[2025-10-13 09:57:52] 2025-10-13 07:57:19,563 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 09:57:52] 2025-10-13 07:57:19,581 | INFO     | sufficient remaining disk space (331140300800 B)
[2025-10-13 09:57:52] 2025-10-13 07:57:19,581 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 09:57:52] 2025-10-13 07:57:19,581 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 09:57:52] 2025-10-13 07:57:19,581 | INFO     | update_server=False
[2025-10-13 09:57:52] 2025-10-13 07:57:19,581 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 09:57:52] 2025-10-13 07:57:19,581 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:57:52] 2025-10-13 07:57:19,581 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:57:52] 2025-10-13 07:57:19,582 | INFO     | aborting loop
[2025-10-13 09:57:52] 2025-10-13 07:57:19,903 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 09:57:52] 2025-10-13 07:57:19,955 | INFO     | all data control threads have been joined
[2025-10-13 09:57:52] 2025-10-13 07:57:20,587 | INFO     | [job] retrieve thread has finished
[2025-10-13 09:57:52] 2025-10-13 07:57:20,587 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:57:52] 2025-10-13 07:57:20,587 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:57:52] 2025-10-13 07:57:20,652 | INFO     | all job control threads have been joined
[2025-10-13 09:57:52] 2025-10-13 07:57:20,859 | INFO     | all payload control threads have been joined
[2025-10-13 09:57:52] 2025-10-13 07:57:20,960 | INFO     | [data] control thread has finished
[2025-10-13 09:57:52] 2025-10-13 07:57:21,101 | INFO     | [job] validate thread has finished
[2025-10-13 09:57:52] 2025-10-13 07:57:21,136 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:57:52] 2025-10-13 07:57:21,214 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:57:52] 2025-10-13 07:57:21,254 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:57:52] 2025-10-13 07:57:21,292 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 09:57:52] 2025-10-13 07:57:21,658 | INFO     | [job] control thread has finished
[2025-10-13 09:57:52] 2025-10-13 07:57:21,865 | INFO     | [payload] control thread has finished
[2025-10-13 09:57:52] 2025-10-13 07:57:21,871 | INFO     | [data] copytool_in thread has finished
[2025-10-13 09:57:52] 2025-10-13 07:57:21,909 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:57:52] 2025-10-13 07:57:21,932 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:57:52] 2025-10-13 07:57:22,444 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:57:52] 2025-10-13 07:57:26,451 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:57:52] 2025-10-13 07:57:30,589 | INFO     | job.realtimelogging is not enabled
[2025-10-13 09:57:52] 2025-10-13 07:57:31,594 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:57:52] 2025-10-13 07:57:45,433 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:57:52] 2025-10-13 07:57:47,299 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140425569941312)>', '<ExcThread(monitor, started 140424551327488)>']
[2025-10-13 09:57:52] 2025-10-13 07:57:49,578 | INFO     | PID=4054154 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 09:57:52] 2025-10-13 07:57:49,578 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:57:52] 2025-10-13 07:57:49,578 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:57:52] 2025-10-13 07:57:49,578 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:57:52] 2025-10-13 07:57:49,578 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:57:52] 2025-10-13 07:57:49,578 | INFO     | [monitor] control thread has ended
[2025-10-13 09:57:52] 2025-10-13 07:57:52,325 | INFO     | all workflow threads have been joined
[2025-10-13 09:57:52] 2025-10-13 07:57:52,325 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:57:52] 2025-10-13 07:57:52,326 | INFO     | traces error code: 0
[2025-10-13 09:57:52] 2025-10-13 07:57:52,326 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:57:52] 2025-10-13 07:57:52,405 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:57:52] 2025-10-13 07:57:52,409 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:57:52] 2025-10-13 07:57:52,413 [wrapper] pilotpid: 4054154
[2025-10-13 09:57:52] 2025-10-13 07:57:52,417 [wrapper] Pilot exit status: 0
[2025-10-13 09:57:52] 2025-10-13 07:57:52,429 [wrapper] pandaids: 6840749461
[2025-10-13 09:57:52] 2025-10-13 07:57:52,452 [wrapper] cleanup supervisor_pilot 4070347 4054155
[2025-10-13 09:57:52] 2025-10-13 07:57:52,456 [wrapper] Test setup, not cleaning
[2025-10-13 09:57:52] 2025-10-13 07:57:52,460 [wrapper] apfmon messages muted
[2025-10-13 09:57:52] 2025-10-13 07:57:52,463 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:57:52] 2025-10-13 07:57:52,467 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:57:52]  *** Error codes and diagnostics ***
[2025-10-13 09:57:52]     "exeErrorCode": 0,
[2025-10-13 09:57:52]     "exeErrorDiag": "",
[2025-10-13 09:57:52]     "pilotErrorCode": 0,
[2025-10-13 09:57:52]     "pilotErrorDiag": "",
[2025-10-13 09:57:52]  *** Listing of results directory ***
[2025-10-13 09:57:52] total 412896
[2025-10-13 09:57:52] -rw-r--r-- 1 boinc boinc    557409 Oct 12 22:23 pilot3.tar.gz
[2025-10-13 09:57:52] -rw-r--r-- 1 boinc boinc      5112 Oct 12 22:38 queuedata.json
[2025-10-13 09:57:52] -rwx------ 1 boinc boinc     36292 Oct 12 22:38 runpilot2-wrapper.sh
[2025-10-13 09:57:52] -rw-r--r-- 1 boinc boinc       100 Oct 13 08:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:57:52] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 08:43 run_atlas
[2025-10-13 09:57:52] -rw-r--r-- 1 boinc boinc       105 Oct 13 08:43 job.xml
[2025-10-13 09:57:52] -rw-r--r-- 2 boinc boinc 220219100 Oct 13 08:43 EVNT.46676267._004855.pool.root.1
[2025-10-13 09:57:52] -rw-r--r-- 2 boinc boinc    569682 Oct 13 08:43 input.tar.gz
[2025-10-13 09:57:52] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:43 start_atlas.sh
[2025-10-13 09:57:52] drwxrwx--x 2 boinc boinc      4096 Oct 13 08:43 shared
[2025-10-13 09:57:52] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:43 boinc_setup_complete
[2025-10-13 09:57:52] -rw-r--r-- 1 boinc boinc      6381 Oct 13 08:43 init_data.xml
[2025-10-13 09:57:52] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:43 boinc_lockfile
[2025-10-13 09:57:52] -rw-r--r-- 1 boinc boinc      2550 Oct 13 08:43 pandaJob.out
[2025-10-13 09:57:52] -rw------- 1 boinc boinc    972849 Oct 13 08:43 agis_schedconf.cvmfs.json
[2025-10-13 09:57:52] -rw------- 1 boinc boinc   1560580 Oct 13 08:43 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:57:52] drwx------ 5 boinc boinc      4096 Oct 13 08:43 pilot3
[2025-10-13 09:57:52] -rw------- 1 boinc boinc 196859600 Oct 13 09:56 HITS.46676269._088893.pool.root.1
[2025-10-13 09:57:52] -rw-r--r-- 1 boinc boinc       529 Oct 13 09:56 boinc_task_state.xml
[2025-10-13 09:57:52] -rw------- 1 boinc boinc        95 Oct 13 09:57 pilot_heartbeat.json
[2025-10-13 09:57:52] -rw------- 1 boinc boinc      1021 Oct 13 09:57 memory_monitor_summary.json
[2025-10-13 09:57:52] -rw------- 1 boinc boinc    257259 Oct 13 09:57 log.46676269._088893.job.log.tgz.1
[2025-10-13 09:57:52] -rw------- 1 boinc boinc      7772 Oct 13 09:57 heartbeat.json
[2025-10-13 09:57:52] -rw-r--r-- 1 boinc boinc        27 Oct 13 09:57 wrapper_checkpoint.txt
[2025-10-13 09:57:52] -rw-r--r-- 1 boinc boinc      8192 Oct 13 09:57 boinc_mmap_file
[2025-10-13 09:57:52] -rw------- 1 boinc boinc      4824 Oct 13 09:57 pilotlog.txt
[2025-10-13 09:57:52] -rw------- 1 boinc boinc    655080 Oct 13 09:57 log.46676269._088893.job.log.1
[2025-10-13 09:57:52] -rw------- 1 boinc boinc       357 Oct 13 09:57 output.list
[2025-10-13 09:57:52] -rw-r--r-- 1 boinc boinc       620 Oct 13 09:57 runtime_log
[2025-10-13 09:57:52] -rw------- 1 boinc boinc    931840 Oct 13 09:57 result.tar.gz
[2025-10-13 09:57:52] -rw-r--r-- 1 boinc boinc      8797 Oct 13 09:57 runtime_log.err
[2025-10-13 09:57:52] -rw------- 1 boinc boinc       662 Oct 13 09:57 IDPNDmh0HS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm5yUMDmyh8Pqm.diag
[2025-10-13 09:57:52] -rw-r--r-- 1 boinc boinc     22592 Oct 13 09:57 stderr.txt
[2025-10-13 09:57:52] HITS file was successfully produced:
[2025-10-13 09:57:52] -rw------- 1 boinc boinc 196859600 Oct 13 09:56 shared/HITS.pool.root.1
[2025-10-13 09:57:52]  *** Contents of shared directory: ***
[2025-10-13 09:57:52] total 408804
[2025-10-13 09:57:52] -rw-r--r-- 2 boinc boinc 220219100 Oct 13 08:43 ATLAS.root_0
[2025-10-13 09:57:52] -rw-r--r-- 2 boinc boinc    569682 Oct 13 08:43 input.tar.gz
[2025-10-13 09:57:52] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:43 start_atlas.sh
[2025-10-13 09:57:52] -rw------- 1 boinc boinc 196859600 Oct 13 09:56 HITS.pool.root.1
[2025-10-13 09:57:52] -rw------- 1 boinc boinc    931840 Oct 13 09:57 result.tar.gz
09:57:54 (4050375): run_atlas exited; CPU time 16511.540368
09:57:54 (4050375): called boinc_finish(0)

</stderr_txt>
]]>

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